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Items: 37

1.

Panel-Based Nuclear and Mitochondrial Next-Generation Sequencing Outcomes of an Ethnically Diverse Pediatric Patient Cohort with Mitochondrial Disease.

Schoonen M, Smuts I, Louw R, Elson JL, van Dyk E, Jonck LM, Rodenburg RJT, van der Westhuizen FH.

J Mol Diagn. 2019 May;21(3):503-513. doi: 10.1016/j.jmoldx.2019.02.002. Epub 2019 Mar 11.

PMID:
30872186
2.

Chronic pain medication management of older populations: Key points from a national conference and innovative opportunities for pharmacy practice.

Gilmartin-Thomas JF, Bell JS, Liew D, Arnold CA, Buchbinder R, Chapman C, Cicuttini F, Dobbin M, Gibson SJ, Giummarra MJ, Gowan J, Katz B, Lubman DI, McCrone M, Pilgrim J, Synnot A, van Dyk E, Workman B, McNeil J.

Res Social Adm Pharm. 2019 Feb;15(2):207-213. doi: 10.1016/j.sapharm.2018.03.060. Epub 2018 Mar 19.

PMID:
29622502
3.

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.

Shugay M, Bagaev DV, Zvyagin IV, Vroomans RM, Crawford JC, Dolton G, Komech EA, Sycheva AL, Koneva AE, Egorov ES, Eliseev AV, Van Dyk E, Dash P, Attaf M, Rius C, Ladell K, McLaren JE, Matthews KK, Clemens EB, Douek DC, Luciani F, van Baarle D, Kedzierska K, Kesmir C, Thomas PG, Price DA, Sewell AK, Chudakov DM.

Nucleic Acids Res. 2018 Jan 4;46(D1):D419-D427. doi: 10.1093/nar/gkx760.

4.

Clinically proven mtDNA mutations are not common in those with chronic fatigue syndrome.

Schoeman EM, Van Der Westhuizen FH, Erasmus E, van Dyk E, Knowles CV, Al-Ali S, Ng WF, Taylor RW, Newton JL, Elson JL.

BMC Med Genet. 2017 Mar 16;18(1):29. doi: 10.1186/s12881-017-0387-6.

5.

Using MutPred derived mtDNA load scores to evaluate mtDNA variation in hypertension and diabetes in a two-population cohort: The SABPA study.

Venter M, Malan L, van Dyk E, Elson JL, van der Westhuizen FH.

J Genet Genomics. 2017 Mar 20;44(3):139-149. doi: 10.1016/j.jgg.2016.12.003. Epub 2016 Dec 26.

PMID:
28298255
6.

Exposure to high levels of fumarate and succinate leads to apoptotic cytotoxicity and altered global DNA methylation profiles in vitro.

Wentzel JF, Lewies A, Bronkhorst AJ, van Dyk E, du Plessis LH, Pretorius PJ.

Biochimie. 2017 Apr;135:28-34. doi: 10.1016/j.biochi.2017.01.004. Epub 2017 Jan 16.

PMID:
28104508
7.

An Enquiry Concerning the Characteristics of Cell-Free DNA Released by Cultured Cancer Cells.

Bronkhorst AJ, Wentzel JF, Aucamp J, van Dyk E, du Plessis LH, Pretorius PJ.

Adv Exp Med Biol. 2016;924:19-24.

PMID:
27753012
8.

A Landscape of Pharmacogenomic Interactions in Cancer.

Iorio F, Knijnenburg TA, Vis DJ, Bignell GR, Menden MP, Schubert M, Aben N, Gonçalves E, Barthorpe S, Lightfoot H, Cokelaer T, Greninger P, van Dyk E, Chang H, de Silva H, Heyn H, Deng X, Egan RK, Liu Q, Mironenko T, Mitropoulos X, Richardson L, Wang J, Zhang T, Moran S, Sayols S, Soleimani M, Tamborero D, Lopez-Bigas N, Ross-Macdonald P, Esteller M, Gray NS, Haber DA, Stratton MR, Benes CH, Wessels LFA, Saez-Rodriguez J, McDermott U, Garnett MJ.

Cell. 2016 Jul 28;166(3):740-754. doi: 10.1016/j.cell.2016.06.017. Epub 2016 Jul 7.

9.

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks.

van Dyk E, Hoogstraat M, Ten Hoeve J, Reinders MJ, Wessels LF.

Nat Commun. 2016 Jul 11;7:12159. doi: 10.1038/ncomms12159.

10.

Characterization of the cell-free DNA released by cultured cancer cells.

Bronkhorst AJ, Wentzel JF, Aucamp J, van Dyk E, du Plessis L, Pretorius PJ.

Biochim Biophys Acta. 2016 Jan;1863(1):157-65. doi: 10.1016/j.bbamcr.2015.10.022. Epub 2015 Oct 31.

11.

Conservation of the coding regions of the glycine N-acyltransferase gene further suggests that glycine conjugation is an essential detoxification pathway.

van der Sluis R, Badenhorst CP, Erasmus E, van Dyk E, van der Westhuizen FH, van Dijk AA.

Gene. 2015 Oct 15;571(1):126-34. doi: 10.1016/j.gene.2015.06.081. Epub 2015 Jul 3.

PMID:
26149650
12.

Robust BRCA1-like classification of copy number profiles of samples repeated across different datasets and platforms.

Schouten PC, Grigoriadis A, Kuilman T, Mirza H, Watkins JA, Cooke SA, van Dyk E, Severson TM, Rueda OM, Hoogstraat M, Verhagen CV, Natrajan R, Chin SF, Lips EH, Kruizinga J, Velds A, Nieuwland M, Kerkhoven RM, Krijgsman O, Vens C, Peeper D, Nederlof PM, Caldas C, Tutt AN, Wessels LF, Linn SC.

Mol Oncol. 2015 Aug;9(7):1274-86. doi: 10.1016/j.molonc.2015.03.002. Epub 2015 Mar 20.

13.

Proper genomic profiling of (BRCA1-mutated) basal-like breast carcinomas requires prior removal of tumor infiltrating lymphocytes.

Massink MP, Kooi IE, van Mil SE, Jordanova ES, Ameziane N, Dorsman JC, van Beek DM, van der Voorn JP, Sie D, Ylstra B, van Deurzen CH, Martens JW, Smid M, Sieuwerts AM, de Weerd V, Foekens JA, van den Ouweland AM, van Dyk E, Nederlof PM, Waisfisz Q, Meijers-Heijboer H.

Mol Oncol. 2015 Apr;9(4):877-88. doi: 10.1016/j.molonc.2014.12.012. Epub 2015 Jan 13.

14.

Model for teaching population health and community-based care across diverse clinical experiences.

Van Dyk EJ, Valentine-Maher SK, Tracy JP.

J Nurs Educ. 2015 Feb;54(2):97-101. doi: 10.3928/01484834-20150120-03. Epub 2015 Jan 20.

PMID:
25602586
15.

Using a medium-throughput comet assay to evaluate the global DNA methylation status of single cells.

Lewies A, Van Dyk E, Wentzel JF, Pretorius PJ.

Front Genet. 2014 Jul 7;5:215. doi: 10.3389/fgene.2014.00215. eCollection 2014.

16.

Teaching population health and community-based care across diverse clinical experiences: integration of conceptual pillars and constructivist learning.

Valentine-Maher SK, Van Dyk EJ, Aktan NM, Bliss JB.

J Nurs Educ. 2014 Mar;53(3):S11-8. doi: 10.3928/01484834-20140217-01. Epub 2014 Feb 17.

PMID:
24530010
17.

Platform comparisons for identification of breast cancers with a BRCA-like copy number profile.

Schouten PC, van Dyk E, Braaf LM, Mulder L, Lips EH, de Ronde JJ, Holtman L, Wesseling J, Hauptmann M, Wessels LF, Linn SC, Nederlof PM.

Breast Cancer Res Treat. 2013 Jun;139(2):317-27. doi: 10.1007/s10549-013-2558-2. Epub 2013 May 14.

PMID:
23670131
18.

A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control.

van Dyk E, Reinders MJ, Wessels LF.

Nucleic Acids Res. 2013 May;41(9):e100. doi: 10.1093/nar/gkt155. Epub 2013 Mar 8.

19.

Impaired DNA repair and genomic stability in hereditary tyrosinemia type 1.

van Dyk E, Pretorius PJ.

Gene. 2012 Mar 1;495(1):56-61. doi: 10.1016/j.gene.2011.12.021. Epub 2011 Dec 23.

PMID:
22209984
20.

Pathology and immunohistochemistry of papillomavirus-associated cutaneous lesions in Cape mountain zebra, giraffe, sable antelope and African buffalo in South Africa.

Williams JH, van Dyk E, Nel PJ, Lane E, Van Wilpe E, Bengis RG, de Klerk-Lorist LM, van Heerden J.

J S Afr Vet Assoc. 2011 Jun;82(2):97-106. Erratum in: J S Afr Vet Assoc. 2011 Sep;82(3):185.

PMID:
22135923
21.

Detection and characterisation of papillomavirus in skin lesions of giraffe and sable antelope in South Africa.

van Dyk E, Bosman AM, van Wilpe E, Williams JH, Bengis RG, van Heerden J, Venter EH.

J S Afr Vet Assoc. 2011 Jun;82(2):80-5.

PMID:
22135920
22.

Point mutation instability (PIN) mutator phenotype as model for true back mutations seen in hereditary tyrosinemia type 1 - a hypothesis.

van Dyk E, Pretorius PJ.

J Inherit Metab Dis. 2012 May;35(3):407-11. doi: 10.1007/s10545-011-9401-x. Epub 2011 Oct 15.

PMID:
22002443
23.

Hereditary tyrosinemia type 1 metabolites impair DNA excision repair pathways.

van Dyk E, Steenkamp A, Koekemoer G, Pretorius PJ.

Biochem Biophys Res Commun. 2010 Oct 8;401(1):32-6. doi: 10.1016/j.bbrc.2010.09.002. Epub 2010 Sep 7.

PMID:
20828540
24.

Polymorphism and selection in the major histocompatibility complex DRA and DQA genes in the family Equidae.

Janova E, Matiasovic J, Vahala J, Vodicka R, Van Dyk E, Horin P.

Immunogenetics. 2009 Jul;61(7):513-27. doi: 10.1007/s00251-009-0380-0. Epub 2009 Jun 26.

PMID:
19557406
25.

Detection of bovine papillomavirus DNA in sarcoid-affected and healthy free-roaming zebra (Equus zebra) populations in South Africa.

van Dyk E, Oosthuizen MC, Bosman AM, Nel PJ, Zimmerman D, Venter EH.

J Virol Methods. 2009 Jun;158(1-2):141-51. doi: 10.1016/j.jviromet.2009.02.008. Epub 2009 Feb 14.

PMID:
19428583
26.

DNA damage and repair detected by the comet assay in lymphocytes of african petrol attendants: a pilot study.

Keretetse GS, Laubscher PJ, Du Plessis JL, Pretorius PJ, Van Der Westhuizen FH, Van Deventer E, Van Dyk E, Eloff FC, Van Aarde MN, Du Plessis LH.

Ann Occup Hyg. 2008 Oct;52(7):653-62. doi: 10.1093/annhyg/men047. Epub 2008 Jul 29.

PMID:
18664513
27.

High saturation solar light beam induced current scanning of solar cells.

Vorster FJ, van Dyk EE.

Rev Sci Instrum. 2007 Jan;78(1):013904.

PMID:
17503930
28.

DNA damage and repair in mammalian cells exposed to p-hydroxyphenylpyruvic acid.

van Dyk E, Pretorius PJ.

Biochem Biophys Res Commun. 2005 Dec 16;338(2):815-9. Epub 2005 Oct 26.

PMID:
16263080
29.

The second generation of the International Equine Gene Mapping Workshop half-sibling linkage map.

Guérin G, Bailey E, Bernoco D, Anderson I, Antczak DF, Bell K, Biros I, Bjørnstad G, Bowling AT, Brandon R, Caetano AR, Cholewinski G, Colling D, Eggleston M, Ellis N, Flynn J, Gralak B, Hasegawa T, Ketchum M, Lindgren G, Lyons LA, Millon LV, Mariat D, Murray J, Neau A, Røed K, Sandberg K, Skow LC, Tammen I, Tozaki T, Van Dyk E, Weiss B, Young A, Ziegle J.

Anim Genet. 2003 Jun;34(3):161-8.

PMID:
12755815
30.

Genetic variation in the feral horses of the Namib Desert, Namibia.

Cothran EG, van Dyk E, van der Merwe FJ.

J S Afr Vet Assoc. 2001 Mar;72(1):18-22.

PMID:
11563711
31.

The spread of weeds into sensitive areas by seeds in horse faeces.

van Dyk E, Neser S.

J S Afr Vet Assoc. 2000 Sep;71(3):173-4.

PMID:
11205166
32.

Overexpression of p53 in prostate carcinoma is associated with improved overall survival but not predictive of response to radiotherapy.

Incognito LS, Cazares LH, Schellhammer PF, Kuban DA, Van Dyk EO, Moriarty RP, Wright GL Jr, Somers KD.

Int J Oncol. 2000 Oct;17(4):761-9.

PMID:
10995889
33.

Genetic analysis of three South African horse breeds.

Cothran EG, van Dyk E.

J S Afr Vet Assoc. 1998 Dec;69(4):120-5.

PMID:
10192084
34.

[The detrimental effect of iodine as an intra-uterine instillation in mares].

van Dyk E, Lange AL.

J S Afr Vet Assoc. 1986 Dec;57(4):205-10. Afrikaans.

PMID:
3572955
35.

[The use of amikacin in the treatment of endometritis caused by Pseudomonas aeruginosa in mares].

van Dyk E, Immelman A, van Heerden JS.

J S Afr Vet Assoc. 1982 Jun;53(2):124-6. Afrikaans.

PMID:
6811742
36.

Myasthenia gravis in a Fox Terrier litter.

Jenkins WL, van Dyk E, McDonald CB.

J S Afr Vet Assoc. 1976 Mar;47(1):59-62.

PMID:
1263198

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