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Items: 25

1.

Complete sequence-based pathway analysis by differential on-chip DNA and RNA extraction from a single cell.

van Strijp D, Vulders RCM, Larsen NA, Schira J, Baerlocher L, van Driel MA, Pødenphant M, Hansen TS, Kristensen A, Mir KU, Olesen T, Verhaegh WFJ, Marie R, van der Zaag PJ.

Sci Rep. 2017 Sep 8;7(1):11030. doi: 10.1038/s41598-017-10704-4.

2.

Modulating crossover positioning by introducing large structural changes in chromosomes.

Ederveen A, Lai Y, van Driel MA, Gerats T, Peters JL.

BMC Genomics. 2015 Feb 15;16:89. doi: 10.1186/s12864-015-1276-z.

3.

MetIDB: a publicly accessible database of predicted and experimental 1H NMR spectra of flavonoids.

Mihaleva VV, te Beek TA, van Zimmeren F, Moco S, Laatikainen R, Niemitz M, Korhonen SP, van Driel MA, Vervoort J.

Anal Chem. 2013 Sep 17;85(18):8700-7. doi: 10.1021/ac4016837. Epub 2013 Aug 26.

PMID:
23930710
4.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

5.

ODoSE: a webserver for genome-wide calculation of adaptive divergence in prokaryotes.

Vos M, te Beek TA, van Driel MA, Huynen MA, Eyre-Walker A, van Passel MW.

PLoS One. 2013 May 6;8(5):e62447. doi: 10.1371/journal.pone.0062447. Print 2013.

6.

MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data.

Rojas-Chertó M, van Vliet M, Peironcely JE, van Doorn R, Kooyman M, te Beek T, van Driel MA, Hankemeier T, Reijmers T.

Bioinformatics. 2012 Oct 15;28(20):2707-9. doi: 10.1093/bioinformatics/bts486. Epub 2012 Jul 31.

7.

Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum.

Salcedo-Amaya AM, van Driel MA, Alako BT, Trelle MB, van den Elzen AM, Cohen AM, Janssen-Megens EM, van de Vegte-Bolmer M, Selzer RR, Iniguez AL, Green RD, Sauerwein RW, Jensen ON, Stunnenberg HG.

Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9655-60. doi: 10.1073/pnas.0902515106. Epub 2009 Jun 2.

8.

ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands.

Welboren WJ, van Driel MA, Janssen-Megens EM, van Heeringen SJ, Sweep FC, Span PN, Stunnenberg HG.

EMBO J. 2009 May 20;28(10):1418-28. doi: 10.1038/emboj.2009.88. Epub 2009 Apr 4.

9.

Characterization of genome-wide p53-binding sites upon stress response.

Smeenk L, van Heeringen SJ, Koeppel M, van Driel MA, Bartels SJ, Akkers RC, Denissov S, Stunnenberg HG, Lohrum M.

Nucleic Acids Res. 2008 Jun;36(11):3639-54. doi: 10.1093/nar/gkn232. Epub 2008 May 12.

10.

Genome-wide pattern of TCF7L2/TCF4 chromatin occupancy in colorectal cancer cells.

Hatzis P, van der Flier LG, van Driel MA, Guryev V, Nielsen F, Denissov S, Nijman IJ, Koster J, Santo EE, Welboren W, Versteeg R, Cuppen E, van de Wetering M, Clevers H, Stunnenberg HG.

Mol Cell Biol. 2008 Apr;28(8):2732-44. doi: 10.1128/MCB.02175-07. Epub 2008 Feb 11.

11.

Bioinformatics methods for identifying candidate disease genes.

van Driel MA, Brunner HG.

Hum Genomics. 2006 Jun;2(6):429-32.

12.

Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes.

Tiffin N, Adie E, Turner F, Brunner HG, van Driel MA, Oti M, Lopez-Bigas N, Ouzounis C, Perez-Iratxeta C, Andrade-Navarro MA, Adeyemo A, Patti ME, Semple CA, Hide W.

Nucleic Acids Res. 2006 Jun 6;34(10):3067-81. Print 2006.

13.

A text-mining analysis of the human phenome.

van Driel MA, Bruggeman J, Vriend G, Brunner HG, Leunissen JA.

Eur J Hum Genet. 2006 May;14(5):535-42.

14.

GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases.

van Driel MA, Cuelenaere K, Kemmeren PP, Leunissen JA, Brunner HG, Vriend G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W758-61.

15.

From syndrome families to functional genomics.

Brunner HG, van Driel MA.

Nat Rev Genet. 2004 Jul;5(7):545-51. Review. No abstract available.

PMID:
15211356
16.

Autosomal dominant rhegmatogenous retinal detachment associated with an Arg453Ter mutation in the COL2A1 gene.

Go SL, Maugeri A, Mulder JJ, van Driel MA, Cremers FP, Hoyng CB.

Invest Ophthalmol Vis Sci. 2003 Sep;44(9):4035-43.

PMID:
12939326
17.

Novel types of mutation in the choroideremia ( CHM) gene: a full-length L1 insertion and an intronic mutation activating a cryptic exon.

van den Hurk JA, van de Pol DJ, Wissinger B, van Driel MA, Hoefsloot LH, de Wijs IJ, van den Born LI, Heckenlively JR, Brunner HG, Zrenner E, Ropers HH, Cremers FP.

Hum Genet. 2003 Aug;113(3):268-75. Epub 2003 Jun 25.

PMID:
12827496
18.

A new web-based data mining tool for the identification of candidate genes for human genetic disorders.

van Driel MA, Cuelenaere K, Kemmeren PP, Leunissen JA, Brunner HG.

Eur J Hum Genet. 2003 Jan;11(1):57-63.

19.

Genomic structure and assessment of the retinally expressed RFamide-related peptide gene in dominant cystoid macular dystrophy.

Schulz HL, Stoehr H, White K, van Driel MA, Hoyng CB, Cremers F, Weber BH.

Mol Vis. 2002 Mar 19;8:67-71.

20.

Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa (RP12).

den Hollander AI, ten Brink JB, de Kok YJ, van Soest S, van den Born LI, van Driel MA, van de Pol DJ, Payne AM, Bhattacharya SS, Kellner U, Hoyng CB, Westerveld A, Brunner HG, Bleeker-Wagemakers EM, Deutman AF, Heckenlively JR, Cremers FP, Bergen AA.

Nat Genet. 1999 Oct;23(2):217-21.

PMID:
10508521
21.

Isolation and mapping of novel candidate genes for retinal disorders using suppression subtractive hybridization.

den Hollander AI, van Driel MA, de Kok YJ, van de Pol DJ, Hoyng CB, Brunner HG, Deutman AF, Cremers FP.

Genomics. 1999 Jun 15;58(3):240-9.

PMID:
10373321
22.

The 2588G-->C mutation in the ABCR gene is a mild frequent founder mutation in the Western European population and allows the classification of ABCR mutations in patients with Stargardt disease.

Maugeri A, van Driel MA, van de Pol DJ, Klevering BJ, van Haren FJ, Tijmes N, Bergen AA, Rohrschneider K, Blankenagel A, Pinckers AJ, Dahl N, Brunner HG, Deutman AF, Hoyng CB, Cremers FP.

Am J Hum Genet. 1999 Apr;64(4):1024-35.

23.

ABCR unites what ophthalmologists divide(s)

van Driel MA, Maugeri A, Klevering BJ, Hoyng CB, Cremers FP.

Ophthalmic Genet. 1998 Sep;19(3):117-22. Review.

PMID:
9810566
24.

Exclusive production of K+K- pi + pi - in photon-photon collisions.

Aihara H, Alston-Garnjost M, Armitage JC, Bakken JA, Barbaro-Galtieri A, Barker AR, Barnes AV, Barnett BA, Bengtsson H, Bintinger DL, Blumenfeld BJ, Bobbink GJ, Bross AD, Buchanan CD, Buijs A, Cain MP, Caldwell DO, Chamberlain O, Chien C, Clark AR, Cordier A, Dahl OI, Day CT, Derby KA, van Driel MA, Eberhard PH, Eisner AM, Erné FC, Fancher DL, Fujii H, Fujii T, Gabioud B, Gary JW, Gorn W, Hadley NJ, Hauptman JM, Hofmann W, Huth JE, Hylen J, Joshi UP, Kamae T, Kaye HS, Kees KH, Kenney RW, Kerth LT, Ko W, Koda RI, Kofler RR, Kwong KK, Lander RL, Langeveld WG, Layter JG, Linde FL, Lindsey CS, Loken SC, Lu A, Lu X, Lynch GR, Madansky L, Madaras RJ, Maeshima K, Magnuson BD, Marx JN, Maruyama K.

Phys Rev Lett. 1985 Jun 17;54(24):2564-2567. No abstract available.

PMID:
10031378
25.

Measurement of the total hadronic cross section in virtual photon-photon interactions.

Bintinger D, Kees KH, Masek GE, Miller ES, Thompson JR, Vernon W, White JT, Eisner AM, Palmer DA, Sullivan MK, Armitage JC, Buijs A, Van Driel MA, Erné FC, Langeveld WG, Paar HP, Sens JC, Timmer J, Van Uitert B, Cain MP, Ko W, Lander RL, Maeshima K, McNeil RR, Pellett DE, Smith JR, Williams MC, Caldwell DO, Joshi UP, Lu A, Schwitkis KA, Yellin SJ.

Phys Rev Lett. 1985 Feb 25;54(8):763-766. No abstract available.

PMID:
10031610

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