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Items: 9

1.

CalCleaveMKL: a Tool for Calpain Cleavage Prediction.

duVerle DA, Mamitsuka H.

Methods Mol Biol. 2019;1915:121-147. doi: 10.1007/978-1-4939-8988-1_11.

PMID:
30617801
2.

SiBIC: A Tool for Generating a Network of Biclusters Captured by Maximal Frequent Itemset Mining.

Takahashi KI, duVerle DA, Yotsukura S, Takigawa I, Mamitsuka H.

Methods Mol Biol. 2018;1807:95-111. doi: 10.1007/978-1-4939-8561-6_8.

PMID:
30030806
3.

CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data.

duVerle DA, Yotsukura S, Nomura S, Aburatani H, Tsuda K.

BMC Bioinformatics. 2016 Sep 13;17(1):363. doi: 10.1186/s12859-016-1175-6.

4.

Computational recognition for long non-coding RNA (lncRNA): Software and databases.

Yotsukura S, duVerle D, Hancock T, Natsume-Kitatani Y, Mamitsuka H.

Brief Bioinform. 2017 Jan;18(1):9-27. doi: 10.1093/bib/bbv114. Epub 2016 Feb 2. Review.

PMID:
26839320
5.

Predictions of Cleavability of Calpain Proteolysis by Quantitative Structure-Activity Relationship Analysis Using Newly Determined Cleavage Sites and Catalytic Efficiencies of an Oligopeptide Array.

Shinkai-Ouchi F, Koyama S, Ono Y, Hata S, Ojima K, Shindo M, duVerle D, Ueno M, Kitamura F, Doi N, Takigawa I, Mamitsuka H, Sorimachi H.

Mol Cell Proteomics. 2016 Apr;15(4):1262-80. doi: 10.1074/mcp.M115.053413. Epub 2016 Jan 21.

6.

Discovering combinatorial interactions in survival data.

Duverle DA, Takeuchi I, Murakami-Tonami Y, Kadomatsu K, Tsuda K.

Bioinformatics. 2013 Dec 1;29(23):3053-9. doi: 10.1093/bioinformatics/btt532. Epub 2013 Sep 13.

7.

A review of statistical methods for prediction of proteolytic cleavage.

duVerle DA, Mamitsuka H.

Brief Bioinform. 2012 May;13(3):337-49. doi: 10.1093/bib/bbr059. Epub 2011 Dec 2. Review.

PMID:
22138323
8.

Calpain cleavage prediction using multiple kernel learning.

DuVerle DA, Ono Y, Sorimachi H, Mamitsuka H.

PLoS One. 2011 May 3;6(5):e19035. doi: 10.1371/journal.pone.0019035.

9.

CaMPDB: a resource for calpain and modulatory proteolysis.

duVerle D, Takigawa I, Ono Y, Sorimachi H, Mamitsuka H.

Genome Inform. 2010 Jan;22:202-13.

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