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Items: 15

1.

High-throughput identification of human SNPs affecting regulatory element activity.

van Arensbergen J, Pagie L, FitzPatrick VD, de Haas M, Baltissen MP, Comoglio F, van der Weide RH, Teunissen H, Võsa U, Franke L, de Wit E, Vermeulen M, Bussemaker HJ, van Steensel B.

Nat Genet. 2019 Jul;51(7):1160-1169. doi: 10.1038/s41588-019-0455-2. Epub 2019 Jun 28.

2.

Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs.

Leemans C, van der Zwalm MCH, Brueckner L, Comoglio F, van Schaik T, Pagie L, van Arensbergen J, van Steensel B.

Cell. 2019 May 2;177(4):852-864.e14. doi: 10.1016/j.cell.2019.03.009. Epub 2019 Apr 11.

3.

Functional Enhancer Screening in Single Cells.

van Arensbergen J, van Steensel B.

Mol Cell. 2017 Apr 20;66(2):167-168. doi: 10.1016/j.molcel.2017.03.018.

4.

Clustering of Drosophila housekeeping promoters facilitates their expression.

Corrales M, Rosado A, Cortini R, van Arensbergen J, van Steensel B, Filion GJ.

Genome Res. 2017 Jul;27(7):1153-1161. doi: 10.1101/gr.211433.116. Epub 2017 Apr 18.

5.

A distal intergenic region controls pancreatic endocrine differentiation by acting as a transcriptional enhancer and as a polycomb response element.

van Arensbergen J, Dussaud S, Pardanaud-Glavieux C, García-Hurtado J, Sauty C, Guerci A, Ferrer J, Ravassard P.

PLoS One. 2017 Feb 22;12(2):e0171508. doi: 10.1371/journal.pone.0171508. eCollection 2017.

6.

Genome-wide mapping of autonomous promoter activity in human cells.

van Arensbergen J, FitzPatrick VD, de Haas M, Pagie L, Sluimer J, Bussemaker HJ, van Steensel B.

Nat Biotechnol. 2017 Feb;35(2):145-153. doi: 10.1038/nbt.3754. Epub 2016 Dec 26.

7.

High-throughput assessment of context-dependent effects of chromatin proteins.

Brueckner L, van Arensbergen J, Akhtar W, Pagie L, van Steensel B.

Epigenetics Chromatin. 2016 Oct 18;9:43. eCollection 2016.

8.

Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.

Pindyurin AV, Pagie L, Kozhevnikova EN, van Arensbergen J, van Steensel B.

Nucleic Acids Res. 2016 Jul 8;44(12):5646-57. doi: 10.1093/nar/gkw176. Epub 2016 Mar 21.

9.

In search of the determinants of enhancer-promoter interaction specificity.

van Arensbergen J, van Steensel B, Bussemaker HJ.

Trends Cell Biol. 2014 Nov;24(11):695-702. doi: 10.1016/j.tcb.2014.07.004. Epub 2014 Aug 24. Review.

10.

Selection Based on FOXA2 Expression Is Not Sufficient to Enrich for Dopamine Neurons From Human Pluripotent Stem Cells.

Aguila JC, Blak A, van Arensbergen J, Sousa A, Vázquez N, Aduriz A, Gayosso M, Lopez Mato MP, Lopez de Maturana R, Hedlund E, Sonntag KC, Sanchez-Pernaute R.

Stem Cells Transl Med. 2014 Sep;3(9):1032-42. doi: 10.5966/sctm.2014-0011. Epub 2014 Jul 14.

11.

Ring1b bookmarks genes in pancreatic embryonic progenitors for repression in adult β cells.

van Arensbergen J, García-Hurtado J, Maestro MA, Correa-Tapia M, Rutter GA, Vidal M, Ferrer J.

Genes Dev. 2013 Jan 1;27(1):52-63. doi: 10.1101/gad.206094.112. Epub 2012 Dec 27.

12.

Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes.

Morán I, Akerman I, van de Bunt M, Xie R, Benazra M, Nammo T, Arnes L, Nakić N, García-Hurtado J, Rodríguez-Seguí S, Pasquali L, Sauty-Colace C, Beucher A, Scharfmann R, van Arensbergen J, Johnson PR, Berry A, Lee C, Harkins T, Gmyr V, Pattou F, Kerr-Conte J, Piemonti L, Berney T, Hanley N, Gloyn AL, Sussel L, Langman L, Brayman KL, Sander M, McCarthy MI, Ravassard P, Ferrer J.

Cell Metab. 2012 Oct 3;16(4):435-48. doi: 10.1016/j.cmet.2012.08.010.

13.

Removing the brakes on cell identity.

Akerman I, van Arensbergen J, Ferrer J.

Dev Cell. 2011 Apr 19;20(4):411-2. doi: 10.1016/j.devcel.2011.04.002.

14.

Derepression of Polycomb targets during pancreatic organogenesis allows insulin-producing beta-cells to adopt a neural gene activity program.

van Arensbergen J, García-Hurtado J, Moran I, Maestro MA, Xu X, Van de Casteele M, Skoudy AL, Palassini M, Heimberg H, Ferrer J.

Genome Res. 2010 Jun;20(6):722-32. doi: 10.1101/gr.101709.109. Epub 2010 Apr 15.

15.

Enhanced yield of neuroepithelial precursors and midbrain-like dopaminergic neurons from human embryonic stem cells using the bone morphogenic protein antagonist noggin.

Sonntag KC, Pruszak J, Yoshizaki T, van Arensbergen J, Sanchez-Pernaute R, Isacson O.

Stem Cells. 2007 Feb;25(2):411-8. Epub 2006 Oct 12.

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