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Bronchial hyperresponsiveness in children with allergic rhinitis and the associated risk factors.

Karaatmaca B, Gur Cetinkaya P, Esenboga S, Ozer M, Soyer O, Karabulut E, Sekerel BE, Sahiner UM.

Allergy. 2019 Feb 25. doi: 10.1111/all.13755. [Epub ahead of print] No abstract available.


Gastroesophageal Reflux in Asymptomatic Patients with Diabetes: An Impedance Study Diabetes, Obesity and Gastroesophageal Reflux.

Gokturk S, Akyuz F, Arici S, Alpaslan B, Ormeci A, Soyer OM, Evirgen S, Cavus B, Uzum AK, Gul N, Akyuz U, Karaca C, Demir K, Kaymakoglu S, Satman I, Besisik F.

Exp Clin Endocrinol Diabetes. 2018 Nov 20. doi: 10.1055/a-0783-2327. [Epub ahead of print]


Manganese Oxide Biomineralization Provides Protection against Nitrite Toxicity in a Cell-Density-Dependent Manner.

Zerfaß C, Christie-Oleza JA, Soyer OS.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e02129-18. doi: 10.1128/AEM.02129-18. Print 2019 Jan 15.


Biodiversity-function relationships in methanogenic communities.

Sierocinski P, Bayer F, Yvon-Durocher G, Burdon M, Großkopf T, Alston M, Swarbreck D, Hobbs PJ, Soyer OS, Buckling A.

Mol Ecol. 2018 Nov;27(22):4641-4651. doi: 10.1111/mec.14895. Epub 2018 Nov 22.


Integrated human-virus metabolic stoichiometric modelling predicts host-based antiviral targets against Chikungunya, Dengue and Zika viruses.

Aller S, Scott A, Sarkar-Tyson M, Soyer OS.

J R Soc Interface. 2018 Sep 12;15(146). pii: 20180125. doi: 10.1098/rsif.2018.0125.


A new Luminex-based peptide assay to identify reactivity to baked, fermented, and whole milk.

Sackesen C, Suárez-Fariñas M, Silva R, Lin J, Schmidt S, Getts R, Gimenez G, Yilmaz EA, Cavkaytar O, Buyuktiryaki B, Soyer O, Grishina G, Sampson HA.

Allergy. 2019 Feb;74(2):327-336. doi: 10.1111/all.13581. Epub 2018 Oct 11.


A Rare Case of Pediatric Bullous Spontaneous Acute Urticaria.

Gür Çetinkaya P, Şekerel BE, Soyer ÖU, Şahiner ÜM.

Med Princ Pract. 2018;27(5):493-495. doi: 10.1159/000491586. Epub 2018 Jun 28.


Factors Affecting Food Allergy-Related Quality of Life From Parents' Perception in Turkish Children.

Arik Yilmaz E, Cavkaytar O, Buyuktiryaki B, Soyer O, Sahiner UM, Sekerel BE, DunnGalvin A, Karabulut E, Sackesen C.

Allergy Asthma Immunol Res. 2018 Jul;10(4):379-386. doi: 10.4168/aair.2018.10.4.379.


MetQy-an R package to query metabolic functions of genes and genomes.

Martinez-Vernon AS, Farrell F, Soyer OS.

Bioinformatics. 2018 Dec 1;34(23):4134-4137. doi: 10.1093/bioinformatics/bty447.


EAACI/ENDA Position Paper: Diagnosis and management of hypersensitivity reactions to non-steroidal anti-inflammatory drugs (NSAIDs) in children and adolescents.

Kidon M, Blanca-Lopez N, Gomes E, Terreehorst I, Tanno L, Ponvert C, Chin CW, Caubet JC, Soyer O, Mori F, Blanca M, Atanaskovic-Markovic M.

Pediatr Allergy Immunol. 2018 Aug;29(5):469-480. doi: 10.1111/pai.12915. Epub 2018 Jun 13.


Impact of spatial organization on a novel auxotrophic interaction among soil microbes.

Jiang X, Zerfaß C, Feng S, Eichmann R, Asally M, Schäfer P, Soyer OS.

ISME J. 2018 Jun;12(6):1443-1456. doi: 10.1038/s41396-018-0095-z. Epub 2018 Mar 23.


Current state and clinical outcome in Turkish patients with hepatocellular carcinoma.

Ekinci O, Baran B, Ormeci AC, Soyer OM, Gokturk S, Evirgen S, Poyanli A, Gulluoglu M, Akyuz F, Karaca C, Demir K, Besisik F, Kaymakoglu S.

World J Hepatol. 2018 Jan 27;10(1):51-61. doi: 10.4254/wjh.v10.i1.51.


Repeated doses of salbutamol and aeroallergen sensitisation both increased salbutamol-induced hypoxia in children and adolescents with acute asthma.

Ozer M, Buyuktiryaki B, Sahiner UM, Teksam O, Karaatmaca B, Soyer O, Sekerel BE.

Acta Paediatr. 2018 Apr;107(4):647-652. doi: 10.1111/apa.14202. Epub 2018 Jan 17.


Engineering microbial communities using thermodynamic principles and electrical interfaces.

Zerfaß C, Chen J, Soyer OS.

Curr Opin Biotechnol. 2018 Apr;50:121-127. doi: 10.1016/j.copbio.2017.12.004. Epub 2017 Dec 18. Review.


A Single Community Dominates Structure and Function of a Mixture of Multiple Methanogenic Communities.

Sierocinski P, Milferstedt K, Bayer F, Großkopf T, Alston M, Bastkowski S, Swarbreck D, Hobbs PJ, Soyer OS, Hamelin J, Buckling A.

Curr Biol. 2017 Nov 6;27(21):3390-3395.e4. doi: 10.1016/j.cub.2017.09.056. Epub 2017 Oct 26.


Characteristics of drug-induced anaphylaxis in children and adolescents.

Cavkaytar O, Karaatmaca B, Cetinkaya PG, Esenboga S, Arik Yilmaz E, Sahiner UM, Sekerel BE, Soyer O.

Allergy Asthma Proc. 2017 Sep 1;38(5):56-63. doi: 10.2500/aap.2017.38.4064.


An integrated computational-experimental approach reveals Yersinia pestis genes essential across a narrow or a broad range of environmental conditions.

Senior NJ, Sasidharan K, Saint RJ, Scott AE, Sarkar-Tyson M, Ireland PM, Bullifent HL, Rong Yang Z, Moore K, Oyston PCF, Atkins TP, Atkins HS, Soyer OS, Titball RW.

BMC Microbiol. 2017 Jul 21;17(1):163. doi: 10.1186/s12866-017-1073-8.


Pro and Contra: Provocation Tests in Drug Hypersensitivity.

Soyer O, Sahiner UM, Sekerel BE.

Int J Mol Sci. 2017 Jul 4;18(7). pii: E1437. doi: 10.3390/ijms18071437. Review.


Cooperation in microbial communities and their biotechnological applications.

Cavaliere M, Feng S, Soyer OS, Jiménez JI.

Environ Microbiol. 2017 Aug;19(8):2949-2963. doi: 10.1111/1462-2920.13767. Epub 2017 May 29. Review.


The persistence of chronic spontaneous urticaria in childhood is associated with the urticaria activity score.

Arik Yilmaz E, Karaatmaca B, Cetinkaya PG, Soyer O, Sekerel BE, Sahiner UM.

Allergy Asthma Proc. 2017 Mar 1;38(2):136-142. doi: 10.2500/aap.2017.38.4029.


Role of biochemistry and cytological analysis of cyst fluid for the differential diagnosis of pancreatic cysts: A retrospective cohort study.

Soyer OM, Baran B, Ormeci AC, Sahin D, Gokturk S, Evirgen S, Basar R, Firat P, Akyuz F, Demir K, Besisik F, Kaymakoglu S, Karaca C.

Medicine (Baltimore). 2017 Jan;96(1):e5513. doi: 10.1097/MD.0000000000005513.


Characteristics of children with food protein-induced enterocolitis and allergic proctocolitis.

Arik Yilmaz E, Soyer O, Cavkaytar O, Karaatmaca B, Buyuktiryaki B, Sahiner UM, Sekerel BE, Sackesen C.

Allergy Asthma Proc. 2017 Jan 1;38(1):54-62. doi: 10.2500/aap.2017.38.4023. Erratum in: Allergy Asthma Proc. 2017 Mar 1;38(2):19.


Parasitic Infections in Children with Chronic Spontaneous Urticaria.

Arik Yilmaz E, Karaatmaca B, Sackesen C, Sahiner UM, Cavkaytar O, Sekerel BE, Soyer O.

Int Arch Allergy Immunol. 2016;171(2):130-135. doi: 10.1159/000450953. Epub 2016 Dec 2.


Predictors of treatment requirement in HBeAg-negative chronic hepatitis B patients with persistently normal alanine aminotransferase and high serum HBV DNA levels.

Ormeci A, Aydın Y, Sumnu A, Baran B, Soyer OM, Pınarbasi B, Gokturk S, Gulluoglu M, Onel D, Badur S, Akyuz F, Karaca C, Demir K, Besisik F, Kaymakoglu S.

Int J Infect Dis. 2016 Nov;52:68-73. doi: 10.1016/j.ijid.2016.09.007. Epub 2016 Sep 9.


Microbial diversity arising from thermodynamic constraints.

Großkopf T, Soyer OS.

ISME J. 2016 Nov;10(11):2725-2733. doi: 10.1038/ismej.2016.49. Epub 2016 Apr 1.


Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows, Soyer OS.

ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. Review.


Basal serum tryptase is not a risk factor for immediate-type drug hypersensitivity during childhood.

Cavkaytar O, Karaatmaca B, Arik Yilmaz E, Sahiner UM, Sackesen C, Sekerel BE, Soyer O.

Pediatr Allergy Immunol. 2016 Nov;27(7):736-742. doi: 10.1111/pai.12604. Epub 2016 Jul 12.


Core signalling motif displaying multistability through multi-state enzymes.

Feng S, Sáez M, Wiuf C, Feliu E, Soyer OS.

J R Soc Interface. 2016 Oct;13(123). pii: 20160524.


Endoscopic submucosal resection of gastric subepithelial lesions smaller than 20 mm: a comparison of saline solution-assisted snare and cap band mucosectomy techniques.

Karaca C, Daglilar ES, Soyer OM, Gulluoglu M, Brugge WR.

Gastrointest Endosc. 2017 May;85(5):956-962. doi: 10.1016/j.gie.2016.09.016. Epub 2016 Sep 20.


Rabbit syndrome developing during peginterferon alfa-2a use in chronic hepatitis C.

Soyer OM, Pehlivan A, Ormeci AC, Baran B, Sahin T.

Curr Med Res Opin. 2017 Jan;33(1):55-56. Epub 2016 Sep 14. No abstract available.


Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment.

Großkopf T, Consuegra J, Gaffé J, Willison JC, Lenski RE, Soyer OS, Schneider D.

BMC Evol Biol. 2016 Aug 20;16(1):163. doi: 10.1186/s12862-016-0733-x.


Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers.

Montefusco F, Akman OE, Soyer OS, Bates DG.

PLoS One. 2016 Aug 18;11(8):e0161605. doi: 10.1371/journal.pone.0161605. eCollection 2016.


Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection.

Cizmeci D, Dempster EL, Champion OL, Wagley S, Akman OE, Prior JL, Soyer OS, Mill J, Titball RW.

Sci Rep. 2016 Aug 3;6:30861. doi: 10.1038/srep30861.


A stable genetic polymorphism underpinning microbial syntrophy.

Großkopf T, Zenobi S, Alston M, Folkes L, Swarbreck D, Soyer OS.

ISME J. 2016 Dec;10(12):2844-2853. doi: 10.1038/ismej.2016.80. Epub 2016 Jun 3.


Can Helicobacter pylori be eradicated with high-dose proton pump inhibitor in extensive metabolizers with the CYP2C19 genotypic polymorphism?

Ormeci A, Emrence Z, Baran B, Soyer OM, Gokturk S, Evirgen S, Akyuz F, Karaca C, Besisik F, Kaymakoglu S, Ustek D, Demir K.

Eur Rev Med Pharmacol Sci. 2016 May;20(9):1795-7.


Rare cause of recurrent urticaria in childhood and its unusual presentation: Solitary mastocytoma on vulva.

Arik Yilmaz E, Orhan D, Andiran F, Soyer O.

J Dermatol. 2017 Feb;44(2):213-214. doi: 10.1111/1346-8138.13454. Epub 2016 May 21. No abstract available.


Enzyme Sequestration as a Tuning Point in Controlling Response Dynamics of Signalling Networks.

Feng S, Ollivier JF, Soyer OS.

PLoS Comput Biol. 2016 May 10;12(5):e1004918. doi: 10.1371/journal.pcbi.1004918. eCollection 2016 May.


Use of serial rigid bronchoscopy in the treatment of plastic bronchitis in children.

Soyer T, Yalcin Ş, Emiralioğlu N, Yilmaz EA, Soyer O, Orhan D, Doğru D, Sekerel BE, Tanyel FC.

J Pediatr Surg. 2016 Oct;51(10):1640-3. doi: 10.1016/j.jpedsurg.2016.03.017. Epub 2016 Apr 12.


Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels.

Steinacher A, Bates DG, Akman OE, Soyer OS.

PLoS One. 2016 Apr 15;11(4):e0153295. doi: 10.1371/journal.pone.0153295. eCollection 2016.


What is the impact of capsule endoscopy in the long term period?

Ormeci A, Akyuz F, Baran B, Gokturk S, Ormeci T, Pinarbasi B, Soyer OM, Evirgen S, Akyuz U, Karaca C, Demir K, Kaymakoglu S, Besisik F.

World J Gastrointest Endosc. 2016 Apr 10;8(7):344-8. doi: 10.4253/wjge.v8.i7.344.


Comparison of the efficacy of 12 months and longer courses of interferon therapy for the treatment of chronic delta hepatitis: a retrospective cohort study.

Soyer OM, Baran B, Ormeci AC, Gokturk S, Aydın E, Onel D, Gulluoglu M, Karaca C, Akyuz F, Demir K, Besisik F, Kaymakoglu S.

Postgrad Med. 2016 May;128(4):432-8. doi: 10.1080/00325481.2016.1175310. Epub 2016 Apr 18.


Effect of cytochrome P450 2C19 polymorphisms on the Helicobacter pylori eradication rate following two-week triple therapy with pantoprazole or rabeprazole.

Ormeci A, Emrence Z, Baran B, Gokturk S, Soyer OM, Evirgen S, Akyuz F, Karaca C, Besisik F, Kaymakoglu S, Ustek D, Demir K.

Eur Rev Med Pharmacol Sci. 2016 Mar;20(5):879-85.


Steroid-refractory inflammatory bowel disease is a risk factor for CMV infection.

Ormeci AC, Akyuz F, Baran B, Soyer OM, Gokturk S, Onel M, Onel D, Agacfidan A, Demirci M, Yegen G, Gulluoglu M, Karaca C, Demir K, Besisik F, Kaymakoglu S.

Eur Rev Med Pharmacol Sci. 2016 Mar;20(5):858-65.


Cor a 14, Hazelnut-Specific IgE, and SPT as a Reliable Tool in Hazelnut Allergy Diagnosis in Eastern Mediterranean Children.

Buyuktiryaki B, Cavkaytar O, Sahiner UM, Yilmaz EA, Yavuz ST, Soyer O, Sekerel BE, Tuncer A, Sackesen C.

J Allergy Clin Immunol Pract. 2016 Mar-Apr;4(2):265-72.e3. doi: 10.1016/j.jaip.2015.12.012. Epub 2016 Feb 1.


Right middle lobe atelectasis in children with asthma and prognostic factors.

Soyer O, Ozen C, Cavkaytar O, Senyücel C, Dallar Y.

Allergol Int. 2016 Jul;65(3):253-8. doi: 10.1016/j.alit.2015.12.002. Epub 2016 Jan 22.


Factors associated with the course of egg allergy in children.

Arik Yilmaz E, Cavkaytar O, Buyuktiryaki B, Sekerel BE, Soyer O, Sackesen C.

Ann Allergy Asthma Immunol. 2015 Nov;115(5):434-438.e1. doi: 10.1016/j.anai.2015.08.012.


Testing for clarithromycin hypersensitivity: A diagnostic challenge in childhood.

Cavkaytar O, Karaatmaca B, Yilmaz EA, Sekerel BE, Soyer O.

J Allergy Clin Immunol Pract. 2016 Mar-Apr;4(2):330-2.e1. doi: 10.1016/j.jaip.2015.09.015. Epub 2015 Oct 21. No abstract available.


Low indoleamine 2,3-dioxygenase activity in persistent food allergy in children.

Buyuktiryaki B, Sahiner UM, Girgin G, Birben E, Soyer OU, Cavkaytar O, Cetin C, Arik Yilmaz E, Yavuz ST, Kalayci O, Baydar T, Sackesen C.

Allergy. 2016 Feb;71(2):258-66. doi: 10.1111/all.12785. Epub 2015 Nov 26.


What we miss if standard panel is used for skin prick testing?

Cavkaytar O, Buyuktiryaki B, Sag E, Soyer O, Sekerel BE.

Asian Pac J Allergy Immunol. 2015 Sep;33(3):211-21. doi: 10.12932/AP0564.33.3.2015.


Different Phenotypes of Non-Steroidal Anti-Inflammatory Drug Hypersensitivity during Childhood.

Cavkaytar O, Arik Yilmaz E, Karaatmaca B, Buyuktiryaki B, Sackesen C, Sekerel BE, Soyer O.

Int Arch Allergy Immunol. 2015;167(3):211-21. doi: 10.1159/000438992. Epub 2015 Aug 29.

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