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Items: 1 to 50 of 61

1.

Bifidobacteriumbreve Bif195 Protects Against Small-Intestinal Damage Caused by Acetylsalicylic Acid in Healthy Volunteers.

Mortensen B, Murphy C, O'Grady J, Lucey M, Elsafi G, Barry L, Westphal V, Wellejus A, Lukjancenko O, Eklund AC, Nielsen HB, Baker A, Damholt A, van Hylckama Vlieg JET, Shanahan F, Buckley M.

Gastroenterology. 2019 Sep;157(3):637-646.e4. doi: 10.1053/j.gastro.2019.05.008. Epub 2019 May 13.

2.

Translating microbiome futures.

Taroncher-Oldenburg G, Jones S, Blaser M, Bonneau R, Christey P, Clemente JC, Elinav E, Ghedin E, Huttenhower C, Kelly D, Kyle D, Littman D, Maiti A, Maue A, Olle B, Segal L, van Hylckama Vlieg JET, Wang J.

Nat Biotechnol. 2018 Nov 9;36(11):1037-1042. doi: 10.1038/nbt.4287. No abstract available.

PMID:
30412201
3.

Understanding mode of action can drive the translational pipeline towards more reliable health benefits for probiotics.

Kleerebezem M, Binda S, Bron PA, Gross G, Hill C, van Hylckama Vlieg JE, Lebeer S, Satokari R, Ouwehand AC.

Curr Opin Biotechnol. 2019 Apr;56:55-60. doi: 10.1016/j.copbio.2018.09.007. Epub 2018 Oct 5. Review.

4.

Expanding the reach of probiotics through social enterprises.

Reid G, Kort R, Alvarez S, Bourdet-Sicard R, Benoit V, Cunningham M, Saulnier DM, van Hylckama Vlieg JET, Verstraelen H, Sybesma W.

Benef Microbes. 2018 Sep 18;9(5):707-715. doi: 10.3920/BM2018.0015. Epub 2018 May 25. Review.

PMID:
29798708
5.

Lactobacillus paracasei CNCM I-3689 reduces vancomycin-resistant Enterococcus persistence and promotes Bacteroidetes resilience in the gut following antibiotic challenge.

Crouzet L, Derrien M, Cherbuy C, Plancade S, Foulon M, Chalin B, van Hylckama Vlieg JET, Grompone G, Rigottier-Gois L, Serror P.

Sci Rep. 2018 Mar 23;8(1):5098. doi: 10.1038/s41598-018-23437-9.

6.

Brain Structure and Response to Emotional Stimuli as Related to Gut Microbial Profiles in Healthy Women.

Tillisch K, Mayer EA, Gupta A, Gill Z, Brazeilles R, Le Nevé B, van Hylckama Vlieg JET, Guyonnet D, Derrien M, Labus JS.

Psychosom Med. 2017 Oct;79(8):905-913. doi: 10.1097/PSY.0000000000000493.

7.

Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes.

Zhang C, Derrien M, Levenez F, Brazeilles R, Ballal SA, Kim J, Degivry MC, Quéré G, Garault P, van Hylckama Vlieg JE, Garrett WS, Doré J, Veiga P.

ISME J. 2016 Sep;10(9):2235-45. doi: 10.1038/ismej.2016.13. Epub 2016 Mar 8.

8.

Lactobacillus rhamnosus CNCMI-4317 Modulates Fiaf/Angptl4 in Intestinal Epithelial Cells and Circulating Level in Mice.

Jacouton E, Mach N, Cadiou J, Lapaque N, Clément K, Doré J, van Hylckama Vlieg JE, Smokvina T, Blottière HM.

PLoS One. 2015 Oct 6;10(10):e0138880. doi: 10.1371/journal.pone.0138880. eCollection 2015.

9.

Fate, activity, and impact of ingested bacteria within the human gut microbiota.

Derrien M, van Hylckama Vlieg JE.

Trends Microbiol. 2015 Jun;23(6):354-66. doi: 10.1016/j.tim.2015.03.002. Epub 2015 Apr 1. Review.

10.

Lactobacillus rhamnosus CNCM I-3690 and the commensal bacterium Faecalibacterium prausnitzii A2-165 exhibit similar protective effects to induced barrier hyper-permeability in mice.

Laval L, Martin R, Natividad JN, Chain F, Miquel S, Desclée de Maredsous C, Capronnier S, Sokol H, Verdu EF, van Hylckama Vlieg JE, Bermúdez-Humarán LG, Smokvina T, Langella P.

Gut Microbes. 2015;6(1):1-9. doi: 10.4161/19490976.2014.990784. Epub 2015 Jan 14.

11.

Changes of the human gut microbiome induced by a fermented milk product.

Veiga P, Pons N, Agrawal A, Oozeer R, Guyonnet D, Brazeilles R, Faurie JM, van Hylckama Vlieg JE, Houghton LA, Whorwell PJ, Ehrlich SD, Kennedy SP.

Sci Rep. 2014 Sep 11;4:6328. doi: 10.1038/srep06328.

12.

Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice.

Wang J, Tang H, Zhang C, Zhao Y, Derrien M, Rocher E, van-Hylckama Vlieg JE, Strissel K, Zhao L, Obin M, Shen J.

ISME J. 2015 Jan;9(1):1-15. doi: 10.1038/ismej.2014.99. Epub 2014 Jun 17.

13.

Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis.

O' Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D.

PLoS One. 2014 Apr 17;9(4):e94875. doi: 10.1371/journal.pone.0094875. eCollection 2014.

14.

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.

Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS.

ISME J. 2014 Jul;8(7):1403-17. doi: 10.1038/ismej.2014.3. Epub 2014 Feb 6.

15.

Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity.

Smokvina T, Wels M, Polka J, Chervaux C, Brisse S, Boekhorst J, van Hylckama Vlieg JE, Siezen RJ.

PLoS One. 2013 Jul 19;8(7):e68731. doi: 10.1371/journal.pone.0068731. Print 2013.

16.

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.

Vrieze A, Van Nood E, Holleman F, Salojärvi J, Kootte RS, Bartelsman JF, Dallinga-Thie GM, Ackermans MT, Serlie MJ, Oozeer R, Derrien M, Druesne A, Van Hylckama Vlieg JE, Bloks VW, Groen AK, Heilig HG, Zoetendal EG, Stroes ES, de Vos WM, Hoekstra JB, Nieuwdorp M.

Gastroenterology. 2012 Oct;143(4):913-6.e7. doi: 10.1053/j.gastro.2012.06.031. Epub 2012 Jun 20. Erratum in: Gastroenterology. 2013 Jan;144(1):250.

PMID:
22728514
17.

Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution.

Bachmann H, Starrenburg MJ, Molenaar D, Kleerebezem M, van Hylckama Vlieg JE.

Genome Res. 2012 Jan;22(1):115-24. doi: 10.1101/gr.121285.111. Epub 2011 Nov 11.

18.

Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer.

Siezen RJ, van Hylckama Vlieg JE.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S3. doi: 10.1186/1475-2859-10-S1-S3. Epub 2011 Aug 30. Review.

19.

Genome sequence of the probiotic strain Bifidobacterium animalis subsp. lactis CNCM I-2494.

Chervaux C, Grimaldi C, Bolotin A, Quinquis B, Legrain-Raspaud S, van Hylckama Vlieg JE, Denariaz G, Smokvina T.

J Bacteriol. 2011 Oct;193(19):5560-1. doi: 10.1128/JB.05716-11.

20.

Volatile compound fingerprinting of mixed-culture fermentations.

de Bok FA, Janssen PW, Bayjanov JR, Sieuwerts S, Lommen A, van Hylckama Vlieg JE, Molenaar D.

Appl Environ Microbiol. 2011 Sep;77(17):6233-9. doi: 10.1128/AEM.00352-11. Epub 2011 Jul 8.

21.

High-resolution amplified fragment length polymorphism typing of Lactococcus lactis strains enables identification of genetic markers for subspecies-related phenotypes.

Kütahya OE, Starrenburg MJ, Rademaker JL, Klaassen CH, van Hylckama Vlieg JE, Smid EJ, Kleerebezem M.

Appl Environ Microbiol. 2011 Aug;77(15):5192-8. doi: 10.1128/AEM.00518-11. Epub 2011 Jun 10.

22.

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.

Siezen RJ, Bayjanov JR, Felis GE, van der Sijde MR, Starrenburg M, Molenaar D, Wels M, van Hijum SA, van Hylckama Vlieg JE.

Microb Biotechnol. 2011 May;4(3):383-402. doi: 10.1111/j.1751-7915.2011.00247.x. Epub 2011 Feb 21.

23.

Impact of microbial transformation of food on health - from fermented foods to fermentation in the gastro-intestinal tract.

van Hylckama Vlieg JE, Veiga P, Zhang C, Derrien M, Zhao L.

Curr Opin Biotechnol. 2011 Apr;22(2):211-9. doi: 10.1016/j.copbio.2010.12.004. Epub 2011 Jan 19. Review.

PMID:
21247750
24.

High local substrate availability stabilizes a cooperative trait.

Bachmann H, Molenaar D, Kleerebezem M, van Hylckama Vlieg JE.

ISME J. 2011 May;5(5):929-32. doi: 10.1038/ismej.2010.179. Epub 2010 Dec 9.

25.

Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis.

Machielsen R, Siezen RJ, van Hijum SA, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2011 Jan;77(2):555-63. doi: 10.1128/AEM.02283-10. Epub 2010 Nov 29.

26.

Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes.

Veiga P, Gallini CA, Beal C, Michaud M, Delaney ML, DuBois A, Khlebnikov A, van Hylckama Vlieg JE, Punit S, Glickman JN, Onderdonk A, Glimcher LH, Garrett WS.

Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):18132-7. doi: 10.1073/pnas.1011737107. Epub 2010 Oct 4. Erratum in: Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21943.

27.

Mixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricus.

Sieuwerts S, Molenaar D, van Hijum SA, Beerthuyzen M, Stevens MJ, Janssen PW, Ingham CJ, de Bok FA, de Vos WM, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2010 Dec;76(23):7775-84. doi: 10.1128/AEM.01122-10. Epub 2010 Oct 1.

28.

Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium.

Siezen RJ, Bayjanov J, Renckens B, Wels M, van Hijum SA, Molenaar D, van Hylckama Vlieg JE.

J Bacteriol. 2010 May;192(10):2649-50. doi: 10.1128/JB.00276-10. Epub 2010 Mar 26.

29.

Time-resolved genetic responses of Lactococcus lactis to a dairy environment.

Bachmann H, de Wilt L, Kleerebezem M, van Hylckama Vlieg JE.

Environ Microbiol. 2010 May;12(5):1260-70. doi: 10.1111/j.1462-2920.2010.02168.x. Epub 2010 Feb 18.

PMID:
20192965
30.

Indigenous and environmental modulation of frequencies of mutation in Lactobacillus plantarum.

Machielsen R, van Alen-Boerrigter IJ, Koole LA, Bongers RS, Kleerebezem M, Van Hylckama Vlieg JE.

Appl Environ Microbiol. 2010 Mar;76(5):1587-95. doi: 10.1128/AEM.02595-09. Epub 2009 Dec 28.

31.

Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches.

Siezen RJ, Tzeneva VA, Castioni A, Wels M, Phan HT, Rademaker JL, Starrenburg MJ, Kleerebezem M, Molenaar D, van Hylckama Vlieg JE.

Environ Microbiol. 2010 Mar;12(3):758-73. doi: 10.1111/j.1462-2920.2009.02119.x. Epub 2009 Dec 4.

PMID:
20002138
32.

A high-throughput cheese manufacturing model for effective cheese starter culture screening.

Bachmann H, Kruijswijk Z, Molenaar D, Kleerebezem M, van Hylckama Vlieg JE.

J Dairy Sci. 2009 Dec;92(12):5868-82. doi: 10.3168/jds.2009-2372.

33.

Regulatory phenotyping reveals important diversity within the species Lactococcus lactis.

Bachmann H, Starrenburg MJ, Dijkstra A, Molenaar D, Kleerebezem M, Rademaker JL, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2009 Sep;75(17):5687-94. doi: 10.1128/AEM.00919-09. Epub 2009 Jul 10.

34.

PanCGH: a genotype-calling algorithm for pangenome CGH data.

Bayjanov JR, Wels M, Starrenburg M, van Hylckama Vlieg JE, Siezen RJ, Molenaar D.

Bioinformatics. 2009 Feb 1;25(3):309-14. doi: 10.1093/bioinformatics/btn632. Epub 2009 Jan 7.

35.

The D-2-hydroxyacid dehydrogenase incorrectly annotated PanE is the sole reduction system for branched-chain 2-keto acids in Lactococcus lactis.

Chambellon E, Rijnen L, Lorquet F, Gitton C, van Hylckama Vlieg JE, Wouters JA, Yvon M.

J Bacteriol. 2009 Feb;191(3):873-81. doi: 10.1128/JB.01114-08. Epub 2008 Dec 1.

36.

MEMS and the microbe.

Ingham CJ, van Hylckama Vlieg JE.

Lab Chip. 2008 Oct;8(10):1604-16. doi: 10.1039/b804790a. Epub 2008 Aug 18. Review.

PMID:
18813380
37.

Unraveling microbial interactions in food fermentations: from classical to genomics approaches.

Sieuwerts S, de Bok FA, Hugenholtz J, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2008 Aug;74(16):4997-5007. doi: 10.1128/AEM.00113-08. Epub 2008 Jun 20. Review. No abstract available.

38.

High-throughput identification and validation of in situ-expressed genes of Lactococcus lactis.

Bachmann H, Kleerebezem M, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2008 Aug;74(15):4727-36. doi: 10.1128/AEM.00297-08. Epub 2008 Jun 6.

39.

Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche.

Siezen RJ, Starrenburg MJ, Boekhorst J, Renckens B, Molenaar D, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2008 Jan;74(2):424-36. Epub 2007 Nov 26.

40.

The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms.

Ingham CJ, Sprenkels A, Bomer J, Molenaar D, van den Berg A, van Hylckama Vlieg JE, de Vos WM.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18217-22. Epub 2007 Nov 7.

41.

Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting.

Rademaker JL, Herbet H, Starrenburg MJ, Naser SM, Gevers D, Kelly WJ, Hugenholtz J, Swings J, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2007 Nov;73(22):7128-37. Epub 2007 Sep 21.

42.

Dichotomy in post-genomic microbiology.

Felis GE, Molenaar D, Dellaglio F, van Hylckama Vlieg JE.

Nat Biotechnol. 2007 Aug;25(8):848-9. No abstract available.

PMID:
17687355
43.

Quantitative analysis of population heterogeneity of the adaptive salt stress response and growth capacity of Bacillus cereus ATCC 14579.

den Besten HM, Ingham CJ, van Hylckama Vlieg JE, Beerthuyzen MM, Zwietering MH, Abee T.

Appl Environ Microbiol. 2007 Aug;73(15):4797-804. Epub 2007 Jun 1.

44.

Luciferase detection during stationary phase in Lactococcus lactis.

Bachmann H, Santos F, Kleerebezem M, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2007 Jul;73(14):4704-6. Epub 2007 May 18.

45.

Expression of plant flavor genes in Lactococcus lactis.

Hernández I, Molenaar D, Beekwilder J, Bouwmeester H, van Hylckama Vlieg JE.

Appl Environ Microbiol. 2007 Mar;73(5):1544-52. Epub 2007 Jan 5.

46.

Natural diversity and adaptive responses of Lactococcus lactis.

van Hylckama Vlieg JE, Rademaker JL, Bachmann H, Molenaar D, Kelly WJ, Siezen RJ.

Curr Opin Biotechnol. 2006 Apr;17(2):183-90. Epub 2006 Mar 6. Review.

PMID:
16517150
47.

Identification, cloning, and characterization of a Lactococcus lactis branched-chain alpha-keto acid decarboxylase involved in flavor formation.

Smit BA, van Hylckama Vlieg JE, Engels WJ, Meijer L, Wouters JT, Smit G.

Appl Environ Microbiol. 2005 Jan;71(1):303-11.

48.

Development of a high throughput screening method to test flavour-forming capabilities of anaerobic micro-organisms.

Smit BA, Engels WJ, Bruinsma J, van Hylckama Vlieg JE, Wouters JT, Smit G.

J Appl Microbiol. 2004;97(2):306-13.

49.

Halohydrin dehalogenases are structurally and mechanistically related to short-chain dehydrogenases/reductases.

van Hylckama Vlieg JE, Tang L, Lutje Spelberg JH, Smilda T, Poelarends GJ, Bosma T, van Merode AE, Fraaije MW, Janssen DB.

J Bacteriol. 2001 Sep;183(17):5058-66.

50.

Enzymic and structural studies on Drosophila alcohol dehydrogenase and other short-chain dehydrogenases/reductases.

Smilda T, Kamminga AH, Reinders P, Baron W, van Hylckama Vlieg JE, Beintema JJ.

J Mol Evol. 2001 May;52(5):457-66.

PMID:
11443349

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