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Coarse-grained and atomic resolution biomolecular docking with the ATTRACT approach.

Glashagen G, de Vries S, Uciechowska-Kaczmarzyk U, Samsonov SA, Murail S, Tuffery P, Zacharias M.

Proteins. 2019 Nov 30. doi: 10.1002/prot.25860. [Epub ahead of print]


Whole digesta properties as influenced by feed processing explain variation in gastrointestinal transit times in pigs.

Martens BMJ, Noorloos M, de Vries S, Schols HA, Bruininx EMAM, Gerrits WJJ.

Br J Nutr. 2019 Dec 14;122(11):1242-1254. doi: 10.1017/S0007114519002198.


Circadian misalignment imposed by nocturnal feeding tends to increase fat deposition in pigs.

van Erp RJJ, de Vries S, van Kempen TATG, Den Hartog LA, Gerrits WJJ.

Br J Nutr. 2019 Nov 27:1-24. doi: 10.1017/S0007114519003052. [Epub ahead of print]


Human chromosome-specific aneuploidy is influenced by DNA-dependent centromeric features.

Dumont M, Gamba R, Gestraud P, Klaasen S, Worrall JT, De Vries SG, Boudreau V, Salinas-Luypaert C, Maddox PS, Lens SM, Kops GJ, McClelland SE, Miga KH, Fachinetti D.

EMBO J. 2019 Nov 21:e102924. doi: 10.15252/embj.2019102924. [Epub ahead of print]


Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) - study protocol of an open-label trial to investigate the mechanisms underlying the effects of a few-foods diet on ADHD symptoms in children.

Stobernack T, de Vries SPW, Rodrigues Pereira R, Pelsser LM, Ter Braak CJF, Aarts E, van Baarlen P, Kleerebezem M, Frankena K, Hontelez S.

BMJ Open. 2019 Nov 5;9(11):e029422. doi: 10.1136/bmjopen-2019-029422.


Aberration-free multi-plane imaging of neural activity from the mammalian brain using a fast-switching liquid crystal spatial light modulator.

Liu R, Ball N, Brockill J, Kuan L, Millman D, White C, Leon A, Williams D, Nishiwaki S, de Vries S, Larkin J, Sullivan D, Slaughterbeck C, Farrell C, Saggau P.

Biomed Opt Express. 2019 Sep 12;10(10):5059-5080. doi: 10.1364/BOE.10.005059. eCollection 2019 Oct 1.


Ongoing evolution of hepatitis B virus during viremia in patients with febrile in Central Africa.

Abe H, Ushijima Y, Bikangui R, Loembe MM, Agnandji ST, de Vries SG, Grobusch MP, Lell B, Yasuda J.

J Med Virol. 2020 Feb;92(2):251-256. doi: 10.1002/jmv.25598. Epub 2019 Oct 3.


Critical Hours and Important Environments: Relationships between Afterschool Physical Activity and the Physical Environment Using GPS, GIS and Accelerometers in 10-12-Year-Old Children.

Remmers T, Thijs C, Ettema D, de Vries S, Slingerland M, Kremers S.

Int J Environ Res Public Health. 2019 Aug 27;16(17). pii: E3116. doi: 10.3390/ijerph16173116.


Nucleic acid and antigen detection tests for leptospirosis.

Yang B, de Vries SG, Ahmed A, Visser BJ, Nagel IM, Spijker R, Grobusch MP, Hartskeerl RA, Goris MG, Leeflang MM.

Cochrane Database Syst Rev. 2019 Aug 1;8:CD011871. doi: 10.1002/14651858.CD011871.pub2.


Exploring outdoor thermal perception-a revised model.

Lenzholzer S, de Vries S.

Int J Biometeorol. 2019 Aug 13. doi: 10.1007/s00484-019-01777-z. [Epub ahead of print]


Increased diet viscosity by oat β-glucans decreases the passage rate of liquids in the stomach and affects digesta physicochemical properties in growing pigs.

Schop M, Jansman AJM, de Vries S, Gerrits WJJ.

Animal. 2019 Aug 13:1-8. doi: 10.1017/S1751731119001824. [Epub ahead of print]


Paramedics, poetry, and film: health policy and systems research at the intersection of theory, art, and practice.

Brady L, De Vries S, Gallow R, George A, Gilson L, Louw M, Martin AW, Shamis K, Stuart T.

Hum Resour Health. 2019 Aug 7;17(1):64. doi: 10.1186/s12960-019-0373-5.


IBD-Associated Dysplastic Lesions Show More Chromosomal Instability Than Sporadic Adenomas.

Wanders LK, Cordes M, Voorham Q, Sie D, de Vries SD, d'haens GRAM, de Boer NKH, Ylstra B, van Grieken NCT, Meijer GA, Dekker E, Carvalho B.

Inflamm Bowel Dis. 2019 Aug 2. pii: izz171. doi: 10.1093/ibd/izz171. [Epub ahead of print]


Nature and mental health: An ecosystem service perspective.

Bratman GN, Anderson CB, Berman MG, Cochran B, de Vries S, Flanders J, Folke C, Frumkin H, Gross JJ, Hartig T, Kahn PH Jr, Kuo M, Lawler JJ, Levin PS, Lindahl T, Meyer-Lindenberg A, Mitchell R, Ouyang Z, Roe J, Scarlett L, Smith JR, van den Bosch M, Wheeler BW, White MP, Zheng H, Daily GC.

Sci Adv. 2019 Jul 24;5(7):eaax0903. doi: 10.1126/sciadv.aax0903. eCollection 2019 Jul. Review.


Comparison of the Health Benefits of Different Types of Nature.

de Vries S.

JAMA Netw Open. 2019 Jul 3;2(7):e198215. doi: 10.1001/jamanetworkopen.2019.8215. No abstract available.


Adverse drug event patterns experienced by patients with diabetes: A diary study in primary care.

Denig P, van Puijenbroek EP, Soliman N, Mol PGM, de Vries ST.

Pharmacoepidemiol Drug Saf. 2019 Sep;28(9):1175-1179. doi: 10.1002/pds.4839. Epub 2019 Jun 17.


Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells.

Rooijers K, Markodimitraki CM, Rang FJ, de Vries SS, Chialastri A, de Luca KL, Mooijman D, Dey SS, Kind J.

Nat Biotechnol. 2019 Jul;37(7):766-772. doi: 10.1038/s41587-019-0150-y. Epub 2019 Jun 17.


Pigs Ferment Enzymatically Digestible Starch when it Is Substituted for Resistant Starch.

van Erp RJJ, de Vries S, van Kempen TATG, Gerrits WJJ.

J Nutr. 2019 Aug 1;149(8):1346-1353. doi: 10.1093/jn/nxz072. Erratum in: J Nutr. 2019 Aug 1;149(8):1487.


Genome-lamina interactions are established de novo in the early mouse embryo.

Borsos M, Perricone SM, Schauer T, Pontabry J, de Luca KL, de Vries SS, Ruiz-Morales ER, Torres-Padilla ME, Kind J.

Nature. 2019 May;569(7758):729-733. doi: 10.1038/s41586-019-1233-0. Epub 2019 May 22.


DaReUS-Loop: a web server to model multiple loops in homology models.

Karami Y, Rey J, Postic G, Murail S, Tufféry P, de Vries SJ.

Nucleic Acids Res. 2019 Jul 2;47(W1):W423-W428. doi: 10.1093/nar/gkz403.


Development of a metabolic pathway transfer and genomic integration system for the syngas-fermenting bacterium Clostridium ljungdahlii.

Philipps G, de Vries S, Jennewein S.

Biotechnol Biofuels. 2019 May 8;12:112. doi: 10.1186/s13068-019-1448-1. eCollection 2019.


The burden of trauma at a district hospital in the Western Cape Province of South Africa.

Zaidi AA, Dixon J, Lupez K, De Vries S, Wallis LA, Ginde A, Mould-Millman NK.

Afr J Emerg Med. 2019;9(Suppl):S14-S20. doi: 10.1016/j.afjem.2019.01.007. Epub 2019 Jan 19.


[Increase in opioid prescribing in extramural care in the Netherlands: assessment of use and prescription behaviour, based on claims data].

Schepens MHJ, Leusink M, de Vries SE, van Erkelens JA, Eleveld H, Prenger A, van Limbeek J, Berger MY.

Ned Tijdschr Geneeskd. 2019 Apr 2;163. pii: D3854. Dutch.


The Elaboration of miRNA Regulation and Gene Regulatory Networks in Plant⁻Microbe Interactions.

de Vries S, de Vries J, Rose LE.

Genes (Basel). 2019 Apr 21;10(4). pii: E310. doi: 10.3390/genes10040310. Review.


Hidden talents in harsh conditions? A preregistered study of memory and reasoning about social dominance.

Frankenhuis WE, de Vries SA, Bianchi J, Ellis BJ.

Dev Sci. 2019 Apr 15:e12835. doi: 10.1111/desc.12835. [Epub ahead of print]


Sex differences in adverse drug reactions reported to the National Pharmacovigilance Centre in the Netherlands: An explorative observational study.

de Vries ST, Denig P, Ekhart C, Burgers JS, Kleefstra N, Mol PGM, van Puijenbroek EP.

Br J Clin Pharmacol. 2019 Jul;85(7):1507-1515. doi: 10.1111/bcp.13923. Epub 2019 Apr 29.


Recommendations on the Use of Mobile Applications for the Collection and Communication of Pharmaceutical Product Safety Information: Lessons from IMI WEB-RADR.

Pierce CE, de Vries ST, Bodin-Parssinen S, Härmark L, Tregunno P, Lewis DJ, Maskell S, Van Eemeren R, Ptaszynska-Neophytou A, Newbould V, Dasgupta N, Wisniewski AFZ, Gama S, Mol PGM.

Drug Saf. 2019 Apr;42(4):477-489. doi: 10.1007/s40264-019-00813-6.


Starch digestion kinetics and mechanisms of hydrolysing enzymes in growing pigs fed processed and native cereal-based diets.

Martens BMJ, Flécher T, de Vries S, Schols HA, Bruininx EMAM, Gerrits WJJ.

Br J Nutr. 2019 May;121(10):1124-1136. doi: 10.1017/S0007114519000503. Epub 2019 Mar 6.


ROTEM reference ranges in a pregnant population from different nationalities/ethnic backgrounds.

Gootjes DV, Kuipers I, Thomassen BJW, Verheul RJ, de Vries S, Mingelen W, van Dunné FM, Ponjee GAE.

Int J Lab Hematol. 2019 Oct;41(5):e99-e103. doi: 10.1111/ijlh.12996. Epub 2019 Mar 4. No abstract available.


Validity and feasibility of an obstacle course to assess fundamental movement skills in a pre-school setting.

Klingberg B, Hoeboer JJAAM, Schranz N, Barnett LM, De Vries SI, Ferrar K.

J Sports Sci. 2019 Jul;37(13):1534-1542. doi: 10.1080/02640414.2019.1575326. Epub 2019 Feb 16.


Use of a Patient-Friendly Terms List in the Adverse Drug Reaction Report Form: A Database Study.

de Vries ST, Harrison J, Revelle P, Ptaszynska-Neophytou A, Radecka A, Ragunathan G, Tregunno P, Denig P, Mol PGM.

Drug Saf. 2019 Jul;42(7):881-886. doi: 10.1007/s40264-019-00800-x.


Quick question or intensive inquiry: The role of message elaboration in the effectiveness of self-persuasive anti-alcohol posters.

Loman JGB, de Vries SA, Kukken N, van Baaren RB, Buijzen M, Müller BCN.

PLoS One. 2019 Jan 24;14(1):e0211030. doi: 10.1371/journal.pone.0211030. eCollection 2019.


The Gambian epauletted fruit bat shows increased genetic divergence in the Ethiopian highlands and in an area of rapid urbanization.

Riesle-Sbarbaro SA, Amponsah-Mensah K, de Vries S, Nicolas V, Lalis A, Suu-Ire R, Cunningham AA, Wood JLN, Sargan DR.

Ecol Evol. 2018 Dec 11;8(24):12803-12820. doi: 10.1002/ece3.4709. eCollection 2018 Dec.


High-Frequency Microdomain Ca2+ Transients and Waves during Early Myelin Internode Remodeling.

Battefeld A, Popovic MA, de Vries SI, Kole MHP.

Cell Rep. 2019 Jan 2;26(1):182-191.e5. doi: 10.1016/j.celrep.2018.12.039.


Cardiovascular Disease Risk After Treatment-Induced Premature Ovarian Insufficiency in Female Survivors of Hodgkin Lymphoma.

Krul IM, Opstal-van Winden AWJ, Janus CPM, Daniëls LA, Appelman Y, Maas AHEM, de Vries S, Jóźwiak K, Aleman BMP, van Leeuwen FE.

J Am Coll Cardiol. 2018 Dec 25;72(25):3374-3375. doi: 10.1016/j.jacc.2018.10.030. No abstract available.


Increasing intake of dietary soluble nutrients affects digesta passage rate in the stomach of growing pigs.

Schop M, Jansman AJM, de Vries S, Gerrits WJJ.

Br J Nutr. 2018 Dec 20:1-25. doi: 10.1017/S0007114518003756. [Epub ahead of print] No abstract available.


Occupational Diseases among Workers in Lower and Higher Socioeconomic Positions.

van der Molen HF, de Vries S, Sluiter JK.

Int J Environ Res Public Health. 2018 Dec 13;15(12). pii: E2849. doi: 10.3390/ijerph15122849.


Go/no-go training changes food evaluation in both morbidly obese and normal-weight individuals.

Chen Z, Veling H, de Vries SP, Bijvank BO, Janssen IMC, Dijksterhuis A, Holland RW.

J Consult Clin Psychol. 2018 Dec;86(12):980-990. doi: 10.1037/ccp0000320.


POLAR-guided signalling complex assembly and localization drive asymmetric cell division.

Houbaert A, Zhang C, Tiwari M, Wang K, de Marcos Serrano A, Savatin DV, Urs MJ, Zhiponova MK, Gudesblat GE, Vanhoutte I, Eeckhout D, Boeren S, Karimi M, Betti C, Jacobs T, Fenoll C, Mena M, de Vries S, De Jaeger G, Russinova E.

Nature. 2018 Nov;563(7732):574-578. doi: 10.1038/s41586-018-0714-x. Epub 2018 Nov 14.


Comparing causes of death of Hodgkin lymphoma and breast cancer patients between medical records and cause-of-death statistics.

de Vries S, Schaapveld M, Kardaun JW, de Bruin KH, Krol AD, Lugtenburg PJ, Jacobse JN, Aleman BM, van Leeuwen FE.

Clin Epidemiol. 2018 Oct 16;10:1523-1531. doi: 10.2147/CLEP.S161359. eCollection 2018.


Visual physiology of the layer 4 cortical circuit in silico.

Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, Feng D, Jarsky T, Lecoq J, Lee B, Li L, Mihalas S, Ocker GK, Olsen SR, Reid RC, Soler-Llavina G, Sorensen SA, Wang Q, Waters J, Scanziani M, Koch C.

PLoS Comput Biol. 2018 Nov 12;14(11):e1006535. doi: 10.1371/journal.pcbi.1006535. eCollection 2018 Nov.


Higher-level cognitive functions in Dutch elite and sub-elite table tennis players.

Elferink-Gemser MT, Faber IR, Visscher C, Hung TM, de Vries SJ, Nijhuis-Van der Sanden MWG.

PLoS One. 2018 Nov 7;13(11):e0206151. doi: 10.1371/journal.pone.0206151. eCollection 2018.


Stereoselective Synthesis of Fused Vinylcyclopropanes by Intramolecular Tsuji-Trost Cascade Cyclization.

Braun J, Ariëns MI, Matsuo BT, de Vries S, van Wordragen EDH, Ellenbroek BD, Vande Velde CML, Orru RVA, Ruijter E.

Org Lett. 2018 Nov 2;20(21):6611-6615. doi: 10.1021/acs.orglett.8b02232. Epub 2018 Oct 12.


Research challenges for cultural ecosystem services and public health in (peri-)urban environments.

Chen X, de Vries S, Assmuth T, Dick J, Hermans T, Hertel O, Jensen A, Jones L, Kabisch S, Lanki T, Lehmann I, Maskell L, Norton L, Reis S.

Sci Total Environ. 2019 Feb 15;651(Pt 2):2118-2129. doi: 10.1016/j.scitotenv.2018.09.030. Epub 2018 Sep 5. Review.


Loss of CRB2 in Müller glial cells modifies a CRB1-associated retinitis pigmentosa phenotype into a Leber congenital amaurosis phenotype.

Quinn PM, Mulder AA, Henrique Alves C, Desrosiers M, de Vries SI, Klooster J, Dalkara D, Koster AJ, Jost CR, Wijnholds J.

Hum Mol Genet. 2019 Jan 1;28(1):105-123. doi: 10.1093/hmg/ddy337.


On plant defense signaling networks and early land plant evolution.

de Vries S, de Vries J, von Dahlen JK, Gould SB, Archibald JM, Rose LE, Slamovits CH.

Commun Integr Biol. 2018 Aug 9;11(3):1-14. doi: 10.1080/19420889.2018.1486168. eCollection 2018. Review.


DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins.

Karami Y, Guyon F, De Vries S, Tufféry P.

Sci Rep. 2018 Sep 12;8(1):13673. doi: 10.1038/s41598-018-32079-w.


Effectiveness of service models and organisational structures supporting tuberculosis identification and management in hard-to-reach populations in countries of low and medium tuberculosis incidence: a systematic review.

Heuvelings CC, Greve PF, de Vries SG, Visser BJ, Bélard S, Janssen S, Cremers AL, Spijker R, Shaw E, Hill RA, Zumla A, Sandgren A, van der Werf MJ, Grobusch MP.

BMJ Open. 2018 Sep 8;8(9):e019642. doi: 10.1136/bmjopen-2017-019642.


Keeping your eye on the target: eye-hand coordination in a repetitive Fitts' task.

de Vries S, Huys R, Zanone PG.

Exp Brain Res. 2018 Dec;236(12):3181-3190. doi: 10.1007/s00221-018-5369-1. Epub 2018 Sep 4.


Self-Reported Effectiveness and Safety of Trokie® Lozenges: A Standardized Formulation for the Buccal Delivery of Cannabis Extracts.

Crowley K, de Vries ST, Moreno-Sanz G.

Front Neurosci. 2018 Aug 14;12:564. doi: 10.3389/fnins.2018.00564. eCollection 2018.

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