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Evolution of an amniote-specific mechanism for modulating ubiquitin signalling via phosphoregulation of the E2 enzyme UBE2D3.

Roman-Trufero M, Ito CM, Pedebos C, Magdalou I, Wang YF, Karimi MM, Moyon B, Webster Z, di Gregorio A, Azuara V, Khalid S, Speck C, Rodriguez T, Dillon N.

Mol Biol Evol. 2020 Mar 7. pii: msaa060. doi: 10.1093/molbev/msaa060. [Epub ahead of print]


Tunicates: From humble sea squirt to proud model organism.

Irvine SQ, Ristoratore F, Di Gregorio A.

Dev Biol. 2019 Apr 15;448(2):69-70. doi: 10.1016/j.ydbio.2019.02.007. Epub 2019 Feb 23. No abstract available.


Positioning a multifunctional basic helix-loop-helix transcription factor within the Ciona notochord gene regulatory network.

Kugler JE, Wu Y, Katikala L, Passamaneck YJ, Addy J, Caballero N, Oda-Ishii I, Maguire JE, Li R, Di Gregorio A.

Dev Biol. 2019 Apr 15;448(2):119-135. doi: 10.1016/j.ydbio.2019.01.002. Epub 2019 Jan 18.


Raw Bioelectrical Impedance Analysis Variables Are Independent Predictors of Early All-Cause Mortality in Patients With COPD.

de Blasio F, Scalfi L, Di Gregorio A, Alicante P, Bianco A, Tantucci C, Bellofiore B, de Blasio F.

Chest. 2019 Jun;155(6):1148-1157. doi: 10.1016/j.chest.2019.01.001. Epub 2019 Jan 17.


Author Correction: P53 and mTOR signalling determine fitness selection through cell competition during early mouse embryonic development.

Bowling S, Di Gregorio A, Sancho M, Pozzi S, Aarts M, Signore M, Schneider MD, Martinez-Barbera JP, Gil J, Rodríguez TA.

Nat Commun. 2018 Aug 2;9(1):3123. doi: 10.1038/s41467-018-05718-z.


P53 and mTOR signalling determine fitness selection through cell competition during early mouse embryonic development.

Bowling S, Di Gregorio A, Sancho M, Pozzi S, Aarts M, Signore M, D Schneider M, Martinez-Barbera JP, Gil J, Rodríguez TA.

Nat Commun. 2018 May 2;9(1):1763. doi: 10.1038/s41467-018-04167-y. Erratum in: Nat Commun. 2018 Aug 2;9(1):3123.


Investigating Evolutionarily Conserved Molecular Mechanisms Controlling Gene Expression in the Notochord.

Maguire JE, Pandey A, Wu Y, Di Gregorio A.

Adv Exp Med Biol. 2018;1029:81-99. doi: 10.1007/978-981-10-7545-2_8.


In Vivo Analysis of Prostaglandins-induced Ocular Surface and Periocular Adnexa Modifications in Patients with Glaucoma.

DI Staso S, Agnifili L, Cecannecchia S, DI Gregorio A, Ciancaglini M.

In Vivo. 2018 Mar-Apr;32(2):211-220. Review.


Malnutrition and sarcopenia assessment in patients with chronic obstructive pulmonary disease according to international diagnostic criteria, and evaluation of raw BIA variables.

de Blasio F, Di Gregorio A, de Blasio F, Bianco A, Bellofiore B, Scalfi L.

Respir Med. 2018 Jan;134:1-5. doi: 10.1016/j.rmed.2017.11.006. Epub 2017 Nov 17.


Three-dimensional Laser Scanning Confocal Analysis of Conjunctival Microcysts in Glaucomatous Patients Before and After Trabeculectomy.

DI Staso S, Agnifili L, DI Gregorio A, Climastone H, Galassi E, Fasanella V, Ciancaglini M.

In Vivo. 2017 Nov-Dec;31(6):1081-1088.


Whole genome sequencing for the molecular characterization of carbapenem-resistant Klebsiella pneumoniae strains isolated at the Italian ASST Fatebenefratelli Sacco Hospital, 2012-2014.

Rimoldi SG, Gentile B, Pagani C, Di Gregorio A, Anselmo A, Palozzi AM, Fortunato A, Pittiglio V, Ridolfo AL, Gismondo MR, Rizzardini G, Lista F.

BMC Infect Dis. 2017 Oct 10;17(1):666. doi: 10.1186/s12879-017-2760-7.


T-Box Genes and Developmental Gene Regulatory Networks in Ascidians.

Di Gregorio A.

Curr Top Dev Biol. 2017;122:55-91. doi: 10.1016/bs.ctdb.2016.08.007. Epub 2016 Oct 8. Review.


DLG1 polarity protein expression associates with the disease progress of low-grade cervical intraepithelial lesions.

Cavatorta AL, Di Gregorio A, Bugnon Valdano M, Marziali F, Cabral M, Bottai H, Cittadini J, Nocito AL, Gardiol D.

Exp Mol Pathol. 2017 Feb;102(1):65-69. doi: 10.1016/j.yexmp.2016.12.008. Epub 2016 Dec 29.


Cell Competition and Its Role in the Regulation of Cell Fitness from Development to Cancer.

Di Gregorio A, Bowling S, Rodriguez TA.

Dev Cell. 2016 Sep 26;38(6):621-34. doi: 10.1016/j.devcel.2016.08.012. Review.


Use of Dithiothreitol to Dislodge Bacteria From the Biofilm on an Aortic Valve in the Operating Theatre: A Case of Infective Endocarditis Caused by Staphylococcus aureus and Proteus mirabilis.

Rimoldi SG, De Vecchi E, Pagani C, Zambelli A, Di Gregorio A, Bosisio E, Vanelli P, Scrofani R, Gismondo MR, Cagnoni G, Antona C.

Ann Thorac Surg. 2016 Oct;102(4):e357-9. doi: 10.1016/j.athoracsur.2016.03.023.


Can Drainage Using a Negative-Pressure Wound Therapy Device Replace Traditional Sample Collection Methods?

Cagnoni G, Rimoldi SG, Pagani C, Savi C, Stefani F, Terzi R, Olivieri P, Tosi G, Parravicini C, Di Gregorio A, Antona C, Gismondo MR.

Surg Infect (Larchmt). 2016 Oct;17(5):577-82. doi: 10.1089/sur.2016.026. Epub 2016 Jun 27.


Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord.

José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A.

PLoS Genet. 2015 Dec 18;11(12):e1005730. doi: 10.1371/journal.pgen.1005730. eCollection 2015 Dec.


Advance in the pathogenesis and treatment of normal-tension glaucoma.

Mastropasqua R, Fasanella V, Agnifili L, Fresina M, Di Staso S, Di Gregorio A, Marchini G, Ciancaglini M.

Prog Brain Res. 2015;221:213-32. doi: 10.1016/bs.pbr.2015.05.007. Epub 2015 Oct 1. Review.


Optical Coherence Tomography Angiography in Retinal Vascular Diseases and Choroidal Neovascularization.

Mastropasqua R, Di Antonio L, Di Staso S, Agnifili L, Di Gregorio A, Ciancaglini M, Mastropasqua L.

J Ophthalmol. 2015;2015:343515. doi: 10.1155/2015/343515. Epub 2015 Sep 27.


Molecular phylogeny of four homeobox genes from the purple sea star Pisaster ochraceus.

Matassi G, Imai JH, Di Gregorio A.

Dev Genes Evol. 2015 Nov;225(6):359-65. doi: 10.1007/s00427-015-0516-1. Epub 2015 Oct 2.


ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.

Brozovic M, Martin C, Dantec C, Dauga D, Mendez M, Simion P, Percher M, Laporte B, Scornavacca C, Di Gregorio A, Fujiwara S, Gineste M, Lowe EK, Piette J, Racioppi C, Ristoratore F, Sasakura Y, Takatori N, Brown TC, Delsuc F, Douzery E, Gissi C, McDougall A, Nishida H, Sawada H, Swalla BJ, Yasuo H, Lemaire P.

Nucleic Acids Res. 2016 Jan 4;44(D1):D808-18. doi: 10.1093/nar/gkv966. Epub 2015 Sep 29.


Heel quantitative ultrasound in HIV-infected patients: a cross-sectional study.

Pinzone MR, Castronuovo D, Di Gregorio A, Celesia BM, Gussio M, Borderi M, Maggi P, Santoro CR, Madeddu G, Cacopardo B, Nunnari G.

Infection. 2016 Apr;44(2):197-203. doi: 10.1007/s15010-015-0842-2. Epub 2015 Sep 9.


Insulin-like genes in ascidians: findings in Ciona and hypotheses on the evolutionary origins of the pancreas.

Thompson JM, Di Gregorio A.

Genesis. 2015 Jan;53(1):82-104. doi: 10.1002/dvg.22832. Epub 2014 Nov 12. Review.


Elevated antinuclear antibodies and altered anti-Epstein-Barr virus immune responses.

Cuomo L, Cirone M, Di Gregorio AO, Vitillo M, Cattivelli M, Magliocca V, Maiorano S, Meledandri M, Scagnolari C, La Rocca S, Trivedi P.

Virus Res. 2015 Jan 2;195:95-9. doi: 10.1016/j.virusres.2014.09.014. Epub 2014 Oct 7.


Ultrasonographic caput epididymis diameter is reduced in non-obstructive azoospermia compared with normozoospermia but is not predictive for successful sperm retrieval after TESE.

Pezzella A, Barbonetti A, D'Andrea S, Necozione S, Micillo A, Di Gregorio A, Francavilla F, Francavilla S.

Hum Reprod. 2014 Jul;29(7):1368-74. Epub 2014 May 7.


Functional Brachyury binding sites establish a temporal read-out of gene expression in the Ciona notochord.

Katikala L, Aihara H, Passamaneck YJ, Gazdoiu S, José-Edwards DS, Kugler JE, Oda-Ishii I, Imai JH, Nibu Y, Di Gregorio A.

PLoS Biol. 2013 Oct;11(10):e1001697. doi: 10.1371/journal.pbio.1001697. Epub 2013 Oct 29.


Competitive interactions eliminate unfit embryonic stem cells at the onset of differentiation.

Sancho M, Di-Gregorio A, George N, Pozzi S, Sánchez JM, Pernaute B, Rodríguez TA.

Dev Cell. 2013 Jul 15;26(1):19-30. doi: 10.1016/j.devcel.2013.06.012.


Short mechanical biological treatment of municipal solid waste allows landfill impact reduction saving waste energy content.

Scaglia B, Salati S, Di Gregorio A, Carrera A, Tambone F, Adani F.

Bioresour Technol. 2013 Sep;143:131-8. doi: 10.1016/j.biortech.2013.05.051. Epub 2013 May 23.


Mechanical biological treatment of organic fraction of MSW affected dissolved organic matter evolution in simulated landfill.

Salati S, Scaglia B, di Gregorio A, Carrera A, Adani F.

Bioresour Technol. 2013 Aug;142:115-20. doi: 10.1016/j.biortech.2013.05.049. Epub 2013 May 21.


Tbx2/3 is an essential mediator within the Brachyury gene network during Ciona notochord development.

José-Edwards DS, Oda-Ishii I, Nibu Y, Di Gregorio A.

Development. 2013 Jun;140(11):2422-33. doi: 10.1242/dev.094227.


From notochord formation to hereditary chordoma: the many roles of Brachyury.

Nibu Y, José-Edwards DS, Di Gregorio A.

Biomed Res Int. 2013;2013:826435. doi: 10.1155/2013/826435. Epub 2013 Mar 31. Review.


Optimization of a method for chromatin immunoprecipitation assays in the marine invertebrate chordate Ciona.

Aihara H, Katikala L, Zeller RW, Di Gregorio A, Nibu Y.

Mar Biotechnol (NY). 2013 Oct;15(5):520-5. doi: 10.1007/s10126-013-9504-5. Epub 2013 Apr 17.


The use of the dynamic respiration index to predict the potential MSW-leachate impacts after short term mechanical biological treatment.

Salati S, Scaglia B, Di Gregorio A, Carrera A, Adani F.

Bioresour Technol. 2013 Jan;128:351-8. doi: 10.1016/j.biortech.2012.10.101. Epub 2012 Oct 31.


Gene signatures associated with mouse postnatal hindbrain neural stem cells and medulloblastoma cancer stem cells identify novel molecular mediators and predict human medulloblastoma molecular classification.

Corno D, Pala M, Cominelli M, Cipelletti B, Leto K, Croci L, Barili V, Brandalise F, Melzi R, Di Gregorio A, Sergi LS, Politi LS, Piemonti L, Bulfone A, Rossi P, Rossi F, Consalez GG, Poliani PL, Galli R.

Cancer Discov. 2012 Jun;2(6):554-68. doi: 10.1158/2159-8290.CD-11-0199. Epub 2012 May 3. Erratum in: Cancer Discov. 2012 Sep;2(9):856. Daniela, Corno [corrected to Corno, Daniela].


Surgical repair of popliteal artery aneurysms remains a safe treatment option in the endovascular era: a 10-year single-center study.

Bracale UM, Corte G, Di Gregorio A, Pecoraro F, Machì P, Rusignuolo F, Bajardi G.

Ann Ital Chir. 2011 Nov-Dec;82(6):443-8.


Modulation of cell-cycle dynamics is required to regulate the number of cerebellar GABAergic interneurons and their rhythm of maturation.

Leto K, Bartolini A, Di Gregorio A, Imperiale D, De Luca A, Parmigiani E, Filipkowski RK, Kaczmarek L, Rossi F.

Development. 2011 Aug;138(16):3463-72. doi: 10.1242/dev.064378. Epub 2011 Jul 19.


The identification of transcription factors expressed in the notochord of Ciona intestinalis adds new potential players to the brachyury gene regulatory network.

José-Edwards DS, Kerner P, Kugler JE, Deng W, Jiang D, Di Gregorio A.

Dev Dyn. 2011 Jul;240(7):1793-805. doi: 10.1002/dvdy.22656. Epub 2011 May 18.


Correct patterning of the primitive streak requires the anterior visceral endoderm.

Stuckey DW, Di Gregorio A, Clements M, Rodriguez TA.

PLoS One. 2011 Mar 18;6(3):e17620. doi: 10.1371/journal.pone.0017620.


Coordination of cell proliferation and anterior-posterior axis establishment in the mouse embryo.

Stuckey DW, Clements M, Di-Gregorio A, Senner CE, Le Tissier P, Srinivas S, Rodriguez TA.

Development. 2011 Apr;138(8):1521-30. doi: 10.1242/dev.063537.


Evolutionary changes in the notochord genetic toolkit: a comparative analysis of notochord genes in the ascidian Ciona and the larvacean Oikopleura.

Kugler JE, Kerner P, Bouquet JM, Jiang D, Di Gregorio A.

BMC Evol Biol. 2011 Jan 20;11:21. doi: 10.1186/1471-2148-11-21.


An early developmental role for miRNAs in the maintenance of extraembryonic stem cells in the mouse embryo.

Spruce T, Pernaute B, Di-Gregorio A, Cobb BS, Merkenschlager M, Manzanares M, Rodriguez TA.

Dev Cell. 2010 Aug 17;19(2):207-19. doi: 10.1016/j.devcel.2010.07.014.


Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis.

Kugler JE, Gazdoiu S, Oda-Ishii I, Passamaneck YJ, Erives AJ, Di Gregorio A.

J Cell Sci. 2010 Jul 15;123(Pt 14):2453-63. doi: 10.1242/jcs.066910.


Differences in the epigenetic and reprogramming properties of pluripotent and extra-embryonic stem cells implicate chromatin remodelling as an important early event in the developing mouse embryo.

Santos J, Pereira CF, Di-Gregorio A, Spruce T, Alder O, Rodriguez T, Azuara V, Merkenschlager M, Fisher AG.

Epigenetics Chromatin. 2010 Jan 12;3:1. doi: 10.1186/1756-8935-3-1.


Direct activation of a notochord cis-regulatory module by Brachyury and FoxA in the ascidian Ciona intestinalis.

Passamaneck YJ, Katikala L, Perrone L, Dunn MP, Oda-Ishii I, Di Gregorio A.

Development. 2009 Nov;136(21):3679-89. doi: 10.1242/dev.038141.


Topographically guided two-step LASIK and standard LASIK in the correction of refractive errors after penetrating keratoplasty.

Spadea L, Saviano M, Di Gregorio A, Di Lodovico D, De Sanctis F.

Eur J Ophthalmol. 2009 Jul-Aug;19(4):535-43.


Genome-wide association study identifies eight loci associated with blood pressure.

Newton-Cheh C, Johnson T, Gateva V, Tobin MD, Bochud M, Coin L, Najjar SS, Zhao JH, Heath SC, Eyheramendy S, Papadakis K, Voight BF, Scott LJ, Zhang F, Farrall M, Tanaka T, Wallace C, Chambers JC, Khaw KT, Nilsson P, van der Harst P, Polidoro S, Grobbee DE, Onland-Moret NC, Bots ML, Wain LV, Elliott KS, Teumer A, Luan J, Lucas G, Kuusisto J, Burton PR, Hadley D, McArdle WL; Wellcome Trust Case Control Consortium, Brown M, Dominiczak A, Newhouse SJ, Samani NJ, Webster J, Zeggini E, Beckmann JS, Bergmann S, Lim N, Song K, Vollenweider P, Waeber G, Waterworth DM, Yuan X, Groop L, Orho-Melander M, Allione A, Di Gregorio A, Guarrera S, Panico S, Ricceri F, Romanazzi V, Sacerdote C, Vineis P, Barroso I, Sandhu MS, Luben RN, Crawford GJ, Jousilahti P, Perola M, Boehnke M, Bonnycastle LL, Collins FS, Jackson AU, Mohlke KL, Stringham HM, Valle TT, Willer CJ, Bergman RN, Morken MA, Döring A, Gieger C, Illig T, Meitinger T, Org E, Pfeufer A, Wichmann HE, Kathiresan S, Marrugat J, O'Donnell CJ, Schwartz SM, Siscovick DS, Subirana I, Freimer NB, Hartikainen AL, McCarthy MI, O'Reilly PF, Peltonen L, Pouta A, de Jong PE, Snieder H, van Gilst WH, Clarke R, Goel A, Hamsten A, Peden JF, Seedorf U, Syvänen AC, Tognoni G, Lakatta EG, Sanna S, Scheet P, Schlessinger D, Scuteri A, Dörr M, Ernst F, Felix SB, Homuth G, Lorbeer R, Reffelmann T, Rettig R, Völker U, Galan P, Gut IG, Hercberg S, Lathrop GM, Zelenika D, Deloukas P, Soranzo N, Williams FM, Zhai G, Salomaa V, Laakso M, Elosua R, Forouhi NG, Völzke H, Uiterwaal CS, van der Schouw YT, Numans ME, Matullo G, Navis G, Berglund G, Bingham SA, Kooner JS, Connell JM, Bandinelli S, Ferrucci L, Watkins H, Spector TD, Tuomilehto J, Altshuler D, Strachan DP, Laan M, Meneton P, Wareham NJ, Uda M, Jarvelin MR, Mooser V, Melander O, Loos RJ, Elliott P, Abecasis GR, Caulfield M, Munroe PB.

Nat Genet. 2009 Jun;41(6):666-76. doi: 10.1038/ng.361. Epub 2009 May 10.


The evolutionarily conserved leprecan gene: its regulation by Brachyury and its role in the developing Ciona notochord.

Dunn MP, Di Gregorio A.

Dev Biol. 2009 Apr 15;328(2):561-74. doi: 10.1016/j.ydbio.2009.02.007. Epub 2009 Feb 13.


A field synopsis on low-penetrance variants in DNA repair genes and cancer susceptibility.

Vineis P, Manuguerra M, Kavvoura FK, Guarrera S, Allione A, Rosa F, Di Gregorio A, Polidoro S, Saletta F, Ioannidis JP, Matullo G.

J Natl Cancer Inst. 2009 Jan 7;101(1):24-36. doi: 10.1093/jnci/djn437. Epub 2008 Dec 30.


Evolutionary conservation of vertebrate notochord genes in the ascidian Ciona intestinalis.

Kugler JE, Passamaneck YJ, Feldman TG, Beh J, Regnier TW, Di Gregorio A.

Genesis. 2008 Nov;46(11):697-710. doi: 10.1002/dvg.20403.


Conservation of notochord gene expression across chordates: insights from the Leprecan gene family.

Capellini TD, Dunn MP, Passamaneck YJ, Selleri L, Di Gregorio A.

Genesis. 2008 Nov;46(11):683-96. doi: 10.1002/dvg.20406.

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