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Items: 1 to 50 of 119

1.

On distributed coordination in networks of cyber-physical systems.

Russo G, di Bernardo M.

Chaos. 2019 May;29(5):053126. doi: 10.1063/1.5093728.

PMID:
31154791
2.

Direct Detection of Membrane-Inserting Fragments Defines the Translocation Pores of a Family of Pathogenic Toxins.

Orrell KE, Tellgren-Roth Å, Di Bernardo M, Zhang Z, Cuviello F, Lundqvist J, von Heijne G, Nilsson I, Melnyk RA.

J Mol Biol. 2018 Sep 14;430(18 Pt B):3190-3199. doi: 10.1016/j.jmb.2018.07.001. Epub 2018 Jul 7.

PMID:
29990469
3.

Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks.

Gorochowski TE, Grierson CS, di Bernardo M.

Sci Adv. 2018 Mar 28;4(3):eaap9751. doi: 10.1126/sciadv.aap9751. eCollection 2018 Mar.

4.

Decision landscapes: visualizing mouse-tracking data.

Zgonnikov A, Aleni A, Piiroinen PT, O'Hora D, di Bernardo M.

R Soc Open Sci. 2017 Nov 8;4(11):170482. doi: 10.1098/rsos.170482. eCollection 2017 Nov.

5.

Developmental effects of the protein kinase inhibitor kenpaullone on the sea urchin embryo.

Anello L, Cavalieri V, Di Bernardo M.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jan;204:36-44. doi: 10.1016/j.cbpc.2017.11.001. Epub 2017 Nov 10.

PMID:
29128602
6.

Influence of facial feedback during a cooperative human-robot task in schizophrenia.

Cohen L, Khoramshahi M, Salesse RN, Bortolon C, Słowiński P, Zhai C, Tsaneva-Atanasova K, Di Bernardo M, Capdevielle D, Marin L, Schmidt RC, Bardy BG, Billard A, Raffard S.

Sci Rep. 2017 Nov 3;7(1):15023. doi: 10.1038/s41598-017-14773-3.

7.

An Orthogonal Multi-input Integration System to Control Gene Expression in Escherichia coli.

Annunziata F, Matyjaszkiewicz A, Fiore G, Grierson CS, Marucci L, di Bernardo M, Savery NJ.

ACS Synth Biol. 2017 Oct 20;6(10):1816-1824. doi: 10.1021/acssynbio.7b00109. Epub 2017 Jul 25.

PMID:
28723080
8.

To Pass or Not to Pass: Modeling the Movement and Affordance Dynamics of a Pick and Place Task.

Lamb M, Kallen RW, Harrison SJ, Di Bernardo M, Minai A, Richardson MJ.

Front Psychol. 2017 Jun 28;8:1061. doi: 10.3389/fpsyg.2017.01061. eCollection 2017.

9.

A Novel Computer-Based Set-Up to Study Movement Coordination in Human Ensembles.

Alderisio F, Lombardi M, Fiore G, di Bernardo M.

Front Psychol. 2017 Jun 9;8:967. doi: 10.3389/fpsyg.2017.00967. eCollection 2017.

10.

BSim 2.0: An Advanced Agent-Based Cell Simulator.

Matyjaszkiewicz A, Fiore G, Annunziata F, Grierson CS, Savery NJ, Marucci L, di Bernardo M.

ACS Synth Biol. 2017 Oct 20;6(10):1969-1972. doi: 10.1021/acssynbio.7b00121. Epub 2017 Jun 23.

PMID:
28585809
11.

Unravelling socio-motor biomarkers in schizophrenia.

Słowiński P, Alderisio F, Zhai C, Shen Y, Tino P, Bortolon C, Capdevielle D, Cohen L, Khoramshahi M, Billard A, Salesse R, Gueugnon M, Marin L, Bardy BG, di Bernardo M, Raffard S, Tsaneva-Atanasova K.

NPJ Schizophr. 2017 Feb 1;3:8. doi: 10.1038/s41537-016-0009-x. eCollection 2017.

12.

Reconstructing the structure of directed and weighted networks of nonlinear oscillators.

Alderisio F, Fiore G, di Bernardo M.

Phys Rev E. 2017 Apr;95(4-1):042302. doi: 10.1103/PhysRevE.95.042302. Epub 2017 Apr 5.

PMID:
28505733
13.

Handgrip Strength Predicts Longitudinal Changes in Clock Drawing Test Performance. An Observational Study in a Sample of Older Non-Demented Adults.

Viscogliosi G, Di Bernardo MG, Ettorre E, Chiriac IM.

J Nutr Health Aging. 2017;21(5):593-596. doi: 10.1007/s12603-016-0816-9.

PMID:
28448092
14.

A sea urchin in vivo model to evaluate Epithelial-Mesenchymal Transition.

Romancino DP, Anello L, Lavanco A, Buffa V, Di Bernardo M, Bongiovanni A.

Dev Growth Differ. 2017 Apr;59(3):141-151. doi: 10.1111/dgd.12353. Epub 2017 Apr 24.

PMID:
28436008
15.

Design and Validation of a Virtual Player for Studying Interpersonal Coordination in the Mirror Game.

Zhai C, Alderisio F, Slowinski P, Tsaneva-Atanasova K, di Bernardo M.

IEEE Trans Cybern. 2018 Mar;48(3):1018-1029. doi: 10.1109/TCYB.2017.2671456. Epub 2017 Mar 7.

PMID:
28287998
16.

In-Silico Analysis and Implementation of a Multicellular Feedback Control Strategy in a Synthetic Bacterial Consortium.

Fiore G, Matyjaszkiewicz A, Annunziata F, Grierson C, Savery NJ, Marucci L, di Bernardo M.

ACS Synth Biol. 2017 Mar 17;6(3):507-517. doi: 10.1021/acssynbio.6b00220. Epub 2016 Dec 20.

PMID:
27997140
17.

Synchronization and local convergence analysis of networks with dynamic diffusive coupling.

Burbano Lombana DA, di Bernardo M.

Chaos. 2016 Nov;26(11):116308.

PMID:
27907998
18.

Design of a Virtual Player for Joint Improvisation with Humans in the Mirror Game.

Zhai C, Alderisio F, Słowiński P, Tsaneva-Atanasova K, di Bernardo M.

PLoS One. 2016 Apr 28;11(4):e0154361. doi: 10.1371/journal.pone.0154361. eCollection 2016.

19.

Entrainment and synchronization in networks of Rayleigh-van der Pol oscillators with diffusive and Haken-Kelso-Bunz couplings.

Alderisio F, Bardy BG, di Bernardo M.

Biol Cybern. 2016 Jun;110(2-3):151-69. doi: 10.1007/s00422-016-0685-7. Epub 2016 Apr 23.

20.

Dynamic similarity promotes interpersonal coordination in joint action.

Słowiński P, Zhai C, Alderisio F, Salesse R, Gueugnon M, Marin L, Bardy BG, di Bernardo M, Tsaneva-Atanasova K.

J R Soc Interface. 2016 Mar;13(116). pii: 20151093. doi: 10.1098/rsif.2015.1093.

21.

In Vivo Real-Time Control of Gene Expression: A Comparative Analysis of Feedback Control Strategies in Yeast.

Fiore G, Perrino G, di Bernardo M, di Bernardo D.

ACS Synth Biol. 2016 Feb 19;5(2):154-62. doi: 10.1021/acssynbio.5b00135. Epub 2015 Dec 4.

PMID:
26554583
22.

Heterogeneity induces emergent functional networks for synchronization.

Scafuti F, Aoki T, di Bernardo M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062913. Epub 2015 Jun 22.

PMID:
26172778
23.

Measuring zebrafish turning rate.

Mwaffo V, Butail S, di Bernardo M, Porfiri M.

Zebrafish. 2015 Jun;12(3):250-4. doi: 10.1089/zeb.2015.1081. Epub 2015 Apr 6.

PMID:
25844837
24.

Common variation at 12q24.13 (OAS3) influences chronic lymphocytic leukemia risk.

Sava GP, Speedy HE, Di Bernardo MC, Dyer MJ, Holroyd A, Sunter NJ, Marr H, Mansouri L, Deaglio S, Karabon L, Frydecka I, Jamroziak K, Woszczyk D, Juliusson G, Smedby KE, Jayne S, Majid A, Wang Y, Dearden C, Hall AG, Mainou-Fowler T, Jackson GH, Summerfield G, Harris RJ, Pettitt AR, Allsup DJ, Bailey JR, Pratt G, Pepper C, Fegan C, Rosenquist R, Catovsky D, Allan JM, Houlston RS.

Leukemia. 2015 Mar;29(3):748-51. doi: 10.1038/leu.2014.311. Epub 2014 Nov 3. No abstract available.

25.

Data-driven stochastic modelling of zebrafish locomotion.

Zienkiewicz A, Barton DA, Porfiri M, di Bernardo M.

J Math Biol. 2015 Nov;71(5):1081-105. doi: 10.1007/s00285-014-0843-2. Epub 2014 Oct 31.

26.

In-vivo real-time control of protein expression from endogenous and synthetic gene networks.

Menolascina F, Fiore G, Orabona E, De Stefano L, Ferry M, Hasty J, di Bernardo M, di Bernardo D.

PLoS Comput Biol. 2014 May 15;10(5):e1003625. doi: 10.1371/journal.pcbi.1003625. eCollection 2014 May.

27.

A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.

Speedy HE, Di Bernardo MC, Sava GP, Dyer MJ, Holroyd A, Wang Y, Sunter NJ, Mansouri L, Juliusson G, Smedby KE, Roos G, Jayne S, Majid A, Dearden C, Hall AG, Mainou-Fowler T, Jackson GH, Summerfield G, Harris RJ, Pettitt AR, Allsup DJ, Bailey JR, Pratt G, Pepper C, Fegan C, Rosenquist R, Catovsky D, Allan JM, Houlston RS.

Nat Genet. 2014 Jan;46(1):56-60. doi: 10.1038/ng.2843. Epub 2013 Dec 1.

PMID:
24292274
28.

An experimental approach to identify dynamical models of transcriptional regulation in living cells.

Fiore G, Menolascina F, di Bernardo M, di Bernardo D.

Chaos. 2013 Jun;23(2):025106. doi: 10.1063/1.4808247.

PMID:
23822504
29.

rs2072135, a low-penetrance variant for chronic lymphocytic leukaemia?

Sava GP, Speedy HE, Di Bernardo MC, Deaglio S, Karabon L, Frydecka I, Woszczyk D, Rossi D, Gaidano G, Mansouri L, Smedby KE, Juliusson G, Rosenquist R, Catovsky D, Houlston RS.

Br J Haematol. 2013 Jul;162(2):221-8. doi: 10.1111/bjh.12366. Epub 2013 May 14.

PMID:
23668599
30.

Identification and characterization of PlAlix, the Alix homologue from the Mediterranean sea urchin Paracentrotus lividus.

Romancino DP, Anello L, Morici G, d'Azzo A, Bongiovanni A, Di Bernardo M.

Dev Growth Differ. 2013 Feb;55(2):237-46. doi: 10.1111/dgd.12023. Epub 2013 Jan 10.

PMID:
23302023
31.

Modelling emergence of oscillations in communicating bacteria: a structured approach from one to many cells.

Mina P, di Bernardo M, Savery NJ, Tsaneva-Atanasova K.

J R Soc Interface. 2013 Jan 6;10(78):20120612. doi: 10.1098/rsif.2012.0612.

32.

BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology.

Gorochowski TE, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova KT, Savery NJ, Grierson CS, di Bernardo M.

PLoS One. 2012;7(8):e42790. doi: 10.1371/journal.pone.0042790. Epub 2012 Aug 24.

33.

Common genetic variation contributes significantly to the risk of developing chronic lymphocytic leukemia.

Di Bernardo MC, Broderick P, Catovsky D, Houlston RS.

Haematologica. 2013 Mar;98(3):e23-4. doi: 10.3324/haematol.2012.072140. Epub 2012 Aug 16. No abstract available.

34.

Risk of developing chronic lymphocytic leukemia is influenced by HLA-A class I variation.

Di Bernardo MC, Broderick P, Harris S, Dyer MJ, Matutes E, Dearden C, Catovsky D, Houlston RS.

Leukemia. 2013 Jan;27(1):255-8. doi: 10.1038/leu.2012.173. Epub 2012 Jul 2. No abstract available.

35.

Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.

Slager SL, Skibola CF, Di Bernardo MC, Conde L, Broderick P, McDonnell SK, Goldin LR, Croft N, Holroyd A, Harris S, Riby J, Serie DJ, Kay NE, Call TG, Bracci PM, Halperin E, Lanasa MC, Cunningham JM, Leis JF, Morrison VA, Spector LG, Vachon CM, Shanafelt TD, Strom SS, Camp NJ, Weinberg JB, Matutes E, Caporaso NE, Wade R, Dyer MJ, Dearden C, Cerhan JR, Catovsky D, Houlston RS.

Blood. 2012 Jul 26;120(4):843-6. doi: 10.1182/blood-2012-03-413591. Epub 2012 Jun 13.

36.

Low social interactions in eating disorder patients in childhood and adulthood: a multi-centre European case control study.

Krug I, Penelo E, Fernandez-Aranda F, Anderluh M, Bellodi L, Cellini E, di Bernardo M, Granero R, Karwautz A, Nacmias B, Ricca V, Sorbi S, Tchanturia K, Wagner G, Collier D, Treasure J.

J Health Psychol. 2013 Jan;18(1):26-37. doi: 10.1177/1359105311435946. Epub 2012 Apr 5.

PMID:
22491496
37.

Comprehensive evaluation of the impact of 14 genetic variants on colorectal cancer phenotype and risk.

Lubbe SJ, Di Bernardo MC, Broderick P, Chandler I, Houlston RS.

Am J Epidemiol. 2012 Jan 1;175(1):1-10. doi: 10.1093/aje/kwr285. Epub 2011 Dec 7.

PMID:
22156018
38.

Pinning control of complex networks via edge snapping.

DeLellis P, di Bernardo M, Porfiri M.

Chaos. 2011 Sep;21(3):033119. doi: 10.1063/1.3626024.

PMID:
21974654
39.

Using aging to visually uncover evolutionary processes on networks.

Gorochowski TE, di Bernardo M, Grierson CS.

IEEE Trans Vis Comput Graph. 2012 Aug;18(8):1343-52.

PMID:
21860063
40.

Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.

Wade R, Di Bernardo MC, Richards S, Rossi D, Crowther-Swanepoel D, Gaidano G, Oscier DG, Catovsky D, Houlston RS.

Haematologica. 2011 Oct;96(10):1496-503. doi: 10.3324/haematol.2011.043471. Epub 2011 Jun 9.

41.

Common genetic variation at 15q25.2 impacts on chronic lymphocytic leukaemia risk.

Crowther-Swanepoel D, Di Bernardo MC, Jamroziak K, Karabon L, Frydecka I, Deaglio S, D'Arena G, Rossi D, Gaidano G, Olver B, Lloyd A, Broderick P, Laurenti L, Szemraj-Rogucka Z, Robak T, Catovsky D, Houlston RS.

Br J Haematol. 2011 Jul;154(2):229-33. doi: 10.1111/j.1365-2141.2011.08706.x. Epub 2011 May 9.

PMID:
21554262
42.

Chromosome 7p11.2 (EGFR) variation influences glioma risk.

Sanson M, Hosking FJ, Shete S, Zelenika D, Dobbins SE, Ma Y, Enciso-Mora V, Idbaih A, Delattre JY, Hoang-Xuan K, Marie Y, Boisselier B, Carpentier C, Wang XW, Di Stefano AL, Labussière M, Gousias K, Schramm J, Boland A, Lechner D, Gut I, Armstrong G, Liu Y, Yu R, Lau C, Di Bernardo MC, Robertson LB, Muir K, Hepworth S, Swerdlow A, Schoemaker MJ, Wichmann HE, Müller M, Schreiber S, Franke A, Moebus S, Eisele L, Försti A, Hemminki K, Lathrop M, Bondy M, Houlston RS, Simon M.

Hum Mol Genet. 2011 Jul 15;20(14):2897-904. doi: 10.1093/hmg/ddr192. Epub 2011 Apr 29.

43.

A multi-functional synthetic gene network: a frequency multiplier, oscillator and switch.

Purcell O, di Bernardo M, Grierson CS, Savery NJ.

PLoS One. 2011 Feb 17;6(2):e16140. doi: 10.1371/journal.pone.0016140.

44.

Design and construction of a versatile synthetic network for bistable gene expression in mammalian systems.

Polynikis A, Cuccato G, Criscuolo S, Hogan SJ, Di Bernardo M, Di Bernardo D.

J Comput Biol. 2011 Feb;18(2):195-203. doi: 10.1089/cmb.2010.0208.

PMID:
21314458
45.

Modeling RNA interference in mammalian cells.

Cuccato G, Polynikis A, Siciliano V, Graziano M, di Bernardo M, di Bernardo D.

BMC Syst Biol. 2011 Jan 27;5:19. doi: 10.1186/1752-0509-5-19.

46.

Hybrid optimal scheduling for intermittent androgen suppression of prostate cancer.

Hirata Y, di Bernardo M, Bruchovsky N, Aihara K.

Chaos. 2010 Dec;20(4):045125. doi: 10.1063/1.3526968.

PMID:
21198137
47.

Discontinuity-induced bifurcations of piecewise smooth dynamical systems.

di Bernardo M, Hogan SJ.

Philos Trans A Math Phys Eng Sci. 2010 Nov 13;368(1930):4915-35. doi: 10.1098/rsta.2010.0198. Review.

PMID:
20921004
48.

Factors of risk and maintenance for eating disorders: psychometric exploration of the cross-cultural questionnaire (CCQ) across five European countries.

Penelo E, Granero R, Krug I, Treasure J, Karwautz A, Anderluh M, Bellodi L, Cellini E, di Bernardo M, Nacmias B, Ricca V, Sorbi S, Tchanturia K, Wagner G, Collier D, Bonillo A, Fernández-Aranda F.

Clin Psychol Psychother. 2011 Nov-Dec;18(6):535-52. doi: 10.1002/cpp.728. Epub 2010 Sep 30.

PMID:
20886660
49.

Natural selection and self-organization in complex adaptive systems.

Di Bernardo M.

Riv Biol. 2010 Jan-Apr;103(1):89-110.

PMID:
20882479
50.

Evolving enhanced topologies for the synchronization of dynamical complex networks.

Gorochowski TE, di Bernardo M, Grierson CS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 2):056212. Epub 2010 May 21.

PMID:
20866312

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