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Items: 1 to 50 of 231


Fast identification of Escherichia coli in urinary tract infections using a virulence gene based PCR approach in a novel thermal cycler.

Brons JK, Vink SN, de Vos MGJ, Reuter S, Dobrindt U, van Elsas JD.

J Microbiol Methods. 2020 Feb;169:105799. doi: 10.1016/j.mimet.2019.105799. Epub 2019 Nov 30.


Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium.

Jiménez DJ, Wang Y, Chaib de Mares M, Cortes-Tolalpa L, Mertens JA, Hector RE, Lin J, Johnson J, Lipzen A, Barry K, Mondo SJ, Grigoriev IV, Nichols NN, van Elsas JD.

FEMS Microbiol Ecol. 2020 Jan 1;96(1). pii: fiz186. doi: 10.1093/femsec/fiz186.


Mangrove soil as a source for novel xylanase and amylase as determined by cultivation-dependent and cultivation-independent methods.

Alves KJ, da Silva MCP, Cotta SR, Ottoni JR, van Elsas JD, de Oliveira VM, Andreote FD.

Braz J Microbiol. 2019 Nov 18. doi: 10.1007/s42770-019-00162-7. [Epub ahead of print]


Chemical and biological dispersants differently affect the bacterial communities of uncontaminated and oil-contaminated marine water.

Rattes de Almeida Couto C, Catharine de Assis Leite D, Jurelevicius D, van Elsas JD, Seldin L.

Braz J Microbiol. 2019 Oct 14. doi: 10.1007/s42770-019-00153-8. [Epub ahead of print]


Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery.

Mondo SJ, Jiménez DJ, Hector RE, Lipzen A, Yan M, LaButti K, Barry K, van Elsas JD, Grigoriev IV, Nichols NN.

Biotechnol Biofuels. 2019 Sep 23;12:229. doi: 10.1186/s13068-019-1569-6. eCollection 2019.


Gene mobility in microbiomes of the mycosphere and mycorrhizosphere -role of plasmids and bacteriophages.

Pratama AA, van Elsas JD.

FEMS Microbiol Ecol. 2019 May 1;95(5). pii: fiz053. doi: 10.1093/femsec/fiz053.


High incidence of acquiring methicillin-resistant Staphylococcus aureus in Brazilian children with Atopic Dermatitis and associated risk factors.

Abad ED, Ferreira DC, Cavalcante FS, Saintive S, Goudouris E, Prado EA, Hofer C, Ribeiro M, da Silva AMP, Rosado AS, van Elsas JD, Dos Santos KRN.

J Microbiol Immunol Infect. 2019 Mar 21. pii: S1684-1182(19)30025-8. doi: 10.1016/j.jmii.2018.12.014. [Epub ahead of print]


Exploring bacterial functionality in mangrove sediments and its capability to overcome anthropogenic activity.

Cotta SR, Cadete LL, van Elsas JD, Andreote FD, Dias ACF.

Mar Pollut Bull. 2019 Apr;141:586-594. doi: 10.1016/j.marpolbul.2019.03.001. Epub 2019 Mar 13.


Oxidative damage induced by H2O2 reveals SOS adaptive transcriptional response of Dietzia cinnamea strain P4.

Procópio L, Pádula M, van Elsas JD, Seldin L.

World J Microbiol Biotechnol. 2019 Mar 21;35(4):53. doi: 10.1007/s11274-019-2628-7.


Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics.

Chaib De Mares M, Jiménez DJ, Palladino G, Gutleben J, Lebrun LA, Muller EEL, Wilmes P, Sipkema D, van Elsas JD.

Sci Rep. 2018 Aug 7;8(1):11795. doi: 10.1038/s41598-018-30134-0.


Dispersal-competition tradeoff in microbiomes in the quest for land colonization.

Dini-Andreote F, van Elsas JD, Olff H, Salles JF.

Sci Rep. 2018 Jun 21;8(1):9451. doi: 10.1038/s41598-018-27783-6.


The Response of Paraburkholderia terrae Strains to Two Soil Fungi and the Potential Role of Oxalate.

Haq IU, Zwahlen RD, Yang P, van Elsas JD.

Front Microbiol. 2018 May 29;9:989. doi: 10.3389/fmicb.2018.00989. eCollection 2018.


Evolutionary History of Bacteriophages in the Genus Paraburkholderia.

Pratama AA, Chaib De Mares M, van Elsas JD.

Front Microbiol. 2018 May 11;9:835. doi: 10.3389/fmicb.2018.00835. eCollection 2018.


Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution.

Leite DCA, Salles JF, Calderon EN, Castro CB, Bianchini A, Marques JA, van Elsas JD, Peixoto RS.

Front Microbiol. 2018 Apr 27;9:833. doi: 10.3389/fmicb.2018.00833. eCollection 2018.


Bacterial-fungal interactions: ecology, mechanisms and challenges.

Deveau A, Bonito G, Uehling J, Paoletti M, Becker M, Bindschedler S, Hacquard S, Hervé V, Labbé J, Lastovetsky OA, Mieszkin S, Millet LJ, Vajna B, Junier P, Bonfante P, Krom BP, Olsson S, van Elsas JD, Wick LY.

FEMS Microbiol Rev. 2018 May 1;42(3):335-352. doi: 10.1093/femsre/fuy008. Review.


Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont.

Leite DCA, Salles JF, Calderon EN, van Elsas JD, Peixoto RS.

Ecol Evol. 2018 Jan 11;8(3):1818-1832. doi: 10.1002/ece3.3717. eCollection 2018 Feb.


Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate.

Cortes-Tolalpa L, Norder J, van Elsas JD, Falcao Salles J.

Appl Microbiol Biotechnol. 2018 Mar;102(6):2913-2927. doi: 10.1007/s00253-017-8714-6. Epub 2018 Feb 3.


Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera.

Chaib De Mares M, Sipkema D, Huang S, Bunk B, Overmann J, van Elsas JD.

Front Microbiol. 2017 Dec 20;8:2560. doi: 10.3389/fmicb.2017.02560. eCollection 2017.


Migration of Paraburkholderia terrae BS001 Along Old Fungal Hyphae in Soil at Various pH Levels.

Yang P, Oliveira da Rocha Calixto R, van Elsas JD.

Microb Ecol. 2018 Aug;76(2):443-452. doi: 10.1007/s00248-017-1137-1. Epub 2018 Jan 10.


The 'Neglected' Soil Virome - Potential Role and Impact.

Pratama AA, van Elsas JD.

Trends Microbiol. 2018 Aug;26(8):649-662. doi: 10.1016/j.tim.2017.12.004. Epub 2018 Jan 3. Review.


Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437.

Pratama AA, Haq IU, Nazir R, Chaib De Mares M, van Elsas JD.

Stand Genomic Sci. 2017 Dec 18;12:81. doi: 10.1186/s40793-017-0293-8. eCollection 2017.


Optimized fluorescent proteins for the rhizosphere-associated bacterium Bacillus mycoides with endophytic and biocontrol agent potential.

Yi Y, Frenzel E, Spoelder J, Elzenga JTM, van Elsas JD, Kuipers OP.

Environ Microbiol Rep. 2018 Feb;10(1):57-74. doi: 10.1111/1758-2229.12607. Epub 2018 Jan 5.


Bacterial Synergism in Lignocellulose Biomass Degradation - Complementary Roles of Degraders As Influenced by Complexity of the Carbon Source.

Cortes-Tolalpa L, Salles JF, van Elsas JD.

Front Microbiol. 2017 Oct 10;8:1628. doi: 10.3389/fmicb.2017.01628. eCollection 2017.


Bacterial communities in soil become sensitive to drought under intensive grazing.

Jurburg SD, Natal-da-Luz T, Raimundo J, Morais PV, Sousa JP, van Elsas JD, Salles JF.

Sci Total Environ. 2018 Mar 15;618:1638-1646. doi: 10.1016/j.scitotenv.2017.10.012. Epub 2017 Oct 18.


Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation.

Jurburg SD, Nunes I, Brejnrod A, Jacquiod S, Priemé A, Sørensen SJ, Van Elsas JD, Salles JF.

Front Microbiol. 2017 Sep 25;8:1832. doi: 10.3389/fmicb.2017.01832. eCollection 2017.


The parA Region of Broad-Host-Range PromA Plasmids Is a Carrier of Mobile Genes.

Dias ACF, Cotta SR, Andreote FD, van Elsas JD.

Microb Ecol. 2018 Feb;75(2):479-486. doi: 10.1007/s00248-017-1059-y. Epub 2017 Sep 5.


A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437.

Pratama AA, van Elsas JD.

Sci Rep. 2017 Aug 22;7(1):9156. doi: 10.1038/s41598-017-09317-8.


Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia.

Jiménez DJ, Dini-Andreote F, DeAngelis KM, Singer SW, Salles JF, van Elsas JD.

Trends Microbiol. 2017 Oct;25(10):788-796. doi: 10.1016/j.tim.2017.05.012. Epub 2017 Jun 22. Review.


Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils.

López-Lozano NE, Pereira E Silva MC, Poly F, Guillaumaud N, van Elsas JD, Salles JF.

Antonie Van Leeuwenhoek. 2017 Nov;110(11):1453-1465. doi: 10.1007/s10482-017-0898-3. Epub 2017 Jun 12.


Role of flagella and type four pili in the co-migration of Burkholderia terrae BS001 with fungal hyphae through soil.

Yang P, Zhang M, van Elsas JD.

Sci Rep. 2017 Jun 7;7(1):2997. doi: 10.1038/s41598-017-02959-8.


The first acidobacterial laccase-like multicopper oxidase revealed by metagenomics shows high salt and thermo-tolerance.

Ausec L, Berini F, Casciello C, Cretoiu MS, van Elsas JD, Marinelli F, Mandic-Mulec I.

Appl Microbiol Biotechnol. 2017 Aug;101(15):6261-6276. doi: 10.1007/s00253-017-8345-y. Epub 2017 Jun 6.


Molecular cloning, expression, and characterization of four novel thermo-alkaliphilic enzymes retrieved from a metagenomic library.

Maruthamuthu M, van Elsas JD.

Biotechnol Biofuels. 2017 Jun 2;10:142. doi: 10.1186/s13068-017-0808-y. eCollection 2017.


The multi-omics promise in context: from sequence to microbial isolate.

Gutleben J, Chaib De Mares M, van Elsas JD, Smidt H, Overmann J, Sipkema D.

Crit Rev Microbiol. 2018 Mar;44(2):212-229. doi: 10.1080/1040841X.2017.1332003. Epub 2017 May 31. Review.


Characterization of a furan aldehyde-tolerant β-xylosidase/α-arabinosidase obtained through a synthetic metagenomics approach.

Maruthamuthu M, Jiménez DJ, van Elsas JD.

J Appl Microbiol. 2017 Jul;123(1):145-158. doi: 10.1111/jam.13484. Epub 2017 Jun 9.


Response of the bacterial community in oil-contaminated marine water to the addition of chemical and biological dispersants.

Couto CR, Jurelevicius DA, Alvarez VM, van Elsas JD, Seldin L.

J Environ Manage. 2016 Dec 15;184(Pt 3):473-479. doi: 10.1016/j.jenvman.2016.10.039. Epub 2016 Oct 27.


Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core.

Leite DC, Leão P, Garrido AG, Lins U, Santos HF, Pires DO, Castro CB, van Elsas JD, Zilberberg C, Rosado AS, Peixoto RS.

Front Microbiol. 2017 Feb 7;8:176. doi: 10.3389/fmicb.2017.00176. eCollection 2017.


The Ecological Role of Type Three Secretion Systems in the Interaction of Bacteria with Fungi in Soil and Related Habitats Is Diverse and Context-Dependent.

Nazir R, Mazurier S, Yang P, Lemanceau P, van Elsas JD.

Front Microbiol. 2017 Jan 31;8:38. doi: 10.3389/fmicb.2017.00038. eCollection 2017. Review.


Plants Assemble Species Specific Bacterial Communities from Common Core Taxa in Three Arcto-Alpine Climate Zones.

Kumar M, Brader G, Sessitsch A, Mäki A, van Elsas JD, Nissinen R.

Front Microbiol. 2017 Jan 24;8:12. doi: 10.3389/fmicb.2017.00012. eCollection 2017.


Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates.

Jiménez DJ, Hector RE, Riley R, Lipzen A, Kuo RC, Amirebrahimi M, Barry KW, Grigoriev IV, van Elsas JD, Nichols NN.

Genome Announc. 2017 Jan 26;5(4). pii: e01476-16. doi: 10.1128/genomeA.01476-16.


Transcriptional Responses of the Bacterium Burkholderia terrae BS001 to the Fungal Host Lyophyllum sp. Strain Karsten under Soil-Mimicking Conditions.

Haq IU, Dini-Andreote F, van Elsas JD.

Microb Ecol. 2017 Jan;73(1):236-252. doi: 10.1007/s00248-016-0885-7. Epub 2016 Nov 14.


The Role of Hydrophobicity and Surface Receptors at Hyphae of Lyophyllum sp. Strain Karsten in the Interaction with Burkholderia terrae BS001 - Implications for Interactions in Soil.

Vila T, Nazir R, Rozental S, Dos Santos GM, Calixto RO, Barreto-Bergter E, Wick LY, van Elsas JD.

Front Microbiol. 2016 Oct 27;7:1689. eCollection 2016.


Chemotaxis and adherence to fungal surfaces are key components of the behavioral response of Burkholderia terrae BS001 to two selected soil fungi.

Haq IU, Calixto RO, Yang P, Dos Santos GM, Barreto-Bergter E, van Elsas JD.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw164. doi: 10.1093/femsec/fiw164. Epub 2016 Aug 4.


The Complete Sequences and Ecological Roles of Two IncP-1β Plasmids, pHB44 and pBS64, Isolated from the Mycosphere of Laccaria proxima.

Zhang M, Brons JK, van Elsas JD.

Front Microbiol. 2016 Jun 21;7:909. doi: 10.3389/fmicb.2016.00909. eCollection 2016.


Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches.

Jiménez DJ, de Lima Brossi MJ, Schückel J, Kračun SK, Willats WG, van Elsas JD.

Appl Microbiol Biotechnol. 2016 Dec;100(24):10463-10477. Epub 2016 Jul 14.


Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem.

Dini-Andreote F, Brossi MJ, van Elsas JD, Salles JF.

Front Microbiol. 2016 Jun 15;7:902. doi: 10.3389/fmicb.2016.00902. eCollection 2016.


Genomics of high molecular weight plasmids isolated from an on-farm biopurification system.

Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillán-Barcia MP, de la Cruz F, Schlüter A, Pühler A, Pistorio M, Lagares A, Del Papa MF.

Sci Rep. 2016 Jun 20;6:28284. doi: 10.1038/srep28284.


Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity.

Cortes-Tolalpa L, Jiménez DJ, de Lima Brossi MJ, Salles JF, van Elsas JD.

Appl Microbiol Biotechnol. 2016 Sep;100(17):7713-25. doi: 10.1007/s00253-016-7516-6. Epub 2016 May 12.


Draft Genome Sequence of Bacillus mycoides M2E15, a Strain Isolated from the Endosphere of Potato.

Yi Y, de Jong A, Spoelder J, Elzenga JT, van Elsas JD, Kuipers OP.

Genome Announc. 2016 Feb 25;4(1). pii: e00031-16. doi: 10.1128/genomeA.00031-16.

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