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Items: 1 to 50 of 131

1.

Cofactor Specificity of the Bifunctional Alcohol and Aldehyde Dehydrogenase (AdhE) in Wild-Type and Mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum.

Zheng T, Olson DG, Tian L, Bomble YJ, Himmel ME, Lo J, Hon S, Shaw AJ, van Dijken JP, Lynd LR.

J Bacteriol. 2015 Aug 1;197(15):2610-9. doi: 10.1128/JB.00232-15. Epub 2015 May 26.

2.

The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading.

Holwerda EK, Thorne PG, Olson DG, Amador-Noguez D, Engle NL, Tschaplinski TJ, van Dijken JP, Lynd LR.

Biotechnol Biofuels. 2014 Oct 21;7(1):155. doi: 10.1186/s13068-014-0155-1. eCollection 2014.

3.

Atypical glycolysis in Clostridium thermocellum.

Zhou J, Olson DG, Argyros DA, Deng Y, van Gulik WM, van Dijken JP, Lynd LR.

Appl Environ Microbiol. 2013 May;79(9):3000-8. doi: 10.1128/AEM.04037-12. Epub 2013 Feb 22.

4.

Effects of acetic acid on the kinetics of xylose fermentation by an engineered, xylose-isomerase-based Saccharomyces cerevisiae strain.

Bellissimi E, van Dijken JP, Pronk JT, van Maris AJ.

FEMS Yeast Res. 2009 May;9(3):358-64. doi: 10.1111/j.1567-1364.2009.00487.x.

5.

Malic acid production by Saccharomyces cerevisiae: engineering of pyruvate carboxylation, oxaloacetate reduction, and malate export.

Zelle RM, de Hulster E, van Winden WA, de Waard P, Dijkema C, Winkler AA, Geertman JM, van Dijken JP, Pronk JT, van Maris AJ.

Appl Environ Microbiol. 2008 May;74(9):2766-77. doi: 10.1128/AEM.02591-07. Epub 2008 Mar 14.

6.

Development of efficient xylose fermentation in Saccharomyces cerevisiae: xylose isomerase as a key component.

van Maris AJ, Winkler AA, Kuyper M, de Laat WT, van Dijken JP, Pronk JT.

Adv Biochem Eng Biotechnol. 2007;108:179-204. Review.

PMID:
17846724
7.

Formate as an auxiliary substrate for glucose-limited cultivation of Penicillium chrysogenum: impact on penicillin G production and biomass yield.

Harris DM, van der Krogt ZA, van Gulik WM, van Dijken JP, Pronk JT.

Appl Environ Microbiol. 2007 Aug;73(15):5020-5. Epub 2007 Jun 1.

8.

Engineering of Saccharomyces cerevisiae for efficient anaerobic alcoholic fermentation of L-arabinose.

Wisselink HW, Toirkens MJ, del Rosario Franco Berriel M, Winkler AA, van Dijken JP, Pronk JT, van Maris AJ.

Appl Environ Microbiol. 2007 Aug;73(15):4881-91. Epub 2007 Jun 1.

10.

Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: current status.

van Maris AJ, Abbott DA, Bellissimi E, van den Brink J, Kuyper M, Luttik MA, Wisselink HW, Scheffers WA, van Dijken JP, Pronk JT.

Antonie Van Leeuwenhoek. 2006 Nov;90(4):391-418. Epub 2006 Oct 11. Review.

PMID:
17033882
11.

Physiological characterization and fed-batch production of an extracellular maltase of Schizosaccharomyces pombe CBS 356.

Jansen ML, Krook DJ, De Graaf K, van Dijken JP, Pronk JT, de Winde JH.

FEMS Yeast Res. 2006 Sep;6(6):888-901.

12.

Physiological and genetic engineering of cytosolic redox metabolism in Saccharomyces cerevisiae for improved glycerol production.

Geertman JM, van Maris AJ, van Dijken JP, Pronk JT.

Metab Eng. 2006 Nov;8(6):532-42. Epub 2006 Jun 30.

PMID:
16891140
13.

The Low Biomass Yields of the Acetic Acid Bacterium Acetobacter pasteurianus Are Due to a Low Stoichiometry of Respiration-Coupled Proton Translocation.

Luttik M, Van Spanning R, Schipper D, Van Dijken JP, Pronk JT.

Appl Environ Microbiol. 1997 Sep;63(9):3345-51.

14.

Enzymic analysis of NADPH metabolism in beta-lactam-producing Penicillium chrysogenum: presence of a mitochondrial NADPH dehydrogenase.

Harris DM, Diderich JA, van der Krogt ZA, Luttik MA, Raamsdonk LM, Bovenberg RA, van Gulik WM, van Dijken JP, Pronk JT.

Metab Eng. 2006 Mar;8(2):91-101. Epub 2005 Oct 25.

PMID:
16253533
15.

Use of the yeast Hansenula polymorpha (Pichia angusta) to remove contaminating sugars from ethyl beta-D-fructofuranoside produced during sucrose ethanolysis catalysed by invertase.

van der Heijden AM, van Hoek P, Kaliterna J, van Dijken JP, van Rantwijk F, Pronk JT.

J Biosci Bioeng. 1999;87(1):82-6.

PMID:
16232429
16.

Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting Saccharomyces cerevisiae strain.

Kuyper M, Toirkens MJ, Diderich JA, Winkler AA, van Dijken JP, Pronk JT.

FEMS Yeast Res. 2005 Jul;5(10):925-34.

17.
18.

Microbial catalysis and metabolic engineering.

van Dijken JP, Luli GM.

Appl Biochem Biotechnol. 2005 Spring;121-124:375-7. No abstract available.

PMID:
15917614
19.

Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation.

Kuyper M, Hartog MM, Toirkens MJ, Almering MJ, Winkler AA, van Dijken JP, Pronk JT.

FEMS Yeast Res. 2005 Feb;5(4-5):399-409.

20.

Microbial export of lactic and 3-hydroxypropanoic acid: implications for industrial fermentation processes.

van Maris AJ, Konings WN, van Dijken JP, Pronk JT.

Metab Eng. 2004 Oct;6(4):245-55. Review.

PMID:
15491854
21.
22.
23.

Directed evolution of pyruvate decarboxylase-negative Saccharomyces cerevisiae, yielding a C2-independent, glucose-tolerant, and pyruvate-hyperproducing yeast.

van Maris AJ, Geertman JM, Vermeulen A, Groothuizen MK, Winkler AA, Piper MD, van Dijken JP, Pronk JT.

Appl Environ Microbiol. 2004 Jan;70(1):159-66.

24.

High-level functional expression of a fungal xylose isomerase: the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae?

Kuyper M, Harhangi HR, Stave AK, Winkler AA, Jetten MS, de Laat WT, den Ridder JJ, Op den Camp HJ, van Dijken JP, Pronk JT.

FEMS Yeast Res. 2003 Oct;4(1):69-78.

25.

Xylose metabolism in the anaerobic fungus Piromyces sp. strain E2 follows the bacterial pathway.

Harhangi HR, Akhmanova AS, Emmens R, van der Drift C, de Laat WT, van Dijken JP, Jetten MS, Pronk JT, Op den Camp HJ.

Arch Microbiol. 2003 Aug;180(2):134-41. Epub 2003 Jun 13.

PMID:
12811467
26.
27.

Two mechanisms for oxidation of cytosolic NADPH by Kluyveromyces lactis mitochondria.

Overkamp KM, Bakker BM, Steensma HY, van Dijken JP, Pronk JT.

Yeast. 2002 Jul;19(10):813-24.

28.

Metabolic engineering of glycerol production in Saccharomyces cerevisiae.

Overkamp KM, Bakker BM, Kötter P, Luttik MA, Van Dijken JP, Pronk JT.

Appl Environ Microbiol. 2002 Jun;68(6):2814-21.

29.

Functional analysis of structural genes for NAD(+)-dependent formate dehydrogenase in Saccharomyces cerevisiae.

Overkamp KM, Kötter P, van der Hoek R, Schoondermark-Stolk S, Luttik MA, van Dijken JP, Pronk JT.

Yeast. 2002 Apr;19(6):509-20.

30.

Novel pathway for alcoholic fermentation of delta-gluconolactone in the yeast Saccharomyces bulderi.

van Dijken JP, van Tuijl A, Luttik MA, Middelhoven WJ, Pronk JT.

J Bacteriol. 2002 Feb;184(3):672-8.

31.

Human acylphosphatase cannot replace phosphoglycerate kinase in Saccharomyces cerevisiae.

Van Hoek P, Modesti A, Ramponi G, Kötter P, van Dijken JP, Pron JT.

Antonie Van Leeuwenhoek. 2001 Oct;80(1):11-7.

PMID:
11761363
32.

Oxygen requirements of the food spoilage yeast Zygosaccharomyces bailii in synthetic and complex media.

Rodrigues F, Côrte-Real M, Leão C, van Dijken JP, Pronk JT.

Appl Environ Microbiol. 2001 May;67(5):2123-8.

33.

Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae.

Bakker BM, Overkamp KM, van Maris AJ, Kötter P, Luttik MA, van Dijken JP, Pronk JT.

FEMS Microbiol Rev. 2001 Jan;25(1):15-37. Review.

34.

The Saccharomyces cerevisiae ICL2 gene encodes a mitochondrial 2-methylisocitrate lyase involved in propionyl-coenzyme A metabolism.

Luttik MA, Kötter P, Salomons FA, van der Klei IJ, van Dijken JP, Pronk JT.

J Bacteriol. 2000 Dec;182(24):7007-13.

35.

The mitochondrial alcohol dehydrogenase Adh3p is involved in a redox shuttle in Saccharomyces cerevisiae.

Bakker BM, Bro C, Kötter P, Luttik MA, van Dijken JP, Pronk JT.

J Bacteriol. 2000 Sep;182(17):4730-7.

36.

Regulation of fermentative capacity and levels of glycolytic enzymes in chemostat cultures of Saccharomyces cerevisiae.

van Hoek P, van Dijken JP, Pronk JT.

Enzyme Microb Technol. 2000 Jun 1;26(9-10):724-736.

PMID:
10862878
37.

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains.

van Dijken JP, Bauer J, Brambilla L, Duboc P, Francois JM, Gancedo C, Giuseppin ML, Heijnen JJ, Hoare M, Lange HC, Madden EA, Niederberger P, Nielsen J, Parrou JL, Petit T, Porro D, Reuss M, van Riel N, Rizzi M, Steensma HY, Verrips CT, Vindeløv J, Pronk JT.

Enzyme Microb Technol. 2000 Jun 1;26(9-10):706-714.

PMID:
10862876
38.

Regulation of pyruvate metabolism in chemostat cultures of Kluyveromyces lactis CBS 2359.

Zeeman AM, Kuyper M, Pronk JT, van Dijken JP, Steensma HY.

Yeast. 2000 May;16(7):611-20.

39.

Fermentative capacity in high-cell-density fed-batch cultures of baker's yeast.

van Hoek P, de Hulster E, van Dijken JP, Pronk JT.

Biotechnol Bioeng. 2000 Jun 5;68(5):517-23.

PMID:
10797237
40.

In vivo analysis of the mechanisms for oxidation of cytosolic NADH by Saccharomyces cerevisiae mitochondria.

Overkamp KM, Bakker BM, Kötter P, van Tuijl A, de Vries S, van Dijken JP, Pronk JT.

J Bacteriol. 2000 May;182(10):2823-30.

41.

Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae.

ter Linde JJ, Liang H, Davis RW, Steensma HY, van Dijken JP, Pronk JT.

J Bacteriol. 1999 Dec;181(24):7409-13.

42.

Steady-state and transient-state analysis of growth and metabolite production in a Saccharomyces cerevisiae strain with reduced pyruvate-decarboxylase activity.

Flikweert MT, Kuyper M, van Maris AJ, Kötter P, van Dijken JP, Pronk JT.

Biotechnol Bioeng. 1999;66(1):42-50.

PMID:
10556793
43.

By-product formation during exposure of respiring Saccharomyces cerevisiae cultures to excess glucose is not caused by a limited capacity of pyruvate carboxylase.

Bauer J, Luttik MA, Flores CL, van Dijken JP, Pronk JT, Niederberger P.

FEMS Microbiol Lett. 1999 Oct 1;179(1):107-13.

44.
45.

Glucose uptake kinetics and transcription of HXT genes in chemostat cultures of Saccharomyces cerevisiae.

Diderich JA, Schepper M, van Hoek P, Luttik MA, van Dijken JP, Pronk JT, Klaassen P, Boelens HF, de Mattos MJ, van Dam K, Kruckeberg AL.

J Biol Chem. 1999 May 28;274(22):15350-9.

46.

Growth requirements of pyruvate-decarboxylase-negative Saccharomyces cerevisiae.

Flikweert MT, de Swaaf M, van Dijken JP, Pronk JT.

FEMS Microbiol Lett. 1999 May 1;174(1):73-9.

47.

Fluxes and enzyme activities in central metabolism of myeloma cells grown in chemostat culture.

Vriezen N, van Dijken JP.

Biotechnol Bioeng. 1998 Jul 5;59(1):28-39.

PMID:
10099311
48.

Physiological characterisation of a pyruvate-carboxylase-negative Saccharomyces cerevisiae mutant in batch and chemostat cultures.

de Jong-Gubbels P, Bauer J, Niederberger P, Stückrath I, Kötter P, van Dijken JP, Pronk JT.

Antonie Van Leeuwenhoek. 1998 Nov;74(4):253-63.

PMID:
10081585
49.

NADH reoxidation does not control glycolytic flux during exposure of respiring Saccharomyces cerevisiae cultures to glucose excess.

Brambilla L, Bolzani D, Compagno C, Carrera V, van Dijken JP, Pronk JT, Ranzi BM, Alberghina L, Porro D.

FEMS Microbiol Lett. 1999 Feb 15;171(2):133-40.

50.

Inactivation of the Kluyveromyces lactis KlPDA1 gene leads to loss of pyruvate dehydrogenase activity, impairs growth on glucose and triggers aerobic alcoholic fermentation.

Zeeman AM, Luttik MA, Thiele C, van Dijken JP, Pronk JT, Steensma HY.

Microbiology. 1998 Dec;144 ( Pt 12):3437-46.

PMID:
9884236

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