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Items: 1 to 50 of 86

1.

High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

Osman WAM, van Berkum P, León-Barrios M, Velázquez E, Elia P, Tian R, Ardley J, Gollagher M, Seshadri R, Reddy TBK, Ivanova N, Woyke T, Pati A, Markowitz V, Baeshen MN, Baeshen NN, Kyrpides N, Reeve W.

Stand Genomic Sci. 2017 Sep 25;12:58. doi: 10.1186/s40793-017-0270-2. eCollection 2017.

2.

Biogeography of a Novel Ensifer meliloti Clade Associated with the Australian Legume Trigonella suavissima.

Eardly B, Elia P, Brockwell J, Golemboski D, van Berkum P.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e03446-16. doi: 10.1128/AEM.03446-16. Print 2017 May 15.

3.

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

Reeve W, van Berkum P, Ardley J, Tian R, Gollagher M, Marinova D, Elia P, Reddy TBK, Pillay M, Varghese N, Seshadri R, Ivanova N, Woyke T, Baeshen MN, Baeshen NA, Kyrpides N.

Stand Genomic Sci. 2017 Mar 4;12:26. doi: 10.1186/s40793-017-0238-2. eCollection 2017.

4.

High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6.

De Meyer SE, Parker M, Van Berkum P, Tian R, Seshadri R, Reddy TB, Markowitz V, Ivanova N, Pati A, Woyke T, Kyrpides N, Howieson J, Reeve W.

Stand Genomic Sci. 2015 Oct 16;10:80. doi: 10.1186/s40793-015-0074-1. eCollection 2015.

5.

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.

De Meyer SE, Fabiano E, Tian R, Van Berkum P, Seshadri R, Reddy T, Markowitz V, Ivanova N, Pati A, Woyke T, Howieson J, Kyrpides N, Reeve W.

Stand Genomic Sci. 2015 Jun 4;10:31. doi: 10.1186/s40793-015-0018-9. eCollection 2015.

6.

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.

De Meyer SE, Fabiano E, Tian R, Van Berkum P, Seshadri R, Reddy T, Markowitz V, Ivanova NN, Pati A, Woyke T, Howieson J, Kyrpides NC, Reeve W.

Stand Genomic Sci. 2015 Apr 11;10:13. doi: 10.1186/1944-3277-10-13. eCollection 2015.

7.

Stemphylium Leaf Spot of Parsley in California Caused by Stemphylium vesicarium.

Koike ST, O'Neill N, Wolf J, Van Berkum P, Daugovish O.

Plant Dis. 2013 Mar;97(3):315-322. doi: 10.1094/PDIS-06-12-0611-RE.

PMID:
30722397
8.
9.

Evidence of an American origin for symbiosis-related genes in Rhizobium lusitanum.

Valverde A, Velázquez E, Cervantes E, Igual JM, van Berkum P.

Appl Environ Microbiol. 2011 Aug 15;77(16):5665-70. doi: 10.1128/AEM.02017-10. Epub 2011 Jun 24.

10.

Evidence that the exoH gene of Sinorhizobium meliloti does not appear to influence symbiotic effectiveness with Medicago truncatula 'Jemalong A17'.

Zribi K, Mhadhbi H, Badri Y, Aouani ME, van Berkum P.

Can J Microbiol. 2010 Dec;56(12):996-1002. doi: 10.1139/W10-086.

PMID:
21164569
11.

Application of multilocus sequence typing to study the genetic structure of megaplasmids in medicago-nodulating rhizobia.

van Berkum P, Elia P, Eardly BD.

Appl Environ Microbiol. 2010 Jun;76(12):3967-77. doi: 10.1128/AEM.00251-10. Epub 2010 Apr 23.

12.

Ensifer, Phyllobacterium and Rhizobium species occupy nodules of Medicago sativa (alfalfa) and Melilotus alba (sweet clover) grown at a Canadian site without a history of cultivation.

Bromfield ES, Tambong JT, Cloutier S, Prévost D, Laguerre G, van Berkum P, Thi TV, Assabgui R, Barran LR.

Microbiology. 2010 Feb;156(Pt 2):505-20. doi: 10.1099/mic.0.034058-0. Epub 2009 Oct 29.

PMID:
19875436
13.

Rhizobia from Lanzarote, the Canary Islands, that nodulate Phaseolus vulgaris have characteristics in common with Sinorhizobium meliloti isolates from mainland Spain.

Zurdo-Piñeiro JL, García-Fraile P, Rivas R, Peix A, León-Barrios M, Willems A, Mateos PF, Martínez-Molina E, Velázquez E, van Berkum P.

Appl Environ Microbiol. 2009 Apr;75(8):2354-9. doi: 10.1128/AEM.02811-08. Epub 2009 Feb 13.

14.
15.

Stable low molecular weight RNA profiling showed variations within Sinorhizobium meliloti and Sinorhizobium medicae nodulating different legumes from the alfalfa cross-inoculation group.

Del Villar M, Rivas R, Peix A, Mateos PF, Martínez-Molina E, van Berkum P, Willems A, Velázquez E.

FEMS Microbiol Lett. 2008 May;282(2):273-81. doi: 10.1111/j.1574-6968.2008.01139.x. Epub 2008 Apr 9.

16.

Chromate-tolerant bacteria for enhanced metal uptake by Eichhornia crassipes (Mart.).

Abou-Shanab RA, Angle JS, van Berkum P.

Int J Phytoremediation. 2007 Mar-Apr;9(2):91-105. doi: 10.1080/15226510701232708.

PMID:
18246718
17.

Chromosomal and symbiotic relationships of rhizobia nodulating Medicago truncatula and M. laciniata.

van Berkum P, Badri Y, Elia P, Aouani ME, Eardly BD.

Appl Environ Microbiol. 2007 Dec;73(23):7597-604. Epub 2007 Oct 5.

18.

The genetic diversity of rhizobia associated with Dalea purpurea Vent. in fragmented grasslands of west-central Minnesota.

Mártir MC, Tlusty B, van Berkum P, Graham PH.

Can J Microbiol. 2007 Mar;53(3):351-63.

PMID:
17538644
19.

Comparison of rhizobia that nodulate Medicago laciniata and Medicago truncatula present in a single Tunisian arid soil.

Badri Y, Zribi K, Badri M, Huguet T, van Berkum P, Aouani ME.

Can J Microbiol. 2007 Feb;53(2):277-83.

PMID:
17496977
21.
22.
24.

Characteristics of the rhizobia associated with Dalea spp. in the Ordway, Kellogg-Weaver Dunes, and Hayden prairies.

Tlusty B, van Berkum P, Graham PH.

Can J Microbiol. 2005 Jan;51(1):15-23.

PMID:
15782230
25.

Rhizobial 16S rRNA and dnaK genes: mosaicism and the uncertain phylogenetic placement of Rhizobium galegae.

Eardly BD, Nour SM, van Berkum P, Selander RK.

Appl Environ Microbiol. 2005 Mar;71(3):1328-35.

26.

Characteristics of rhizobia nodulating beans in the central region of Minnesota.

Bernal GR, Tlusty B, Estevez de Jensen C, van Berkum P, Graham PH.

Can J Microbiol. 2004 Dec;50(12):1023-31.

PMID:
15714233
27.

Ethiopian soils harbor natural populations of rhizobia that form symbioses with common bean ( Phaseolus vulgaris L.).

Beyene D, Kassa S, Ampy F, Asseffa A, Gebremedhin T, van Berkum P.

Arch Microbiol. 2004 Feb;181(2):129-36. Epub 2003 Dec 18.

PMID:
14685648
28.

Agrobacterium is a definable genus of the family Rhizobiaceae.

Farrand SK, Van Berkum PB, Oger P.

Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1681-7.

PMID:
13130068
29.

Discordant phylogenies within the rrn loci of Rhizobia.

van Berkum P, Terefework Z, Paulin L, Suomalainen S, Lindström K, Eardly BD.

J Bacteriol. 2003 May;185(10):2988-98.

30.

Mycobacterium shottsii sp. nov., a slowly growing species isolated from Chesapeake Bay striped bass (Morone saxatilis).

Rhodes MW, Kator H, Kotob S, van Berkum P, Kaattari I, Vogelbein W, Quinn F, Floyd MM, Butler WR, Ottinger CA.

Int J Syst Evol Microbiol. 2003 Mar;53(Pt 2):421-4.

PMID:
12710607
31.

A cytochrome P450 gene cluster in the Rhizobiaceae.

Keister DL, Tully RE, Van Berkum P.

J Gen Appl Microbiol. 1999 Dec;45(6):301-303. No abstract available.

32.

Mesorhizobium amorphae, a rhizobial species that nodulates Amorpha fruticosa, is native to American soils.

Wang ET, Rogel MA, Sui XH, Chen WX, Martínez-Romero E, van Berkum P.

Arch Microbiol. 2002 Oct;178(4):301-5. Epub 2002 Jun 29.

PMID:
12209264
33.

Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium.

Parker MA, Lafay B, Burdon JJ, van Berkum P.

Microbiology. 2002 Aug;148(Pt 8):2557-65.

PMID:
12177349
34.

Phylogeny of Stemphylium spp. based on ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences.

Câmara MP, O'Neill NR, van Berkum P.

Mycologia. 2002 Jul-Aug;94(4):660-72.

PMID:
21156539
35.

Molecular phylogeny of Leptosphaeria and Phaeosphaeria.

Câmara MP, Palm ME, van Berkum P, O'Neill NR.

Mycologia. 2002 Jul-Aug;94(4):630-40.

PMID:
21156536
36.

Influence of biosolids compost on the bradyrhizobial genotypes recovered from cowpea and soybean nodules.

Cousin C, Grant J, Dixon F, Beyene D, van Berkum P.

Arch Microbiol. 2002 May;177(5):427-30. Epub 2002 Feb 28.

PMID:
11976752
37.
38.

A unique Mycobacterium species isolated from an epizootic of striped bass (Morone saxatilis).

Rhodes MW, Kator H, Kotob S, van Berkum P, Kaattari I, Vogelbein W, Floyd MM, Butler WR, Quinn FD, Ottinger C, Shotts E.

Emerg Infect Dis. 2001 Sep-Oct;7(5):896-9.

39.

Characterization of soybean bradyrhizobia for which serogroup affinities have not been identified.

van Berkum P, Fuhrmann JJ.

Can J Microbiol. 2001 Jun;47(6):519-25.

PMID:
11467727
40.

The putative glutamate receptors from plants are related to two superfamilies of animal neurotransmitter receptors via distinct evolutionary mechanisms.

Turano FJ, Panta GR, Allard MW, van Berkum P.

Mol Biol Evol. 2001 Jul;18(7):1417-20. No abstract available.

PMID:
11420380
41.

Characterization of rhizobial isolates of Phaseolus vulgaris by staircase electrophoresis of low-molecular-weight RNA.

Velázquez E, Martínez-Romero E, Rodríguez-Navarro DN, Trujillo ME, Daza A, Mateos PF, Martínez-Molina E, van Berkum P.

Appl Environ Microbiol. 2001 Feb;67(2):1008-10.

42.
43.

Variability in plant-microbe interaction between Lupinus lines and Bradyrhizobium strains.

Robinson KO, Beyene DA, van Berkum P, Knight-Mason R, Bhardwaj HL.

Plant Sci. 2000 Nov 6;159(2):257-264.

PMID:
11074278
45.

Characterization of two Perkinsus spp. from the softshell clam, Mya arenaria using the small subunit ribosomal RNA gene.

Kotob SI, McLaughlin SM, van Berkum P, Faisal M.

J Eukaryot Microbiol. 1999 Jul-Aug;46(4):439-44.

PMID:
10461386
46.

Diversity of rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov.

Wang ET, van Berkum P, Sui XH, Beyene D, Chen WX, Martínez-Romero E.

Int J Syst Bacteriol. 1999 Jan;49 Pt 1:51-65.

PMID:
10028247
47.

Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae.

Wang ET, van Berkum P, Beyene D, Sui XH, Dorado O, Chen WX, Martínez-Romero E.

Int J Syst Bacteriol. 1998 Jul;48 Pt 3:687-99.

PMID:
9734023
48.

Identification and sequencing of a cytochrome P450 gene cluster from Bradyrhizobium japonicum.

Tully RE, van Berkum P, Lovins KW, Keister DL.

Biochim Biophys Acta. 1998 Jul 9;1398(3):243-55.

PMID:
9655913
49.
50.

Genetic diversity of rhizobial symbionts isolated from legume species within the genera Astragalus, Oxytropis, and Onobrychis.

Laguerre G, van Berkum P, Amarger N, Prévost D.

Appl Environ Microbiol. 1997 Dec;63(12):4748-58.

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