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Items: 1 to 50 of 93

1.

NanoSatellite: accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION.

De Roeck A, De Coster W, Bossaerts L, Cacace R, De Pooter T, Van Dongen J, D'Hert S, De Rijk P, Strazisar M, Van Broeckhoven C, Sleegers K.

Genome Biol. 2019 Nov 14;20(1):239. doi: 10.1186/s13059-019-1856-3.

2.

Fluoroquinolone heteroresistance in Mycobacterium tuberculosis: detection by genotypic and phenotypic assays in experimentally mixed populations.

Rigouts L, Miotto P, Schats M, Lempens P, Cabibbe AM, Galbiati S, Lampasona V, de Rijk P, Cirillo DM, de Jong BC.

Sci Rep. 2019 Aug 13;9(1):11760. doi: 10.1038/s41598-019-48289-9.

3.

Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.

De Coster W, De Rijk P, De Roeck A, De Pooter T, D'Hert S, Strazisar M, Sleegers K, Van Broeckhoven C.

Genome Res. 2019 Jul;29(7):1178-1187. doi: 10.1101/gr.244939.118. Epub 2019 Jun 11.

4.

De novo single-nucleotide and copy number variation in discordant monozygotic twins reveals disease-related genes.

Vadgama N, Pittman A, Simpson M, Nirmalananthan N, Murray R, Yoshikawa T, De Rijk P, Rees E, Kirov G, Hughes D, Fitzgerald T, Kristiansen M, Pearce K, Cerveira E, Zhu Q, Zhang C, Lee C, Hardy J, Nasir J.

Eur J Hum Genet. 2019 Jul;27(7):1121-1133. doi: 10.1038/s41431-019-0376-7. Epub 2019 Mar 18.

PMID:
30886340
5.

Loss of DPP6 in neurodegenerative dementia: a genetic player in the dysfunction of neuronal excitability.

Cacace R, Heeman B, Van Mossevelde S, De Roeck A, Hoogmartens J, De Rijk P, Gossye H, De Vos K, De Coster W, Strazisar M, De Baets G, Schymkowitz J, Rousseau F, Geerts N, De Pooter T, Peeters K, Sieben A, Martin JJ, Engelborghs S, Salmon E, Santens P, Vandenberghe R, Cras P, P De Deyn P, C van Swieten J, M van Duijn C, van der Zee J, Sleegers K, Van Broeckhoven C; BELNEU Consortium.

Acta Neuropathol. 2019 Jun;137(6):901-918. doi: 10.1007/s00401-019-01976-3. Epub 2019 Mar 14.

6.

Isoniazid resistance levels of Mycobacterium tuberculosis can largely be predicted by high-confidence resistance-conferring mutations.

Lempens P, Meehan CJ, Vandelannoote K, Fissette K, de Rijk P, Van Deun A, Rigouts L, de Jong BC.

Sci Rep. 2018 Feb 19;8(1):3246. doi: 10.1038/s41598-018-21378-x.

7.

Headache Characteristics and Clinical Features of Elderly Migraine Patients.

de Rijk P, Resseguier N, Donnet A.

Headache. 2018 Apr;58(4):525-533. doi: 10.1111/head.13247. Epub 2017 Dec 13.

PMID:
29235107
8.

The predominance of Ethiopian specific Mycobacterium tuberculosis families and minimal contribution of Mycobacterium bovis in tuberculous lymphadenitis patients in Southwest Ethiopia.

Tadesse M, Abebe G, Bekele A, Bezabih M, de Rijk P, Meehan CJ, de Jong BC, Rigouts L.

Infect Genet Evol. 2017 Nov;55:251-259. doi: 10.1016/j.meegid.2017.09.016. Epub 2017 Sep 15.

PMID:
28919549
9.

The majority of patients with multidrug-resistant tuberculosis in Sub-Saharan Africa present a concomitant resistance to pyrazinamide.

Daneau G, Gumusboga M, De Rijk P, Trebucq A, Rigouts L, Van Deun A, de Jong BC.

Int J Mycobacteriol. 2016 Dec;5 Suppl 1:S46-S47. doi: 10.1016/j.ijmyco.2016.10.015. Epub 2016 Oct 27.

10.

Copy Number Variations in DISC1 and DISC1-Interacting Partners in Major Mental Illness.

Johnstone M, Maclean A, Heyrman L, Lenaerts AS, Nordin A, Nilsson LG, De Rijk P, Goossens D, Adolfsson R, St Clair DM, Hall J, Lawrie SM, McIntosh AM, Del-Favero J, Blackwood DH, Pickard BS.

Mol Neuropsychiatry. 2015 Oct;1(3):175-190. Epub 2015 Oct 7.

11.

Correlation of different phenotypic drug susceptibility testing methods for four fluoroquinolones in Mycobacterium tuberculosis.

Coeck N, de Jong BC, Diels M, de Rijk P, Ardizzoni E, Van Deun A, Rigouts L.

J Antimicrob Chemother. 2016 May;71(5):1233-40. doi: 10.1093/jac/dkv499. Epub 2016 Feb 6.

12.

Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets.

Cammaerts S, Strazisar M, Smets B, Weckhuysen S, Nordin A, De Jonghe P, Adolfsson R, De Rijk P, Del Favero J.

PLoS One. 2015 Dec 29;10(12):e0144428. doi: 10.1371/journal.pone.0144428. eCollection 2015.

13.

Novel mutations in genes causing hereditary spastic paraplegia and Charcot-Marie-Tooth neuropathy identified by an optimized protocol for homozygosity mapping based on whole-exome sequencing.

Kancheva D, Atkinson D, De Rijk P, Zimon M, Chamova T, Mitev V, Yaramis A, Maria Fabrizi G, Topaloglu H, Tournev I, Parman Y, Parma Y, Battaloglu E, Estrada-Cuzcano A, Jordanova A.

Genet Med. 2016 Jun;18(6):600-7. doi: 10.1038/gim.2015.139. Epub 2015 Oct 22. Erratum in: Genet Med. 2016 Jan;18(1):108. Parma, Yesim [corrected to Parman, Yesim].

PMID:
26492578
14.

miRVaS: a tool to predict the impact of genetic variants on miRNAs.

Cammaerts S, Strazisar M, Dierckx J, Del Favero J, De Rijk P.

Nucleic Acids Res. 2016 Feb 18;44(3):e23. doi: 10.1093/nar/gkv921. Epub 2015 Sep 17.

15.

Genetic variants in microRNA genes: impact on microRNA expression, function, and disease.

Cammaerts S, Strazisar M, De Rijk P, Del Favero J.

Front Genet. 2015 May 21;6:186. doi: 10.3389/fgene.2015.00186. eCollection 2015. Review.

16.

First insights into circulating Mycobacterium tuberculosis complex lineages and drug resistance in Guinea.

Ejo M, Gehre F, Barry MD, Sow O, Bah NM, Camara M, Bah B, Uwizeye C, Nduwamahoro E, Fissette K, De Rijk P, Merle C, Olliaro P, Burgos M, Lienhardt C, Rigouts L, de Jong BC.

Infect Genet Evol. 2015 Jul;33:314-9. doi: 10.1016/j.meegid.2015.05.022. Epub 2015 May 21.

17.

Disputed rpoB mutations can frequently cause important rifampicin resistance among new tuberculosis patients.

Van Deun A, Aung KJ, Hossain A, de Rijk P, Gumusboga M, Rigouts L, de Jong BC.

Int J Tuberc Lung Dis. 2015 Feb;19(2):185-90. doi: 10.5588/ijtld.14.0651.

PMID:
25574917
18.

Shifts in Mycobacterial Populations and Emerging Drug-Resistance in West and Central Africa.

Gehre F, Ejo M, Fissette K, de Rijk P, Uwizeye C, Nduwamahoro E, Goovaerts O, Affolabi D, Gninafon M, Lingoupou FM, Barry MD, Sow O, Merle C, Olliaro P, Ba F, Sarr M, Piubello A, Noeske J, Antonio M, Rigouts L, de Jong BC.

PLoS One. 2014 Dec 10;9(12):e110393. doi: 10.1371/journal.pone.0110393. eCollection 2014.

19.

MIR137 variants identified in psychiatric patients affect synaptogenesis and neuronal transmission gene sets.

Strazisar M, Cammaerts S, van der Ven K, Forero DA, Lenaerts AS, Nordin A, Almeida-Souza L, Genovese G, Timmerman V, Liekens A, De Rijk P, Adolfsson R, Callaerts P, Del-Favero J.

Mol Psychiatry. 2015 Apr;20(4):472-81. doi: 10.1038/mp.2014.53. Epub 2014 Jun 3.

PMID:
24888363
20.

Pseudo-outbreak of pre-extensively drug-resistant (Pre-XDR) tuberculosis in Kinshasa: collateral damage caused by false detection of fluoroquinolone resistance by GenoType MTBDRsl.

Kaswa MK, Aloni M, Nkuku L, Bakoko B, Lebeke R, Nzita A, Muyembe JJ, de Jong BC, de Rijk P, Verhaegen J, Boelaert M, Ieven M, Van Deun A.

J Clin Microbiol. 2014 Aug;52(8):2876-80. doi: 10.1128/JCM.00398-14. Epub 2014 May 28.

21.

CMT-associated mutations in glycyl- and tyrosyl-tRNA synthetases exhibit similar pattern of toxicity and share common genetic modifiers in Drosophila.

Ermanoska B, Motley WW, Leitão-Gonçalves R, Asselbergh B, Lee LH, De Rijk P, Sleegers K, Ooms T, Godenschwege TA, Timmerman V, Fischbeck KH, Jordanova A.

Neurobiol Dis. 2014 Aug;68:180-9. doi: 10.1016/j.nbd.2014.04.020. Epub 2014 May 5.

22.

A qPCR assay to detect and quantify Shiga toxin-producing E. coli (STEC) in cattle and on farms: a potential predictive tool for STEC culture-positive farms.

Verstraete K, Van Coillie E, Werbrouck H, Van Weyenberg S, Herman L, Del-Favero J, De Rijk P, De Zutter L, Joris MA, Heyndrickx M, De Reu K.

Toxins (Basel). 2014 Mar 27;6(4):1201-21. doi: 10.3390/toxins6041201.

23.

The first phylogeographic population structure and analysis of transmission dynamics of M. africanum West African 1--combining molecular data from Benin, Nigeria and Sierra Leone.

Gehre F, Antonio M, Faïhun F, Odoun M, Uwizeye C, de Rijk P, de Jong BC, Affolabi D.

PLoS One. 2013 Oct 15;8(10):e77000. doi: 10.1371/journal.pone.0077000. eCollection 2013.

24.

Identification of rare copy number variants in high burden schizophrenia families.

Van Den Bossche MJ, Strazisar M, Cammaerts S, Liekens AM, Vandeweyer G, Depreeuw V, Mattheijssens M, Lenaerts AS, De Zutter S, De Rijk P, Sabbe B, Del-Favero J.

Am J Med Genet B Neuropsychiatr Genet. 2013 Apr;162B(3):273-82. doi: 10.1002/ajmg.b.32146. Epub 2013 Mar 15.

PMID:
23505263
25.

Loss-of-function mutations in HINT1 cause axonal neuropathy with neuromyotonia.

Zimoń M, Baets J, Almeida-Souza L, De Vriendt E, Nikodinovic J, Parman Y, Battaloğlu E, Matur Z, Guergueltcheva V, Tournev I, Auer-Grumbach M, De Rijk P, Petersen BS, Müller T, Fransen E, Van Damme P, Löscher WN, Barišić N, Mitrovic Z, Previtali SC, Topaloğlu H, Bernert G, Beleza-Meireles A, Todorovic S, Savic-Pavicevic D, Ishpekova B, Lechner S, Peeters K, Ooms T, Hahn AF, Züchner S, Timmerman V, Van Dijck P, Rasic VM, Janecke AR, De Jonghe P, Jordanova A.

Nat Genet. 2012 Oct;44(10):1080-3. doi: 10.1038/ng.2406. Epub 2012 Sep 9.

PMID:
22961002
26.

Less cognitive and neurological deficits in schizophrenia patients carrying risk variant in ZNF804A.

Van Den Bossche MJ, Docx L, Morrens M, Cammaerts S, Strazisar M, Bervoets C, Smolders S, Depreeuw V, Lenaerts AS, De Rijk P, Del-Favero J, Sabbe BG.

Neuropsychobiology. 2012;66(3):158-66. doi: 10.1159/000339731. Epub 2012 Aug 29.

PMID:
22948380
27.

Rare copy number variants in neuropsychiatric disorders: Specific phenotype or not?

Van Den Bossche MJ, Johnstone M, Strazisar M, Pickard BS, Goossens D, Lenaerts AS, De Zutter S, Nordin A, Norrback KF, Mendlewicz J, Souery D, De Rijk P, Sabbe BG, Adolfsson R, Blackwood D, Del-Favero J.

Am J Med Genet B Neuropsychiatr Genet. 2012 Oct;159B(7):812-22. doi: 10.1002/ajmg.b.32088. Epub 2012 Aug 22.

PMID:
22911887
28.

Identification of a CACNA2D4 deletion in late onset bipolar disorder patients and implications for the involvement of voltage-dependent calcium channels in psychiatric disorders.

Van Den Bossche MJ, Strazisar M, De Bruyne S, Bervoets C, Lenaerts AS, De Zutter S, Nordin A, Norrback KF, Goossens D, De Rijk P, Green EK, Grozeva D, Mendlewicz J, Craddock N, Sabbe BG, Adolfsson R, Souery D, Del-Favero J.

Am J Med Genet B Neuropsychiatr Genet. 2012 Jun;159B(4):465-75. doi: 10.1002/ajmg.b.32053. Epub 2012 Apr 9.

PMID:
22488967
29.

Integrated detection of multi- and extensively drug-resistant tuberculosis using the nitrate reductase assay.

Ramos E, Fissette K, de Rijk P, Palomino JC, Martin A.

Int J Tuberc Lung Dis. 2012 Jan;16(1):110-3. doi: 10.5588/ijtld.11.0129.

PMID:
22236855
30.

Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing.

Reumers J, De Rijk P, Zhao H, Liekens A, Smeets D, Cleary J, Van Loo P, Van Den Bossche M, Catthoor K, Sabbe B, Despierre E, Vergote I, Hilbush B, Lambrechts D, Del-Favero J.

Nat Biotechnol. 2011 Dec 18;30(1):61-8. doi: 10.1038/nbt.2053.

PMID:
22178994
31.

Evaluation of a multiplex-PCR detection in combination with an isolation method for STEC O26, O103, O111, O145 and sorbitol fermenting O157 in food.

Verstraete K, Robyn J, Del-Favero J, De Rijk P, Joris MA, Herman L, Heyndrickx M, De Zutter L, De Reu K.

Food Microbiol. 2012 Feb;29(1):49-55. doi: 10.1016/j.fm.2011.08.017. Epub 2011 Aug 23.

PMID:
22029918
32.

Sequencing of DISC1 pathway genes reveals increased burden of rare missense variants in schizophrenia patients from a northern Swedish population.

Moens LN, De Rijk P, Reumers J, Van den Bossche MJ, Glassee W, De Zutter S, Lenaerts AS, Nordin A, Nilsson LG, Medina Castello I, Norrback KF, Goossens D, Van Steen K, Adolfsson R, Del-Favero J.

PLoS One. 2011;6(8):e23450. doi: 10.1371/journal.pone.0023450. Epub 2011 Aug 11.

33.

Evaluation of the TB Ag MPT64 Rapid test for the identification of Mycobacterium tuberculosis complex.

Martin A, Bombeeck D, Mulders W, Fissette K, De Rijk P, Palomino JC.

Int J Tuberc Lung Dis. 2011 May;15(5):703-5. doi: 10.5588/ijtld.10.0474.

PMID:
21756526
34.

BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation.

Liekens AM, De Knijf J, Daelemans W, Goethals B, De Rijk P, Del-Favero J.

Genome Biol. 2011 Jun 22;12(6):R57. doi: 10.1186/gb-2011-12-6-r57.

35.

Evaluation of the Genotype® MTBDRplus assay as a tool for drug resistance surveys.

Rigouts L, Hoza AS, De Rijk P, Torrea G, Chonde TM, Basra D, Zignol M, van Leth F, Egwaga SM, Van Deun A.

Int J Tuberc Lung Dis. 2011 Jul;15(7):959-65. doi: 10.5588/ijtld.10.0515.

PMID:
21682972
36.

An alternative, sensitive method to detect Helicobacter pylori DNA in feces.

Horemans T, Deschacht M, Clais S, Van Camp J, de Rijk P, Holvoet J, Van Assche T, Maes L, Cos P.

Helicobacter. 2011 Apr;16(2):113-8. doi: 10.1111/j.1523-5378.2011.00819.x.

PMID:
21435088
37.

Evaluation of the BD MGIT TBc Identification Test (TBc ID), a rapid chromatographic immunoassay for the detection of Mycobacterium tuberculosis complex from liquid culture.

Martin A, Bombeeck D, Fissette K, de Rijk P, Hernández-Neuta I, Del Portillo P, Palomino JC.

J Microbiol Methods. 2011 Feb;84(2):255-7. doi: 10.1016/j.mimet.2010.12.003. Epub 2010 Dec 16.

PMID:
21167879
38.

Resequencing of positional candidates identifies low frequency IL23R coding variants protecting against inflammatory bowel disease.

Momozawa Y, Mni M, Nakamura K, Coppieters W, Almer S, Amininejad L, Cleynen I, Colombel JF, de Rijk P, Dewit O, Finkel Y, Gassull MA, Goossens D, Laukens D, Lémann M, Libioulle C, O'Morain C, Reenaers C, Rutgeerts P, Tysk C, Zelenika D, Lathrop M, Del-Favero J, Hugot JP, de Vos M, Franchimont D, Vermeire S, Louis E, Georges M.

Nat Genet. 2011 Jan;43(1):43-7. doi: 10.1038/ng.733. Epub 2010 Dec 12.

39.

SCAMP5, NBEA and AMISYN: three candidate genes for autism involved in secretion of large dense-core vesicles.

Castermans D, Volders K, Crepel A, Backx L, De Vos R, Freson K, Meulemans S, Vermeesch JR, Schrander-Stumpel CT, De Rijk P, Del-Favero J, Van Geet C, Van De Ven WJ, Steyaert JG, Devriendt K, Creemers JW.

Hum Mol Genet. 2010 Apr 1;19(7):1368-78. doi: 10.1093/hmg/ddq013. Epub 2010 Jan 12.

PMID:
20071347
40.

High level of cross-resistance between kanamycin, amikacin, and capreomycin among Mycobacterium tuberculosis isolates from Georgia and a close relation with mutations in the rrs gene.

Jugheli L, Bzekalava N, de Rijk P, Fissette K, Portaels F, Rigouts L.

Antimicrob Agents Chemother. 2009 Dec;53(12):5064-8. doi: 10.1128/AAC.00851-09. Epub 2009 Sep 14.

41.

Support for NRG1 as a susceptibility factor for schizophrenia in a northern Swedish isolated population.

Alaerts M, Ceulemans S, Forero D, Moens LN, De Zutter S, Heyrman L, Lenaerts AS, Norrback KF, De Rijk P, Nilsson LG, Goossens D, Adolfsson R, Del-Favero J.

Arch Gen Psychiatry. 2009 Aug;66(8):828-37. doi: 10.1001/archgenpsychiatry.2009.82.

PMID:
19652122
42.

Simultaneous mutation and copy number variation (CNV) detection by multiplex PCR-based GS-FLX sequencing.

Goossens D, Moens LN, Nelis E, Lenaerts AS, Glassee W, Kalbe A, Frey B, Kopal G, De Jonghe P, De Rijk P, Del-Favero J.

Hum Mutat. 2009 Mar;30(3):472-6. doi: 10.1002/humu.20873.

PMID:
19058222
43.

Unusual resistance patterns in macrolide-resistant Streptococcus pyogenes harbouring erm(A).

Malhotra-Kumar S, Mazzariol A, Van Heirstraeten L, Lammens C, de Rijk P, Cornaglia G, Goossens H.

J Antimicrob Chemother. 2009 Jan;63(1):42-6. doi: 10.1093/jac/dkn432. Epub 2008 Oct 24.

PMID:
18952616
44.

Detailed analysis of the serotonin transporter gene (SLC6A4) shows no association with bipolar disorder in the Northern Swedish population.

Alaerts M, Ceulemans S, Forero D, Moens LN, De Zutter S, Heyrman L, Lenaerts AS, Norrback KF, Goossens D, De Rijk P, Nilsson LG, Adolfsson R, Del-Favero J.

Am J Med Genet B Neuropsychiatr Genet. 2009 Jun 5;150B(4):585-92. doi: 10.1002/ajmg.b.30853.

PMID:
18792946
45.

First cultivation and characterization of Mycobacterium ulcerans from the environment.

Portaels F, Meyers WM, Ablordey A, Castro AG, Chemlal K, de Rijk P, Elsen P, Fissette K, Fraga AG, Lee R, Mahrous E, Small PL, Stragier P, Torrado E, Van Aerde A, Silva MT, Pedrosa J.

PLoS Negl Trop Dis. 2008 Mar 26;2(3):e178. doi: 10.1371/journal.pntd.0000178.

46.

SNPbox: web-based high-throughput primer design with an eye for repetitive sequences.

Weckx S, De Rijk P, Glassee W, Van Broeckhoven C, Del-Favero J.

Methods Mol Biol. 2007;402:179-200. Review.

PMID:
17951796
47.

Application of the hsp65 PRA method for the rapid identification of mycobacteria isolated from clinical samples in Belgium.

Martin A, Uwizeye C, Fissette K, De Rijk P, Palomino JC, Leao S, Portaels F.

J Microbiol Methods. 2007 Oct;71(1):39-43. Epub 2007 Aug 1.

PMID:
17719666
48.
49.

Endogenous reactivation and true treatment failure as causes of recurrent tuberculosis in a high incidence setting with a low HIV infection.

Shamputa IC, Van Deun A, Salim MA, Hossain MA, Fissette K, de Rijk P, Rigouts L, Portaels F.

Trop Med Int Health. 2007 Jun;12(6):700-8.

50.

Limited fluoroquinolone resistance among Mycobacterium tuberculosis isolates from Rwanda: results of a national survey.

Umubyeyi AN, Rigouts L, Shamputa IC, Fissette K, Elkrim Y, de Rijk PW, Struelens MJ, Portaels F.

J Antimicrob Chemother. 2007 May;59(5):1031-3. Epub 2007 Feb 28.

PMID:
17329272

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