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Items: 44

1.

Influence of BRCA1 Germline Mutations in the Somatic Mutational Burden of Triple-Negative Breast Cancer.

Ferreira EN, Brianese RC, de Almeida RVB, Drummond RD, de Souza JE, da Silva IT, de Souza SJ, Carraro DM.

Transl Oncol. 2019 Aug 13;12(11):1453-1460. doi: 10.1016/j.tranon.2019.07.016. [Epub ahead of print]

2.

Thermoluminescence emission on lead oxychloroborate glasses under UV exposure.

Menezes DLA, Bannwart ES, De Souza JE, Rojas SS.

Luminescence. 2019 Jul 31. doi: 10.1002/bio.3691. [Epub ahead of print]

PMID:
31368229
3.

A portrait of germline mutation in Brazilian at-risk for hereditary breast cancer.

de Souza Timoteo AR, Gonçalves AÉMM, Sales LAP, Albuquerque BM, de Souza JES, de Moura PCP, de Aquino MAA, Agnez-Lima LF, Lajus TBP.

Breast Cancer Res Treat. 2018 Dec;172(3):637-646. doi: 10.1007/s10549-018-4938-0. Epub 2018 Aug 29.

PMID:
30159786
4.

Whole Genome Sequencing of the Pirarucu (Arapaima gigas) Supports Independent Emergence of Major Teleost Clades.

Vialle RA, de Souza JES, Lopes KP, Teixeira DG, Alves Sobrinho PA, Ribeiro-Dos-Santos AM, Furtado C, Sakamoto T, Oliveira Silva FA, Herculano Corrêa de Oliveira E, Hamoy IG, Assumpção PP, Ribeiro-Dos-Santos Â, Santos Lima JPM, Seuánez HN, de Souza SJ, Santos S.

Genome Biol Evol. 2018 Sep 1;10(9):2366-2379. doi: 10.1093/gbe/evy130.

5.

Complex Landscape of Germline Variants in Brazilian Patients With Hereditary and Early Onset Breast Cancer.

Torrezan GT, de Almeida FGDSR, Figueiredo MCP, Barros BDF, de Paula CAA, Valieris R, de Souza JES, Ramalho RF, da Silva FCC, Ferreira EN, de Nóbrega AF, Felicio PS, Achatz MI, de Souza SJ, Palmero EI, Carraro DM.

Front Genet. 2018 May 7;9:161. doi: 10.3389/fgene.2018.00161. eCollection 2018.

6.

Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis.

da Silva VL, Fonseca AF, Fonseca M, da Silva TE, Coelho AC, Kroll JE, de Souza JES, Stransky B, de Souza GA, de Souza SJ.

Oncotarget. 2017 Oct 10;8(54):92966-92977. doi: 10.18632/oncotarget.21715. eCollection 2017 Nov 3.

7.

Bioinformatics Analysis of the Human Surfaceome Reveals New Targets for a Variety of Tumor Types.

Fonseca AL, da Silva VL, da Fonsêca MM, Meira IT, da Silva TE, Kroll JE, Ribeiro-Dos-Santos AM, Freitas CR, Furtado R, de Souza JE, Stransky B, de Souza SJ.

Int J Genomics. 2016;2016:8346198. doi: 10.1155/2016/8346198. Epub 2016 Nov 14.

8.

A genomic case study of desmoplastic small round cell tumor: comprehensive analysis reveals insights into potential therapeutic targets and development of a monitoring tool for a rare and aggressive disease.

Ferreira EN, Barros BD, de Souza JE, Almeida RV, Torrezan GT, Garcia S, Krepischi AC, Mello CA, Cunha IW, Pinto CA, Soares FA, Dias-Neto E, Lopes A, de Souza SJ, Carraro DM.

Hum Genomics. 2016 Nov 18;10(1):36.

9.

Differential Expression of Inflammation-Related Genes in Children with Down Syndrome.

Silva CR, Biselli-Périco JM, Zampieri BL, Silva WA Jr, de Souza JE, Bürger MC, Goloni-Bertollo EM, Pavarino ÉC.

Mediators Inflamm. 2016;2016:6985903. doi: 10.1155/2016/6985903. Epub 2016 May 11.

10.

A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.

Putnam CD, Srivatsan A, Nene RV, Martinez SL, Clotfelter SP, Bell SN, Somach SB, de Souza JE, Fonseca AF, de Souza SJ, Kolodner RD.

Nat Commun. 2016 Apr 13;7:11256. doi: 10.1038/ncomms11256.

11.

Populational landscape of INDELs affecting transcription factor-binding sites in humans.

Ribeiro-dos-Santos AM, da Silva VL, de Souza JE, de Souza SJ.

BMC Genomics. 2015 Jul 22;16:536. doi: 10.1186/s12864-015-1744-5.

12.

Altered expression of immune-related genes in children with Down syndrome.

Zampieri BL, Biselli-Périco JM, de Souza JE, Bürger MC, Silva Júnior WA, Goloni-Bertollo EM, Pavarino EC.

PLoS One. 2014 Sep 15;9(9):e107218. doi: 10.1371/journal.pone.0107218. eCollection 2014.

13.

S-score: a scoring system for the identification and prioritization of predicted cancer genes.

de Souza JE, Fonseca AF, Valieris R, Carraro DM, Wang JY, Kolodner RD, de Souza SJ.

PLoS One. 2014 Apr 7;9(4):e94147. doi: 10.1371/journal.pone.0094147. eCollection 2014.

14.

High-throughput sequencing of a South American Amerindian.

Ribeiro-dos-Santos AM, de Souza JE, Almeida R, Alencar DO, Barbosa MS, Gusmão L, Silva WA Jr, de Souza SJ, Silva A, Ribeiro-dos-Santos Â, Darnet S, Santos S.

PLoS One. 2013 Dec 30;8(12):e83340. doi: 10.1371/journal.pone.0083340. eCollection 2013.

15.

The human cell surfaceome of breast tumors.

da Cunha JP, Galante PA, de Souza JE, Pieprzyk M, Carraro DM, Old LJ, Camargo AA, de Souza SJ.

Biomed Res Int. 2013;2013:976816. doi: 10.1155/2013/976816. Epub 2013 Sep 9.

16.

Brief report: The lincRNA Hotair is required for epithelial-to-mesenchymal transition and stemness maintenance of cancer cell lines.

Pádua Alves C, Fonseca AS, Muys BR, de Barros E Lima Bueno R, Bürger MC, de Souza JE, Valente V, Zago MA, Silva WA Jr.

Stem Cells. 2013 Dec;31(12):2827-32. doi: 10.1002/stem.1547.

17.

Testing for natural selection in human exonic splicing regulators associated with evolutionary rate shifts.

Ramalho RF, Gelfman S, de Souza JE, Ast G, de Souza SJ, Meyer D.

J Mol Evol. 2013 Apr;76(4):228-39. doi: 10.1007/s00239-013-9555-2. Epub 2013 Mar 26.

PMID:
23529588
18.

SurfaceomeDB: a cancer-orientated database for genes encoding cell surface proteins.

de Souza JE, Galante PA, de Almeida RV, da Cunha JP, Ohara DT, Ohno-Machado L, Old LJ, de Souza SJ.

Cancer Immun. 2012;12:15. Epub 2012 Dec 28.

19.

In silico analysis and immunohistochemical characterization of NaPi2b protein expression in ovarian carcinoma with monoclonal antibody Mx35.

Soares IC, Simões K, de Souza JE, Okamoto OK, Wakamatsu A, Tuma M, Ritter G, Alves VA.

Appl Immunohistochem Mol Morphol. 2012 Mar;20(2):165-72.

PMID:
22553815
20.

Expression analysis of stem cell-related genes reveal OCT4 as a predictor of poor clinical outcome in medulloblastoma.

Rodini CO, Suzuki DE, Saba-Silva N, Cappellano A, de Souza JE, Cavalheiro S, Toledo SR, Okamoto OK.

J Neurooncol. 2012 Jan;106(1):71-9. doi: 10.1007/s11060-011-0647-9. Epub 2011 Jul 2.

PMID:
21725800
21.

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.

Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA Jr, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA.

Nucleic Acids Res. 2011 Aug;39(14):6056-68. doi: 10.1093/nar/gkr221. Epub 2011 Apr 14.

22.

Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders.

de Souza JE, Ramalho RF, Galante PA, Meyer D, de Souza SJ.

Nucleic Acids Res. 2011 Jul;39(12):4942-8. doi: 10.1093/nar/gkr081. Epub 2011 Mar 11.

23.

Analysis of allelic differential expression in the human genome using allele-specific serial analysis of gene expression tags.

Vidal DO, de Souza JE, Pires LC, Masotti C, Salim AC, Costa MC, Galante PA, de Souza SJ, Camargo AA.

Genome. 2011 Feb;54(2):120-7. doi: 10.1139/G10-103.

PMID:
21326368
24.

Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts.

Ferreira EN, Rangel MC, Galante PF, de Souza JE, Molina GC, de Souza SJ, Carraro DM.

BMC Genomics. 2010 Dec 22;11 Suppl 5:S4. doi: 10.1186/1471-2164-11-S5-S4.

25.

Random X inactivation and extensive mosaicism in human placenta revealed by analysis of allele-specific gene expression along the X chromosome.

Moreira de Mello JC, de Araújo ES, Stabellini R, Fraga AM, de Souza JE, Sumita DR, Camargo AA, Pereira LV.

PLoS One. 2010 Jun 4;5(6):e10947. doi: 10.1371/journal.pone.0010947.

26.

Effect of medium components on the production of a biosurfactant from Candida tropicalis applied to the removal of hydrophobic contaminants in soil.

Batista RM, Rufino RD, Luna JM, de Souza JE, Sarubbo LA.

Water Environ Res. 2010 May;82(5):418-25.

PMID:
20480762
27.

Bioinformatics construction of the human cell surfaceome.

da Cunha JP, Galante PA, de Souza JE, de Souza RF, Carvalho PM, Ohara DT, Moura RP, Oba-Shinja SM, Marie SK, Silva WA Jr, Perez RO, Stransky B, Pieprzyk M, Moore J, Caballero O, Gama-Rodrigues J, Habr-Gama A, Kuo WP, Simpson AJ, Camargo AA, Old LJ, de Souza SJ.

Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16752-7. doi: 10.1073/pnas.0907939106. Epub 2009 Sep 15.

28.

Orthodontic treatment alternative to a class III subdivision malocclusion.

Janson G, De Souza JE, Barros SE, Andrade Junior P, Nakamura AY.

J Appl Oral Sci. 2009 Jul-Aug;17(4):354-63.

29.

Sense-antisense pairs in mammals: functional and evolutionary considerations.

Galante PA, Vidal DO, de Souza JE, Camargo AA, de Souza SJ.

Genome Biol. 2007;8(3):R40.

30.

Extreme dentoalveolar compensation in the treatment of Class III malocclusion.

Janson G, de Souza JE, Alves Fde A, Andrade P Jr, Nakamura A, de Freitas MR, Henriques JF.

Am J Orthod Dentofacial Orthop. 2005 Dec;128(6):787-94.

PMID:
16360922
31.

The impact of SNPs on the interpretation of SAGE and MPSS experimental data.

Silva AP, De Souza JE, Galante PA, Riggins GJ, De Souza SJ, Camargo AA.

Nucleic Acids Res. 2004 Nov 23;32(20):6104-10. Print 2004.

32.

Occlusal changes of Class II malocclusion treatment between Fränkel and the eruption guidance appliances.

Janson G, de Souza JE, de Freitas MR, Henriques JF, Cavalcanti CT.

Angle Orthod. 2004 Aug;74(4):521-5.

PMID:
15387031
33.

ORESTES are enriched in rare exon usage variants affecting the encoded proteins.

Sakabe NJ, de Souza JE, Galante PA, de Oliveira PS, Passetti F, Brentani H, Osório EC, Zaiats AC, Leerkes MR, Kitajima JP, Brentani RR, Strausberg RL, Simpson AJ, de Souza SJ.

C R Biol. 2003 Oct-Nov;326(10-11):979-85.

PMID:
14744104
34.

Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25.

Silva AP, Salim AC, Bulgarelli A, de Souza JE, Osório E, Caballero OL, Iseli C, Stevenson BJ, Jongeneel CV, de Souza SJ, Simpson AJ, Camargo AA.

Gene. 2003 May 22;310:49-57.

PMID:
12801632
35.

pp-Blast: a "pseudo-parallel" Blast.

Osório EC, de Souza JE, Zaiats AC, de Oliveira PS, de Souza SJ.

Braz J Med Biol Res. 2003 Apr;36(4):463-4. Epub 2003 Apr 8.

36.

ExInt: an Exon Intron Database.

Sakharkar M, Passetti F, de Souza JE, Long M, de Souza SJ.

Nucleic Acids Res. 2002 Jan 1;30(1):191-4.

37.

[Stents, the relentless minidestructors of blood clots].

de Souza JE.

Enfoque. 1995 Mar;22(1):10-2. Portuguese. No abstract available.

PMID:
7601065
38.
39.

[Ventricular fibrillation during the ergometric test in a young woman with mitral valve prolapse. Report of a case].

de Oliveira Júnior W, Albuquerque MA, Toscano AC, Barros FJ, de Souza JE, Gomes SL, de Paiva MV.

Arq Bras Cardiol. 1984 Oct;43(4):259-62. Portuguese. No abstract available.

PMID:
6536251
40.

[Dynamic electrocardiography in patients with mitral valve prolapse].

de Oliveira Júnior W, Toscano AC, de Albuquerque MA, Monteiro MF, Pinheiro AM, de Souza JE, Cantarelli E, Assi N.

Arq Bras Cardiol. 1984 Sep;43(3):173-7. Portuguese. No abstract available.

PMID:
6535544
41.

[The cycloergometric test in patients with Wolff-Parkinson-White syndrome].

de Oliveira Júnior W, Toscano AC, de Souza JE, Coutinho RQ, Pedrosa L, Cantarelli EL, Viana FJ, Assi N.

Arq Bras Cardiol. 1982 Jul;39(1):11-4. Portuguese. No abstract available.

PMID:
7168682
42.

[Anatomo-radiological relations in the right ventricle hypoplasia syndrome. Analysis of 25 cases].

Medeiros Sobrinho JH, Luiz C, da Silva VD, Lopez RI, Fontes VF, Konstadinidis T, de Souza JE.

Arq Bras Cardiol. 1981 Apr;36(4):269-76. Portuguese. No abstract available.

PMID:
7325844
43.

[Radiology of the bronchial arteries in pulmonary atresia with ventricular septal defect].

de Medeiros Sobrinho JH, Luiz C, da Silva MV, Rocha Lima M, Fontes WF, de Souza JE.

Arq Bras Cardiol. 1979 Nov;33(5):339-45. Portuguese. No abstract available.

PMID:
550768
44.

[Evolutive echocardiographic studies of patients with the Lillehei-Kaster prosthesis in aortic and mitral position].

Gimenes VM, de Assis SF, Gizzi JC, Pontes SC Jr, de Souza JE, Buffolo E, Silva JC.

Arq Bras Cardiol. 1978 Jun;31(3):185-9. Portuguese. No abstract available.

PMID:
718463

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