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Items: 46

1.

Interactions of anaerobic ammonium oxidizers and sulfide-oxidizing bacteria in a substrate-limited model system mimicking the marine environment.

Russ L, van Alen TA, Jetten MSM, Op den Camp HJM, Kartal B.

FEMS Microbiol Ecol. 2019 Sep 1;95(9). pii: fiz137. doi: 10.1093/femsec/fiz137.

PMID:
31494679
2.

Complete Genome Sequence of the Aerobic Facultative Methanotroph Methylocella tundrae Strain T4.

Kox MAR, Farhan Ul Haque M, van Alen TA, Crombie AT, Jetten MSM, Op den Camp HJM, Dedysh SN, van Kessel MAHJ, Murrell JC.

Microbiol Resour Announc. 2019 May 16;8(20). pii: e00286-19. doi: 10.1128/MRA.00286-19.

3.

Publisher Correction: Nitric oxide-dependent anaerobic ammonium oxidation.

Hu Z, Wessels HJCT, van Alen T, Jetten MSM, Kartal B.

Nat Commun. 2019 Apr 18;10(1):1910. doi: 10.1038/s41467-019-09797-4.

4.

Nitric oxide-dependent anaerobic ammonium oxidation.

Hu Z, Wessels HJCT, van Alen T, Jetten MSM, Kartal B.

Nat Commun. 2019 Mar 20;10(1):1244. doi: 10.1038/s41467-019-09268-w. Erratum in: Nat Commun. 2019 Apr 18;10(1):1910.

5.

Response of the Anaerobic Methanotroph "Candidatus Methanoperedens nitroreducens" to Oxygen Stress.

Guerrero-Cruz S, Cremers G, van Alen TA, Op den Camp HJM, Jetten MSM, Rasigraf O, Vaksmaa A.

Appl Environ Microbiol. 2018 Nov 30;84(24). pii: e01832-18. doi: 10.1128/AEM.01832-18. Print 2018 Dec 15.

6.

Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila.

Versantvoort W, Guerrero-Cruz S, Speth DR, Frank J, Gambelli L, Cremers G, van Alen T, Jetten MSM, Kartal B, Op den Camp HJM, Reimann J.

Front Microbiol. 2018 Jul 24;9:1672. doi: 10.3389/fmicb.2018.01672. eCollection 2018.

7.

Bioreactor virome metagenomics sequencing using DNA spike-ins.

Cremers G, Gambelli L, van Alen T, van Niftrik L, Op den Camp HJM.

PeerJ. 2018 Feb 7;6:e4351. doi: 10.7717/peerj.4351. eCollection 2018.

8.

Stratification of Diversity and Activity of Methanogenic and Methanotrophic Microorganisms in a Nitrogen-Fertilized Italian Paddy Soil.

Vaksmaa A, van Alen TA, Ettwig KF, Lupotto E, Valè G, Jetten MSM, Lüke C.

Front Microbiol. 2017 Nov 13;8:2127. doi: 10.3389/fmicb.2017.02127. eCollection 2017.

9.

Ammonia Oxidation and Nitrite Reduction in the Verrucomicrobial Methanotroph Methylacidiphilum fumariolicum SolV.

Mohammadi SS, Pol A, van Alen T, Jetten MSM, Op den Camp HJM.

Front Microbiol. 2017 Sep 27;8:1901. doi: 10.3389/fmicb.2017.01901. eCollection 2017.

10.

Enrichment of anaerobic nitrate-dependent methanotrophic 'Candidatus Methanoperedens nitroreducens' archaea from an Italian paddy field soil.

Vaksmaa A, Guerrero-Cruz S, van Alen TA, Cremers G, Ettwig KF, Lüke C, Jetten MSM.

Appl Microbiol Biotechnol. 2017 Sep;101(18):7075-7084. doi: 10.1007/s00253-017-8416-0. Epub 2017 Aug 4.

11.

A parts list for fungal cellulosomes revealed by comparative genomics.

Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, Hainaut M, Boxma B, van Alen T, Hackstein JHP, Henrissat B, Baker SE, Grigoriev IV, O'Malley MA.

Nat Microbiol. 2017 May 30;2:17087. doi: 10.1038/nmicrobiol.2017.87.

PMID:
28555641
12.

Methylacidiphilum fumariolicum SolV, a thermoacidophilic 'Knallgas' methanotroph with both an oxygen-sensitive and -insensitive hydrogenase.

Mohammadi S, Pol A, van Alen TA, Jetten MS, Op den Camp HJ.

ISME J. 2017 Apr;11(4):945-958. doi: 10.1038/ismej.2016.171. Epub 2016 Dec 9.

13.

Distribution and activity of the anaerobic methanotrophic community in a nitrogen-fertilized Italian paddy soil.

Vaksmaa A, Lüke C, van Alen T, Valè G, Lupotto E, Jetten MS, Ettwig KF.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw181. Epub 2016 Aug 24.

PMID:
27562776
14.

Phylogenetic relationships within the Phyllidiidae (Opisthobranchia, Nudibranchia).

Stoffels BE, van der Meij SE, Hoeksema BW, van Alphen J, van Alen T, Meyers-Muñoz MA, de Voogd NJ, Tuti Y, van der Velde G.

Zookeys. 2016 Jul 14;(605):1-35. doi: 10.3897/zookeys.605.7136. eCollection 2016.

15.

The phylogenetic position of a new species of Plakobranchus from West Papua, Indonesia (Mollusca, Opisthobranchia, Sacoglossa).

Meyers-Muñoz MA, van der Velde G, van der Meij SE, Stoffels BE, van Alen T, Tuti Y, Hoeksema BW.

Zookeys. 2016 May 30;(594):73-98. doi: 10.3897/zookeys.594.5954. eCollection 2016.

16.

The symbiotic intestinal ciliates and the evolution of their hosts.

Moon-van der Staay SY, van der Staay GW, Michalowski T, Jouany JP, Pristas P, Javorský P, Kišidayová S, Varadyova Z, McEwan NR, Newbold CJ, van Alen T, de Graaf R, Schmid M, Huynen MA, Hackstein JH.

Eur J Protistol. 2014 Apr;50(2):166-73. doi: 10.1016/j.ejop.2014.01.004. Epub 2014 Jan 31.

PMID:
24703617
17.

Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone.

Villanueva L, Speth DR, van Alen T, Hoischen A, Jetten MS.

Front Microbiol. 2014 Feb 5;5:31. doi: 10.3389/fmicb.2014.00031. eCollection 2014.

18.

Lysozyme and penicillin inhibit the growth of anaerobic ammonium-oxidizing planctomycetes.

Hu Z, van Alen T, Jetten MS, Kartal B.

Appl Environ Microbiol. 2013 Dec;79(24):7763-9. doi: 10.1128/AEM.02467-13. Epub 2013 Oct 4.

19.

Co-localization of particulate methane monooxygenase and cd1 nitrite reductase in the denitrifying methanotroph 'Candidatus Methylomirabilis oxyfera'.

Wu ML, van Alen TA, van Donselaar EG, Strous M, Jetten MS, van Niftrik L.

FEMS Microbiol Lett. 2012 Sep;334(1):49-56. doi: 10.1111/j.1574-6968.2012.02615.x.

20.

Enrichment of denitrifying methanotrophic bacteria for application after direct low-temperature anaerobic sewage treatment.

Kampman C, Hendrickx TL, Luesken FA, van Alen TA, Op den Camp HJ, Jetten MS, Zeeman G, Buisman CJ, Temmink H.

J Hazard Mater. 2012 Aug 15;227-228:164-71. doi: 10.1016/j.jhazmat.2012.05.032. Epub 2012 May 15.

PMID:
22657102
21.

Hydrazine synthase, a unique phylomarker with which to study the presence and biodiversity of anammox bacteria.

Harhangi HR, Le Roy M, van Alen T, Hu BL, Groen J, Kartal B, Tringe SG, Quan ZX, Jetten MS, Op den Camp HJ.

Appl Environ Microbiol. 2012 Feb;78(3):752-8. doi: 10.1128/AEM.07113-11. Epub 2011 Dec 2.

22.

Combined anaerobic ammonium and methane oxidation for nitrogen and methane removal.

Zhu B, Sánchez J, van Alen TA, Sanabria J, Jetten MS, Ettwig KF, Kartal B.

Biochem Soc Trans. 2011 Dec;39(6):1822-5. doi: 10.1042/BST20110704. Review.

PMID:
22103533
23.

Simultaneous nitrite-dependent anaerobic methane and ammonium oxidation processes.

Luesken FA, Sánchez J, van Alen TA, Sanabria J, Op den Camp HJ, Jetten MS, Kartal B.

Appl Environ Microbiol. 2011 Oct;77(19):6802-7. doi: 10.1128/AEM.05539-11. Epub 2011 Aug 12.

24.

Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge.

Luesken FA, van Alen TA, van der Biezen E, Frijters C, Toonen G, Kampman C, Hendrickx TL, Zeeman G, Temmink H, Strous M, Op den Camp HJ, Jetten MS.

Appl Microbiol Biotechnol. 2011 Nov;92(4):845-54. doi: 10.1007/s00253-011-3361-9. Epub 2011 Jun 11.

25.

pmoA Primers for detection of anaerobic methanotrophs.

Luesken FA, Zhu B, van Alen TA, Butler MK, Diaz MR, Song B, Op den Camp HJ, Jetten MS, Ettwig KF.

Appl Environ Microbiol. 2011 Jun;77(11):3877-80. doi: 10.1128/AEM.02960-10. Epub 2011 Apr 1.

26.

The organellar genome and metabolic potential of the hydrogen-producing mitochondrion of Nyctotherus ovalis.

de Graaf RM, Ricard G, van Alen TA, Duarte I, Dutilh BE, Burgtorf C, Kuiper JW, van der Staay GW, Tielens AG, Huynen MA, Hackstein JH.

Mol Biol Evol. 2011 Aug;28(8):2379-91. doi: 10.1093/molbev/msr059. Epub 2011 Mar 4.

27.

Comparative proteomic analysis of biofilm and planktonic cells of Neisseria meningitidis.

van Alen T, Claus H, Zahedi RP, Groh J, Blazyca H, Lappann M, Sickmann A, Vogel U.

Proteomics. 2010 Dec;10(24):4512-21. doi: 10.1002/pmic.201000267. Epub 2010 Nov 17.

PMID:
21136603
28.

Physiological role of the respiratory quinol oxidase in the anaerobic nitrite-reducing methanotroph 'Candidatus Methylomirabilis oxyfera'.

Wu ML, de Vries S, van Alen TA, Butler MK, Op den Camp HJM, Keltjens JT, Jetten MSM, Strous M.

Microbiology. 2011 Mar;157(Pt 3):890-898. doi: 10.1099/mic.0.045187-0. Epub 2010 Nov 11.

PMID:
21071492
29.

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.

Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJ, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJ, Janssen-Megens EM, Francoijs KJ, Stunnenberg H, Weissenbach J, Jetten MS, Strous M.

Nature. 2010 Mar 25;464(7288):543-8. doi: 10.1038/nature08883.

PMID:
20336137
30.

A dual role of extracellular DNA during biofilm formation of Neisseria meningitidis.

Lappann M, Claus H, van Alen T, Harmsen M, Elias J, Molin S, Vogel U.

Mol Microbiol. 2010 Mar;75(6):1355-71. doi: 10.1111/j.1365-2958.2010.07054.x. Epub 2010 Feb 17.

31.

Modulation of transcription and characterization of the promoter organization of the autotransporter adhesin heptosyltransferase and the autotransporter adhesin AIDA-I.

Benz I, van Alen T, Bolte J, Wörmann ME, Schmidt MA.

Microbiology. 2010 Apr;156(Pt 4):1155-1166. doi: 10.1099/mic.0.032292-0. Epub 2010 Jan 7.

PMID:
20056708
32.

The hydrogenosomes of Psalteriomonas lanterna.

de Graaf RM, Duarte I, van Alen TA, Kuiper JW, Schotanus K, Rosenberg J, Huynen MA, Hackstein JH.

BMC Evol Biol. 2009 Dec 9;9:287. doi: 10.1186/1471-2148-9-287.

33.

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus.

de Graaf RM, van Alen TA, Dutilh BE, Kuiper JW, van Zoggel HJ, Huynh MB, Görtz HD, Huynen MA, Hackstein JH.

BMC Genomics. 2009 Nov 6;10:514. doi: 10.1186/1471-2164-10-514.

34.

Enrichment and molecular detection of denitrifying methanotrophic bacteria of the NC10 phylum.

Ettwig KF, van Alen T, van de Pas-Schoonen KT, Jetten MS, Strous M.

Appl Environ Microbiol. 2009 Jun;75(11):3656-62. doi: 10.1128/AEM.00067-09. Epub 2009 Mar 27.

35.

Macronuclear genome structure of the ciliate Nyctotherus ovalis: single-gene chromosomes and tiny introns.

Ricard G, de Graaf RM, Dutilh BE, Duarte I, van Alen TA, van Hoek AH, Boxma B, van der Staay GW, Moon-van der Staay SY, Chang WJ, Landweber LF, Hackstein JH, Huynen MA.

BMC Genomics. 2008 Dec 5;9:587. doi: 10.1186/1471-2164-9-587.

36.

The [FeFe] hydrogenase of Nyctotherus ovalis has a chimeric origin.

Boxma B, Ricard G, van Hoek AH, Severing E, Moon-van der Staay SY, van der Staay GW, van Alen TA, de Graaf RM, Cremers G, Kwantes M, McEwan NR, Newbold CJ, Jouany JP, Michalowski T, Pristas P, Huynen MA, Hackstein JH.

BMC Evol Biol. 2007 Nov 16;7:230.

37.

Hydrogenosomes: convergent adaptations of mitochondria to anaerobic environments.

Hackstein JH, Akhmanova A, Voncken F, van Hoek A, van Alen T, Boxma B, Moon-van der Staay SY, van der Staay G, Leunissen J, Huynen M, Rosenberg J, Veenhuis M.

Zoology (Jena). 2001;104(3-4):290-302.

PMID:
16351844
38.

An anaerobic mitochondrion that produces hydrogen.

Boxma B, de Graaf RM, van der Staay GW, van Alen TA, Ricard G, Gabaldón T, van Hoek AH, Moon-van der Staay SY, Koopman WJ, van Hellemond JJ, Tielens AG, Friedrich T, Veenhuis M, Huynen MA, Hackstein JH.

Nature. 2005 Mar 3;434(7029):74-9.

PMID:
15744302
39.

The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an alcohol dehydrogenase E.

Boxma B, Voncken F, Jannink S, van Alen T, Akhmanova A, van Weelden SW, van Hellemond JJ, Ricard G, Huynen M, Tielens AG, Hackstein JH.

Mol Microbiol. 2004 Mar;51(5):1389-99.

40.

Cross-epithelial hydrogen transfer from the midgut compartment drives methanogenesis in the hindgut of cockroaches.

Lemke T, van Alen T, Hackstein JH, Brune A.

Appl Environ Microbiol. 2001 Oct;67(10):4657-61.

41.

Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates.

van Hoek AH, van Alen TA, Sprakel VS, Leunissen JA, Brigge T, Vogels GD, Hackstein JH.

Mol Biol Evol. 2000 Feb;17(2):251-8.

PMID:
10677847
42.

Voltage-dependent reversal of anodic galvanotaxis in Nyctotherus ovalis.

Van Hoek AH, Sprakel VS, Van Alen TA, Theuvenet AP, Vogels GD, Hackstein JH.

J Eukaryot Microbiol. 1999 Jul-Aug;46(4):427-33.

PMID:
10461384
43.

A hydrogenosome with a genome.

Akhmanova A, Voncken F, van Alen T, van Hoek A, Boxma B, Vogels G, Veenhuis M, Hackstein JH.

Nature. 1998 Dec 10;396(6711):527-8. No abstract available.

PMID:
9859986
44.

Evolution of anaerobic ciliates from the gastrointestinal tract: phylogenetic analysis of the ribosomal repeat from Nyctotherus ovalis and its relatives.

van Hoek AH, van Alen TA, Sprakel VS, Hackstein JH, Vogels GD.

Mol Biol Evol. 1998 Sep;15(9):1195-206.

PMID:
9729884
45.

FECAL METHANOGENS AND VERTEBRATE EVOLUTION.

Hackstein JHP, van Alen TA.

Evolution. 1996 Apr;50(2):559-572. doi: 10.1111/j.1558-5646.1996.tb03868.x.

PMID:
28568959
46.

Intestinal methanogenesis in primates--a genetic and evolutionary approach.

Hackstein JH, Van Alen TA, Op Den Camp H, Smits A, Mariman E.

Dtsch Tierarztl Wochenschr. 1995 Apr;102(4):152-4.

PMID:
7555692

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