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Gingimaps: Protein Localization in the Oral Pathogen Porphyromonas gingivalis.

Gabarrini G, Grasso S, van Winkelhoff AJ, van Dijl JM.

Microbiol Mol Biol Rev. 2020 Jan 2;84(1). pii: e00032-19. doi: 10.1128/MMBR.00032-19. Print 2020 Feb 19. Review.


Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages.

da Cruz Campos AC, Cavallo FM, L Andrade N, van Dijl JM, Couto N, Zrimec J, Lo Ten Foe JR, P Rosa AC, V Damasco P, Friedrich AW, Chlebowicz-Flissikowska MA, Rossen JWA.

Microorganisms. 2019 Nov 6;7(11). pii: E534. doi: 10.3390/microorganisms7110534.


Heterogeneous antimicrobial activity in broncho-alveolar aspirates from mechanically ventilated intensive care unit patients.

Seinen J, Dieperink W, Mekonnen SA, Lisotto P, Harmsen HJM, Hiemstra B, Ott A, Schultz D, Lalk M, Oswald S, Hammerschmidt S, de Smet AMGA, van Dijl JM.

Virulence. 2019 Dec;10(1):879-891. doi: 10.1080/21505594.2019.1682797.


Ariadne's Thread in the Analytical Labyrinth of Membrane Proteins: Integration of Targeted and Shotgun Proteomics for Global Absolute Quantification of Membrane Proteins.

Antelo-Varela M, Bartel J, Quesada-Ganuza A, Appel K, Bernal-Cabas M, Sura T, Otto A, Rasmussen M, van Dijl JM, Nielsen A, Maaß S, Becher D.

Anal Chem. 2019 Sep 17;91(18):11972-11980. doi: 10.1021/acs.analchem.9b02869. Epub 2019 Sep 3.


Transport of Folded Proteins by the Tat System.

Frain KM, Robinson C, van Dijl JM.

Protein J. 2019 Aug;38(4):377-388. doi: 10.1007/s10930-019-09859-y. Review.


Publisher Correction: In vitro imaging of bacteria using 18F-fluorodeoxyglucose micro positron emission tomography.

Heuker M, Sijbesma JWA, Aguilar Suárez R, de Jong JR, Boersma HH, Luurtsema G, Elsinga PH, Glaudemans AWJM, van Dam GM, van Dijl JM, Slart RHJA, van Oosten M.

Sci Rep. 2019 Jul 17;9(1):10535. doi: 10.1038/s41598-019-46786-5.


The Twin-Arginine Pathway for Protein Secretion.

Frain KM, van Dijl JM, Robinson C.

EcoSal Plus. 2019 Jun;8(2). doi: 10.1128/ecosalplus.ESP-0040-2018.


Exoproteome Heterogeneity among Closely Related Staphylococcus aureus t437 Isolates and Possible Implications for Virulence.

Zhao X, Palma Medina LM, Stobernack T, Glasner C, de Jong A, Utari P, Setroikromo R, Quax WJ, Otto A, Becher D, Buist G, van Dijl JM.

J Proteome Res. 2019 Jul 5;18(7):2859-2874. doi: 10.1021/acs.jproteome.9b00179. Epub 2019 Jun 5.


Differential expression of a prophage-encoded glycocin and its immunity protein suggests a mutualistic strategy of a phage and its host.

Denham EL, Piersma S, Rinket M, Reilman E, de Goffau MC, van Dijl JM.

Sci Rep. 2019 Feb 26;9(1):2845. doi: 10.1038/s41598-019-39169-3.


Metabolic Cross-talk Between Human Bronchial Epithelial Cells and Internalized Staphylococcus aureus as a Driver for Infection.

Palma Medina LM, Becker AK, Michalik S, Yedavally H, Raineri EJM, Hildebrandt P, Gesell Salazar M, Surmann K, Pförtner H, Mekonnen SA, Salvati A, Kaderali L, van Dijl JM, Völker U.

Mol Cell Proteomics. 2019 May;18(5):892-908. doi: 10.1074/mcp.RA118.001138. Epub 2019 Feb 26.


Multimodal imaging guides surgical management in a preclinical spinal implant infection model.

Zoller SD, Park HY, Olafsen T, Zamilpa C, Burke ZD, Blumstein G, Sheppard WL, Hamad CD, Hori KR, Tseng JC, Czupryna J, McMannus C, Lee JT, Bispo M, Romero Pastrana F, Raineri EJ, Miller JF, Miller LS, van Dijl JM, Francis KP, Bernthal NM.

JCI Insight. 2019 Feb 7;4(3). pii: 124813. doi: 10.1172/jci.insight.124813. [Epub ahead of print]


Less Is More: Toward a Genome-Reduced Bacillus Cell Factory for "Difficult Proteins".

Aguilar Suárez R, Stülke J, van Dijl JM.

ACS Synth Biol. 2019 Jan 18;8(1):99-108. doi: 10.1021/acssynbio.8b00342. Epub 2018 Dec 27.


A Secreted Bacterial Peptidylarginine Deiminase Can Neutralize Human Innate Immune Defenses.

Stobernack T, du Teil Espina M, Mulder LM, Palma Medina LM, Piebenga DR, Gabarrini G, Zhao X, Janssen KMJ, Hulzebos J, Brouwer E, Sura T, Becher D, van Winkelhoff AJ, Götz F, Otto A, Westra J, van Dijl JM.

mBio. 2018 Oct 30;9(5). pii: e01704-18. doi: 10.1128/mBio.01704-18.


Metabolic niche adaptation of community- and hospital-associated methicillin-resistant Staphylococcus aureus.

Mekonnen SA, Palma Medina LM, Michalik S, Loreti MG, Gesell Salazar M, van Dijl JM, Völker U.

J Proteomics. 2019 Feb 20;193:154-161. doi: 10.1016/j.jprot.2018.10.005. Epub 2018 Oct 12.


Enrichment of Cell Surface-Associated Proteins in Gram-Positive Bacteria by Biotinylation or Trypsin Shaving for Mass Spectrometry Analysis.

Bonn F, Maaß S, van Dijl JM.

Methods Mol Biol. 2018;1841:35-43. doi: 10.1007/978-1-4939-8695-8_4.


Inhibition of Rho Activity Increases Expression of SaeRS-Dependent Virulence Factor Genes in Staphylococcus aureus, Showing a Link between Transcription Termination, Antibiotic Action, and Virulence.

Nagel A, Michalik S, Debarbouille M, Hertlein T, Gesell Salazar M, Rath H, Msadek T, Ohlsen K, van Dijl JM, Völker U, Mäder U.

mBio. 2018 Sep 18;9(5). pii: e01332-18. doi: 10.1128/mBio.01332-18.


Talk to your gut: the oral-gut microbiome axis and its immunomodulatory role in the etiology of rheumatoid arthritis.

du Teil Espina M, Gabarrini G, Harmsen HJM, Westra J, van Winkelhoff AJ, van Dijl JM.

FEMS Microbiol Rev. 2019 Jan 1;43(1):1-18. doi: 10.1093/femsre/fuy035. Review.


An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae.

Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E.

Virulence. 2018;9(1):1377-1389. doi: 10.1080/21505594.2018.1509666.


Dropping anchor: attachment of peptidylarginine deiminase via A-LPS to secreted outer membrane vesicles of Porphyromonas gingivalis.

Gabarrini G, Heida R, van Ieperen N, Curtis MA, van Winkelhoff AJ, van Dijl JM.

Sci Rep. 2018 Jun 12;8(1):8949. doi: 10.1038/s41598-018-27223-5.


There's no place like OM: Vesicular sorting and secretion of the peptidylarginine deiminase of Porphyromonas gingivalis.

Gabarrini G, Palma Medina LM, Stobernack T, Prins RC, du Teil Espina M, Kuipers J, Chlebowicz MA, Rossen JWA, van Winkelhoff AJ, van Dijl JM.

Virulence. 2018 Jan 1;9(1):456-464. doi: 10.1080/21505594.2017.1421827.


Human antibody responses against non-covalently cell wall-bound Staphylococcus aureus proteins.

Romero Pastrana F, Neef J, Koedijk DGAM, de Graaf D, Duipmans J, Jonkman MF, Engelmann S, van Dijl JM, Buist G.

Sci Rep. 2018 Feb 19;8(1):3234. doi: 10.1038/s41598-018-21724-z.


Ex Vivo Tracer Efficacy in Optical Imaging of Staphylococcus Aureus Nuclease Activity.

Rosman CWK, Romero Pastrana F, Buist G, Heuker M, van Oosten M, McNamara JO, van Dam GM, van Dijl JM.

Sci Rep. 2018 Jan 22;8(1):1305. doi: 10.1038/s41598-018-19289-y.


Antibiotic Resistance Plasmids Cointegrated into a Megaplasmid Harboring the blaOXA-427 Carbapenemase Gene.

Desmet S, Nepal S, van Dijl JM, Van Ranst M, Chlebowicz MA, Rossen JW, Van Houdt JKJ, Maes P, Lagrou K, Bathoorn E.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01448-17. doi: 10.1128/AAC.01448-17. Print 2018 Mar.


Conserved Citrullinating Exoenzymes in Porphyromonas Species.

Gabarrini G, Chlebowicz MA, Vega Quiroz ME, Veloo ACM, Rossen JWA, Harmsen HJM, Laine ML, van Dijl JM, van Winkelhoff AJ.

J Dent Res. 2018 May;97(5):556-562. doi: 10.1177/0022034517747575. Epub 2018 Jan 3.


From the wound to the bench: exoproteome interplay between wound-colonizing Staphylococcus aureus strains and co-existing bacteria.

García-Pérez AN, de Jong A, Junker S, Becher D, Chlebowicz MA, Duipmans JC, Jonkman MF, van Dijl JM.

Virulence. 2018 Jan 1;9(1):363-378. doi: 10.1080/21505594.2017.1395129.


Noninvasive optical and nuclear imaging of Staphylococcus-specific infection with a human monoclonal antibody-based probe.

Romero Pastrana F, Thompson JM, Heuker M, Hoekstra H, Dillen CA, Ortines RV, Ashbaugh AG, Pickett JE, Linssen MD, Bernthal NM, Francis KP, Buist G, van Oosten M, van Dam GM, Thorek DLJ, Miller LS, van Dijl JM.

Virulence. 2018 Jan 1;9(1):262-272. doi: 10.1080/21505594.2017.1403004. Epub 2017 Dec 26.


Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings.

Amissah NA, Buultjens AH, Ablordey A, van Dam L, Opoku-Ware A, Baines SL, Bulach D, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, Seemann T, van Dijl JM, Stienstra Y, Stinear TP, Rossen JW.

Front Microbiol. 2017 Oct 6;8:1906. doi: 10.3389/fmicb.2017.01906. eCollection 2017.


A Lactococcus lactis expression vector set with multiple affinity tags to facilitate isolation and direct labeling of heterologous secreted proteins.

Romero Pastrana F, Neef J, van Dijl JM, Buist G.

Appl Microbiol Biotechnol. 2017 Nov;101(22):8139-8149. doi: 10.1007/s00253-017-8524-x. Epub 2017 Oct 2.


Genetic loci of Staphylococcus aureus associated with anti-neutrophil cytoplasmic autoantibody (ANCA)-associated vasculitides.

Glasner C, de Goffau MC, van Timmeren MM, Schulze ML, Jansen B, Tavakol M, van Wamel WJB, Stegeman CA, Kallenberg CGM, Arends JP, Rossen JW, Heeringa P, van Dijl JM.

Sci Rep. 2017 Sep 22;7(1):12211. doi: 10.1038/s41598-017-12450-z.


Differential epitope recognition in the immunodominant staphylococcal antigen A of Staphylococcus aureus by mouse versus human IgG antibodies.

Koedijk DGAM, Pastrana FR, Hoekstra H, Berg SVD, Back JW, Kerstholt C, Prins RC, Bakker-Woudenberg IAJM, van Dijl JM, Buist G.

Sci Rep. 2017 Aug 15;7(1):8141. doi: 10.1038/s41598-017-08182-9.


Epidemiology of Staphylococcus aureus in a burn unit of a tertiary care center in Ghana.

Amissah NA, van Dam L, Ablordey A, Ampomah OW, Prah I, Tetteh CS, van der Werf TS, Friedrich AW, Rossen JW, van Dijl JM, Stienstra Y.

PLoS One. 2017 Jul 13;12(7):e0181072. doi: 10.1371/journal.pone.0181072. eCollection 2017.


In vitro imaging of bacteria using 18F-fluorodeoxyglucose micro positron emission tomography.

Heuker M, Sijbesma JWA, Aguilar Suárez R, de Jong JR, Boersma HH, Luurtsema G, Elsinga PH, Glaudemans AWJM, van Dam GM, van Dijl JM, Slart RHJA, van Oosten M.

Sci Rep. 2017 Jul 10;7(1):4973. doi: 10.1038/s41598-017-05403-z. Erratum in: Sci Rep. 2019 Jul 17;9(1):10535.


Signatures of cytoplasmic proteins in the exoproteome distinguish community- and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages.

Mekonnen SA, Palma Medina LM, Glasner C, Tsompanidou E, de Jong A, Grasso S, Schaffer M, Mäder U, Larsen AR, Gumpert H, Westh H, Völker U, Otto A, Becher D, van Dijl JM.

Virulence. 2017 Aug 18;8(6):891-907. doi: 10.1080/21505594.2017.1325064. Epub 2017 May 5.


Virulence potential of Staphylococcus aureus isolates from Buruli ulcer patients.

Amissah NA, Chlebowicz MA, Ablordey A, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, van Dijl JM, Stienstra Y, Rossen JW.

Int J Med Microbiol. 2017 Jun;307(4-5):223-232. doi: 10.1016/j.ijmm.2017.04.002. Epub 2017 Apr 19.


Intramembrane protease RasP boosts protein production in Bacillus.

Neef J, Bongiorni C, Goosens VJ, Schmidt B, van Dijl JM.

Microb Cell Fact. 2017 Apr 4;16(1):57. doi: 10.1186/s12934-017-0673-1.


A human monoclonal antibody that specifically binds and inhibits the staphylococcal complement inhibitor protein SCIN.

Hoekstra H, Romero Pastrana F, Bonarius HPJ, van Kessel KPM, Elsinga GS, Kooi N, Groen H, van Dijl JM, Buist G.

Virulence. 2018 Jan 1;9(1):70-82. doi: 10.1080/21505594.2017.1294297. Epub 2017 May 8.


Preclinical Evaluation of Photoacoustic Imaging as a Novel Noninvasive Approach to Detect an Orthopaedic Implant Infection.

Wang Y, Thompson JM, Ashbaugh AG, Khodakivskyi P, Budin G, Sinisi R, Heinmiller A, van Oosten M, van Dijl JM, van Dam GM, Francis KP, Bernthal NM, Dubikovskaya EA, Miller LS.

J Am Acad Orthop Surg. 2017 Feb;25 Suppl 1:S7-S12. doi: 10.5435/JAAOS-D-16-00630.


Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.

Mars RA, Nicolas P, Denham EL, van Dijl JM.

Microbiol Mol Biol Rev. 2016 Oct 26;80(4):1029-1057. Print 2016 Dec. Review.


Extracellular Proteome and Citrullinome of the Oral Pathogen Porphyromonas gingivalis.

Stobernack T, Glasner C, Junker S, Gabarrini G, de Smit M, de Jong A, Otto A, Becher D, van Winkelhoff AJ, van Dijl JM.

J Proteome Res. 2016 Dec 2;15(12):4532-4543. Epub 2016 Oct 19.


Genetic features of livestock-associated Staphylococcus aureus ST9 isolates from Chinese pigs that carry the lsa(E) gene for quinupristin/dalfopristin resistance.

Yan X, Li Z, Chlebowicz MA, Tao X, Ni M, Hu Y, Li Z, Grundmann H, Murray S, Pascoe B, Sheppard SK, Bo X, van Dijl JM, Du P, Zhang M, You Y, Yu X, Meng F, Wang S, Zhang J.

Int J Med Microbiol. 2016 Dec;306(8):722-729. doi: 10.1016/j.ijmm.2016.08.001. Epub 2016 Aug 10.


Preclinical studies and prospective clinical applications for bacteria-targeted imaging: the future is bright.

Heuker M, Gomes A, van Dijl JM, van Dam GM, Friedrich AW, Sinha B, van Oosten M.

Clin Transl Imaging. 2016;4:253-264. Epub 2016 Jul 16. Review.


Adaptive immune response to lipoproteins of Staphylococcus aureus in healthy subjects.

Vu CH, Kolata J, Stentzel S, Beyer A, Gesell Salazar M, Steil L, Pané-Farré J, Rühmling V, Engelmann S, Götz F, van Dijl JM, Hecker M, Mäder U, Schmidt F, Völker U, Bröker BM.

Proteomics. 2016 Oct;16(20):2667-2677. doi: 10.1002/pmic.201600151. Epub 2016 Aug 3.


Twin-Arginine Protein Translocation.

Goosens VJ, van Dijl JM.

Curr Top Microbiol Immunol. 2017;404:69-94. doi: 10.1007/82_2016_7. Review.


Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.

Mäder U, Nicolas P, Depke M, Pané-Farré J, Debarbouille M, van der Kooi-Pol MM, Guérin C, Dérozier S, Hiron A, Jarmer H, Leduc A, Michalik S, Reilman E, Schaffer M, Schmidt F, Bessières P, Noirot P, Hecker M, Msadek T, Völker U, van Dijl JM.

PLoS Genet. 2016 Apr 1;12(4):e1005962. doi: 10.1371/journal.pgen.1005962. eCollection 2016 Apr.


Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions.

Ploss TN, Reilman E, Monteferrante CG, Denham EL, Piersma S, Lingner A, Vehmaanperä J, Lorenz P, van Dijl JM.

Microb Cell Fact. 2016 Mar 29;15:57. doi: 10.1186/s12934-016-0455-1.


Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300.

Bonn F, Pané-Farré J, Schlüter R, Schaffer M, Fuchs S, Bernhardt J, Riedel K, Otto A, Völker U, van Dijl JM, Hecker M, Mäder U, Becher D.

Int J Med Microbiol. 2016 May;306(3):131-40. doi: 10.1016/j.ijmm.2016.02.004. Epub 2016 Feb 17.


How Does Streptococcus pneumoniae Invade the Brain?

Iovino F, Seinen J, Henriques-Normark B, van Dijl JM.

Trends Microbiol. 2016 Apr;24(4):307-315. doi: 10.1016/j.tim.2015.12.012. Epub 2016 Jan 21. Review.


Towards an antimicrobial 'microglove'.

Reilman E, Hagting JG, Flipsen T, Ulmer H, van Dijl JM.

Sci Rep. 2015 Nov 13;5:16679. doi: 10.1038/srep16679.


The peptidylarginine deiminase gene is a conserved feature of Porphyromonas gingivalis.

Gabarrini G, de Smit M, Westra J, Brouwer E, Vissink A, Zhou K, Rossen JW, Stobernack T, van Dijl JM, van Winkelhoff AJ.

Sci Rep. 2015 Sep 25;5:13936. doi: 10.1038/srep13936.


A comparison of Percutaneous femoral access in Endovascular Repair versus Open femoral access (PiERO): study protocol for a randomized controlled trial.

Vierhout BP, Saleem BR, Ott A, van Dijl JM, de Kempenaer TD, Pierie ME, Bottema JT, Zeebregts CJ.

Trials. 2015 Sep 14;16:408. doi: 10.1186/s13063-015-0911-y.

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