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Items: 38

1.

CiliaCarta: An integrated and validated compendium of ciliary genes.

van Dam TJP, Kennedy J, van der Lee R, de Vrieze E, Wunderlich KA, Rix S, Dougherty GW, Lambacher NJ, Li C, Jensen VL, Leroux MR, Hjeij R, Horn N, Texier Y, Wissinger Y, van Reeuwijk J, Wheway G, Knapp B, Scheel JF, Franco B, Mans DA, van Wijk E, Képès F, Slaats GG, Toedt G, Kremer H, Omran H, Szymanska K, Koutroumpas K, Ueffing M, Nguyen TT, Letteboer SJF, Oud MM, van Beersum SEC, Schmidts M, Beales PL, Lu Q, Giles RH, Szklarczyk R, Russell RB, Gibson TJ, Johnson CA, Blacque OE, Wolfrum U, Boldt K, Roepman R, Hernandez-Hernandez V, Huynen MA.

PLoS One. 2019 May 16;14(5):e0216705. doi: 10.1371/journal.pone.0216705. eCollection 2019.

2.

Inferring the Evolutionary History of Your Favorite Protein: A Guide for Molecular Biologists.

van Hooff JJE, Tromer E, van Dam TJP, Kops GJPL, Snel B.

Bioessays. 2019 May;41(5):e1900006. doi: 10.1002/bies.201900006.

PMID:
31026339
3.

Accelerating changes in ice mass within Greenland, and the ice sheet's sensitivity to atmospheric forcing.

Bevis M, Harig C, Khan SA, Brown A, Simons FJ, Willis M, Fettweis X, van den Broeke MR, Madsen FB, Kendrick E, Caccamise DJ 2nd, van Dam T, Knudsen P, Nylen T.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):1934-1939. doi: 10.1073/pnas.1806562116. Epub 2019 Jan 22.

4.

Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites.

Meerstein-Kessel L, van der Lee R, Stone W, Lanke K, Baker DA, Alano P, Silvestrini F, Janse CJ, Khan SM, van de Vegte-Bolmer M, Graumans W, Siebelink-Stoter R, Kooij TWA, Marti M, Drakeley C, Campo JJ, van Dam TJP, Sauerwein R, Bousema T, Huynen MA.

Sci Rep. 2018 Jan 11;8(1):410. doi: 10.1038/s41598-017-18840-7.

5.

The Gene Ontology of eukaryotic cilia and flagella.

Roncaglia P, van Dam TJP, Christie KR, Nacheva L, Toedt G, Huynen MA, Huntley RP, Gibson TJ, Lomax J.

Cilia. 2017 Nov 16;6:10. doi: 10.1186/s13630-017-0054-8. eCollection 2017.

6.

Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts.

van der Lee R, Wiel L, van Dam TJP, Huynen MA.

Nucleic Acids Res. 2017 Oct 13;45(18):10634-10648. doi: 10.1093/nar/gkx704.

7.

The Role of Efflux Pumps in Tuberculosis Treatment and Their Promise as a Target in Drug Development: Unraveling the Black Box.

Te Brake LHM, de Knegt GJ, de Steenwinkel JE, van Dam TJP, Burger DM, Russel FGM, van Crevel R, Koenderink JB, Aarnoutse RE.

Annu Rev Pharmacol Toxicol. 2018 Jan 6;58:271-291. doi: 10.1146/annurev-pharmtox-010617-052438. Epub 2017 Jul 17. Review.

PMID:
28715978
8.

Interspecies differences in PTH-mediated PKA phosphorylation of the epithelial calcium channel TRPV5.

van Goor MK, Verkaart S, van Dam TJ, Huynen MA, van der Wijst J.

Pflugers Arch. 2017 Oct;469(10):1301-1311. doi: 10.1007/s00424-017-1996-9. Epub 2017 May 22.

9.

Epidural pump malfunction.

Shah T, Van Dam T, Madamangalam A.

Anaesthesia. 2017 Feb;72(2):269-270. doi: 10.1111/anae.13797. No abstract available.

10.

Geodetic measurements reveal similarities between post-Last Glacial Maximum and present-day mass loss from the Greenland ice sheet.

Khan SA, Sasgen I, Bevis M, van Dam T, Bamber JL, Wahr J, Willis M, Kjær KH, Wouters B, Helm V, Csatho B, Fleming K, Bjørk AA, Aschwanden A, Knudsen P, Munneke PK.

Sci Adv. 2016 Sep 21;2(9):e1600931. eCollection 2016 Sep.

11.

An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.

Boldt K, van Reeuwijk J, Lu Q, Koutroumpas K, Nguyen TM, Texier Y, van Beersum SE, Horn N, Willer JR, Mans DA, Dougherty G, Lamers IJ, Coene KL, Arts HH, Betts MJ, Beyer T, Bolat E, Gloeckner CJ, Haidari K, Hetterschijt L, Iaconis D, Jenkins D, Klose F, Knapp B, Latour B, Letteboer SJ, Marcelis CL, Mitic D, Morleo M, Oud MM, Riemersma M, Rix S, Terhal PA, Toedt G, van Dam TJ, de Vrieze E, Wissinger Y, Wu KM, Apic G, Beales PL, Blacque OE, Gibson TJ, Huynen MA, Katsanis N, Kremer H, Omran H, van Wijk E, Wolfrum U, Kepes F, Davis EE, Franco B, Giles RH, Ueffing M, Russell RB, Roepman R; UK10K Rare Diseases Group.

Nat Commun. 2016 May 13;7:11491. doi: 10.1038/ncomms11491.

12.

KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome.

Sanders AA, de Vrieze E, Alazami AM, Alzahrani F, Malarkey EB, Sorusch N, Tebbe L, Kuhns S, van Dam TJ, Alhashem A, Tabarki B, Lu Q, Lambacher NJ, Kennedy JE, Bowie RV, Hetterschijt L, van Beersum S, van Reeuwijk J, Boldt K, Kremer H, Kesterson RA, Monies D, Abouelhoda M, Roepman R, Huynen MH, Ueffing M, Russell RB, Wolfrum U, Yoder BK, van Wijk E, Alkuraya FS, Blacque OE.

Genome Biol. 2015 Dec 29;16:293. doi: 10.1186/s13059-015-0858-z.

13.

OFIP/KIAA0753 forms a complex with OFD1 and FOR20 at pericentriolar satellites and centrosomes and is mutated in one individual with oral-facial-digital syndrome.

Chevrier V, Bruel AL, Van Dam TJ, Franco B, Lo Scalzo M, Lembo F, Audebert S, Baudelet E, Isnardon D, Bole A, Borg JP, Kuentz P, Thevenon J, Burglen L, Faivre L, Rivière JB, Huynen MA, Birnbaum D, Rosnet O, Thauvin-Robinet C.

Hum Mol Genet. 2016 Feb 1;25(3):497-513. doi: 10.1093/hmg/ddv488. Epub 2015 Dec 7.

PMID:
26643951
14.

TMEM107 recruits ciliopathy proteins to subdomains of the ciliary transition zone and causes Joubert syndrome.

Lambacher NJ, Bruel AL, van Dam TJ, Szymańska K, Slaats GG, Kuhns S, McManus GJ, Kennedy JE, Gaff K, Wu KM, van der Lee R, Burglen L, Doummar D, Rivière JB, Faivre L, Attié-Bitach T, Saunier S, Curd A, Peckham M, Giles RH, Johnson CA, Huynen MA, Thauvin-Robinet C, Blacque OE.

Nat Cell Biol. 2016 Jan;18(1):122-31. doi: 10.1038/ncb3273. Epub 2015 Nov 23.

15.

An siRNA-based functional genomics screen for the identification of regulators of ciliogenesis and ciliopathy genes.

Wheway G, Schmidts M, Mans DA, Szymanska K, Nguyen TT, Racher H, Phelps IG, Toedt G, Kennedy J, Wunderlich KA, Sorusch N, Abdelhamed ZA, Natarajan S, Herridge W, van Reeuwijk J, Horn N, Boldt K, Parry DA, Letteboer SJF, Roosing S, Adams M, Bell SM, Bond J, Higgins J, Morrison EE, Tomlinson DC, Slaats GG, van Dam TJP, Huang L, Kessler K, Giessl A, Logan CV, Boyle EA, Shendure J, Anazi S, Aldahmesh M, Al Hazzaa S, Hegele RA, Ober C, Frosk P, Mhanni AA, Chodirker BN, Chudley AE, Lamont R, Bernier FP, Beaulieu CL, Gordon P, Pon RT, Donahue C, Barkovich AJ, Wolf L, Toomes C, Thiel CT, Boycott KM, McKibbin M, Inglehearn CF; UK10K Consortium; University of Washington Center for Mendelian Genomics, Stewart F, Omran H, Huynen MA, Sergouniotis PI, Alkuraya FS, Parboosingh JS, Innes AM, Willoughby CE, Giles RH, Webster AR, Ueffing M, Blacque O, Gleeson JG, Wolfrum U, Beales PL, Gibson T, Doherty D, Mitchison HM, Roepman R, Johnson CA.

Nat Cell Biol. 2015 Aug;17(8):1074-1087. doi: 10.1038/ncb3201. Epub 2015 Jul 13.

16.

The SYSCILIA gold standard (SCGSv1) of known ciliary components and its applications within a systems biology consortium.

van Dam TJ, Wheway G, Slaats GG; SYSCILIA Study Group, Huynen MA, Giles RH.

Cilia. 2013 May 31;2(1):7. doi: 10.1186/2046-2530-2-7.

17.

Evolution of modular intraflagellar transport from a coatomer-like progenitor.

van Dam TJ, Townsend MJ, Turk M, Schlessinger A, Sali A, Field MC, Huynen MA.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6943-8. doi: 10.1073/pnas.1221011110. Epub 2013 Apr 8.

18.

Characterization of recombinant human C1 inhibitor secreted in milk of transgenic rabbits.

van Veen HA, Koiter J, Vogelezang CJ, van Wessel N, van Dam T, Velterop I, van Houdt K, Kupers L, Horbach D, Salaheddine M, Nuijens JH, Mannesse ML.

J Biotechnol. 2012 Dec 31;162(2-3):319-26. doi: 10.1016/j.jbiotec.2012.09.005. Epub 2012 Sep 17.

PMID:
22995741
19.

Bedrock displacements in Greenland manifest ice mass variations, climate cycles and climate change.

Bevis M, Wahr J, Khan SA, Madsen FB, Brown A, Willis M, Kendrick E, Knudsen P, Box JE, van Dam T, Caccamise DJ 2nd, Johns B, Nylen T, Abbott R, White S, Miner J, Forsberg R, Zhou H, Wang J, Wilson T, Bromwich D, Francis O.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):11944-8. doi: 10.1073/pnas.1204664109. Epub 2012 Jul 11.

20.

The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase.

Suijkerbuijk SJ, van Dam TJ, Karagöz GE, von Castelmur E, Hubner NC, Duarte AM, Vleugel M, Perrakis A, Rüdiger SG, Snel B, Kops GJ.

Dev Cell. 2012 Jun 12;22(6):1321-9. doi: 10.1016/j.devcel.2012.03.009.

21.

Evolution of the TOR pathway.

van Dam TJ, Zwartkruis FJ, Bos JL, Snel B.

J Mol Evol. 2011 Oct;73(3-4):209-20. doi: 10.1007/s00239-011-9469-9. Epub 2011 Nov 5.

22.

Evolution of the Ras-like small GTPases and their regulators.

van Dam TJ, Bos JL, Snel B.

Small GTPases. 2011 Jan;2(1):4-16.

23.

Characterization of rabbit antithymocyte globulins-induced CD25+ regulatory T cells from cells of patients with end-stage renal disease.

Sewgobind VD, van der Laan LJ, Kho MM, Kraaijeveld R, Korevaar SS, van Dam T, Ijzermans JN, Weimar W, Baan CC.

Transplantation. 2010 Mar 27;89(6):655-66. doi: 10.1097/TP.0b013e3181c9cc7a.

PMID:
20164820
24.

Phylogeny of the CDC25 homology domain reveals rapid differentiation of Ras pathways between early animals and fungi.

van Dam TJ, Rehmann H, Bos JL, Snel B.

Cell Signal. 2009 Nov;21(11):1579-85. doi: 10.1016/j.cellsig.2009.06.004. Epub 2009 Jun 28.

PMID:
19567266
25.

The effect of rabbit anti-thymocyte globulin induction therapy on regulatory T cells in kidney transplant patients.

Sewgobind VD, Kho MM, van der Laan LJ, Hendrikx TK, van Dam T, Tilanus HW, IJzermans JN, Weimar W, Baan CC.

Nephrol Dial Transplant. 2009 May;24(5):1635-44. doi: 10.1093/ndt/gfn778. Epub 2009 Jan 28.

PMID:
19176684
26.

Protein complex evolution does not involve extensive network rewiring.

van Dam TJ, Snel B.

PLoS Comput Biol. 2008 Jul 25;4(7):e1000132. doi: 10.1371/journal.pcbi.1000132.

27.

Simultaneous comparison of 3 derived 12-lead electrocardiograms with standard electrocardiogram at rest and during percutaneous coronary occlusion.

Nelwan SP, Kors JA, Crater SW, Meij SH, van Dam TB, Simoons ML, Krucoff MW.

J Electrocardiol. 2008 May-Jun;41(3):230-7. doi: 10.1016/j.jelectrocard.2008.01.011.

PMID:
18433614
28.

A phase I study of recombinant human C1 inhibitor in asymptomatic patients with hereditary angioedema.

van Doorn MB, Burggraaf J, van Dam T, Eerenberg A, Levi M, Hack CE, Schoemaker RC, Cohen AF, Nuijens J.

J Allergy Clin Immunol. 2005 Oct;116(4):876-83. Epub 2005 Aug 8.

PMID:
16210064
29.

Population pharmacokinetics of cyclosporine in kidney and heart transplant recipients and the influence of ethnicity and genetic polymorphisms in the MDR-1, CYP3A4, and CYP3A5 genes.

Hesselink DA, van Gelder T, van Schaik RH, Balk AH, van der Heiden IP, van Dam T, van der Werf M, Weimar W, Mathot RA.

Clin Pharmacol Ther. 2004 Dec;76(6):545-56.

PMID:
15592326
30.

Assessment of derived 12-lead electrocardiograms using general and patient-specific reconstruction strategies at rest and during transient myocardial ischemia.

Nelwan SP, Crater SW, Green CL, Johanson P, van Dam TB, Meij SH, Simoons ML, Krucoff MW.

Am J Cardiol. 2004 Dec 15;94(12):1529-33.

PMID:
15589009
31.

Simultaneous comparison of three derived 12-lead ECGs with standard ECG at rest and during percutaneous coronary occlusion.

Nelwan SP, Crater SW, Meij SH, van Dam TB, Kors JA, Simoons ML, Krucoff MW.

J Electrocardiol. 2004;37 Suppl:171-2. No abstract available.

PMID:
15534835
32.

The relative importance of cyclosporine exposure in heart, kidney or liver transplant recipients on maintenance therapy.

Hesselink DA, van Dam T, Metselaar HJ, Balk AH, Mathôt RA, Smak Gregoor PJ, Weimar W, van Gelder T.

Transpl Int. 2004 Oct;17(9):495-504. Epub 2004 Aug 28.

33.

Correction of ECG variations caused by body position changes and electrode placement during ST-T monitoring.

Nelwan SP, Meij SH, van Dam TB, Kors JA.

J Electrocardiol. 2001;34 Suppl:213-6.

PMID:
11781959
34.

Cyclosporine is associated with endothelial dysfunction but not with platelet activation in renal transplantation.

Schrama YC, van Dam T, Fijnheer R, Hené RJ, de Groot P, Rabelink TJ.

Neth J Med. 2001 Jul;59(1):6-15.

PMID:
11438194
35.

Nifedipine improves endothelial function in hypercholesterolemia, independently of an effect on blood pressure or plasma lipids.

Verhaar MC, Honing ML, van Dam T, Zwart M, Koomans HA, Kastelein JJ, Rabelink TJ.

Cardiovasc Res. 1999 Jun;42(3):752-60.

PMID:
10533616
36.

5-methyltetrahydrofolate, the active form of folic acid, restores endothelial function in familial hypercholesterolemia.

Verhaar MC, Wever RM, Kastelein JJ, van Dam T, Koomans HA, Rabelink TJ.

Circulation. 1998 Jan 27;97(3):237-41.

PMID:
9462523
37.

Tetrahydrobiopterin regulates superoxide and nitric oxide generation by recombinant endothelial nitric oxide synthase.

Wever RM, van Dam T, van Rijn HJ, de Groot F, Rabelink TJ.

Biochem Biophys Res Commun. 1997 Aug 18;237(2):340-4.

PMID:
9268712
38.

Hereditary tyrosinemia type I: lack of correlation between clinical findings and amount of immunoreactive fumarylacetoacetase protein.

Kvittingen EA, Rootwelt H, van Dam T, van Faassen H, Berger R.

Pediatr Res. 1992 Jan;31(1):43-6.

PMID:
1594329

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