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Items: 42

1.

Unprecedented pathway of reducing equivalents in a diflavin-linked disulfide oxidoreductase.

Buey RM, Arellano JB, López-Maury L, Galindo-Trigo S, Velázquez-Campoy A, Revuelta JL, de Pereda JM, Florencio FJ, Schürmann P, Buchanan BB, Balsera M.

Proc Natl Acad Sci U S A. 2017 Nov 28;114(48):12725-12730. doi: 10.1073/pnas.1713698114. Epub 2017 Nov 13.

2.

The nesprin-cytoskeleton interface probed directly on single nuclei is a mechanically rich system.

Balikov DA, Brady SK, Ko UH, Shin JH, de Pereda JM, Sonnenberg A, Sung HJ, Lang MJ.

Nucleus. 2017 Sep 3;8(5):534-547. doi: 10.1080/19491034.2017.1322237. Epub 2017 Jun 22.

3.

A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases.

Buey RM, Fernández-Justel D, Marcos-Alcalde Í, Winter G, Gómez-Puertas P, de Pereda JM, Luis Revuelta J.

Sci Rep. 2017 Jun 1;7(1):2648. doi: 10.1038/s41598-017-02805-x.

4.

A New Member of the Thioredoxin Reductase Family from Early Oxygenic Photosynthetic Organisms.

Buey RM, Galindo-Trigo S, López-Maury L, Velázquez-Campoy A, Revuelta JL, Florencio FJ, de Pereda JM, Schürmann P, Buchanan BB, Balsera M.

Mol Plant. 2017 Jan 9;10(1):212-215. doi: 10.1016/j.molp.2016.06.019. Epub 2016 Jul 12. No abstract available.

5.

The Structure of the Plakin Domain of Plectin Reveals an Extended Rod-like Shape.

Ortega E, Manso JA, Buey RM, Carballido AM, Carabias A, Sonnenberg A, de Pereda JM.

J Biol Chem. 2016 Sep 2;291(36):18643-62. doi: 10.1074/jbc.M116.732909. Epub 2016 Jul 13.

6.

Purification and Structural Analysis of Plectin and BPAG1e.

Manso JA, García Rubio I, Gómez-Hernández M, Ortega E, Buey RM, Carballido AM, Carabias A, Alonso-García N, de Pereda JM.

Methods Enzymol. 2016;569:177-96. doi: 10.1016/bs.mie.2015.05.002. Epub 2015 May 29.

PMID:
26778559
7.

Guanine nucleotide binding to the Bateman domain mediates the allosteric inhibition of eukaryotic IMP dehydrogenases.

Buey RM, Ledesma-Amaro R, Velázquez-Campoy A, Balsera M, Chagoyen M, de Pereda JM, Revuelta JL.

Nat Commun. 2015 Nov 12;6:8923. doi: 10.1038/ncomms9923.

8.

Increased riboflavin production by manipulation of inosine 5'-monophosphate dehydrogenase in Ashbya gossypii.

Buey RM, Ledesma-Amaro R, Balsera M, de Pereda JM, Revuelta JL.

Appl Microbiol Biotechnol. 2015 Nov;99(22):9577-89. doi: 10.1007/s00253-015-6710-2. Epub 2015 Jul 7.

PMID:
26150243
9.

The rod domain is not essential for the function of plectin in maintaining tissue integrity.

Ketema M, Secades P, Kreft M, Nahidiazar L, Janssen H, Jalink K, de Pereda JM, Sonnenberg A.

Mol Biol Cell. 2015 Jul 1;26(13):2402-17. doi: 10.1091/mbc.E15-01-0043. Epub 2015 May 13.

10.

Combination of X-ray crystallography, SAXS and DEER to obtain the structure of the FnIII-3,4 domains of integrin α6β4.

Alonso-García N, García-Rubio I, Manso JA, Buey RM, Urien H, Sonnenberg A, Jeschke G, de Pereda JM.

Acta Crystallogr D Biol Crystallogr. 2015 Apr;71(Pt 4):969-85. doi: 10.1107/S1399004715002485. Epub 2015 Mar 27.

11.

Exploiting tertiary structure through local folds for crystallographic phasing.

Sammito M, Millán C, Rodríguez DD, de Ilarduya IM, Meindl K, De Marino I, Petrillo G, Buey RM, de Pereda JM, Zeth K, Sheldrick GM, Usón I.

Nat Methods. 2013 Nov;10(11):1099-101. doi: 10.1038/nmeth.2644. Epub 2013 Sep 15.

PMID:
24037245
12.

The autoimmunity risk variant LYP-W620 cooperates with CSK in the regulation of TCR signaling.

de la Puerta ML, Trinidad AG, Rodríguez Mdel C, de Pereda JM, Sánchez Crespo M, Bayón Y, Alonso A.

PLoS One. 2013;8(1):e54569. doi: 10.1371/journal.pone.0054569. Epub 2013 Jan 24.

13.

C3G forms complexes with Bcr-Abl and p38α MAPK at the focal adhesions in chronic myeloid leukemia cells: implication in the regulation of leukemic cell adhesion.

Maia V, Ortiz-Rivero S, Sanz M, Gutierrez-Berzal J, Alvarez-Fernández I, Gutierrez-Herrero S, de Pereda JM, Porras A, Guerrero C.

Cell Commun Signal. 2013 Jan 23;11(1):9. doi: 10.1186/1478-811X-11-9.

14.

Sequence determinants of a microtubule tip localization signal (MtLS).

Buey RM, Sen I, Kortt O, Mohan R, Gfeller D, Veprintsev D, Kretzschmar I, Scheuermann J, Neri D, Zoete V, Michielin O, de Pereda JM, Akhmanova A, Volkmer R, Steinmetz MO.

J Biol Chem. 2012 Aug 17;287(34):28227-42. doi: 10.1074/jbc.M112.373928. Epub 2012 Jun 13.

15.

Nesprin-3 augments peripheral nuclear localization of intermediate filaments in zebrafish.

Postel R, Ketema M, Kuikman I, de Pereda JM, Sonnenberg A.

J Cell Sci. 2011 Mar 1;124(Pt 5):755-64. doi: 10.1242/jcs.081174. Epub 2011 Feb 8.

16.

The structure of the plakin domain of plectin reveals a non-canonical SH3 domain interacting with its fourth spectrin repeat.

Ortega E, Buey RM, Sonnenberg A, de Pereda JM.

J Biol Chem. 2011 Apr 8;286(14):12429-38. doi: 10.1074/jbc.M110.197467. Epub 2011 Feb 1.

17.

Advances and perspectives of the architecture of hemidesmosomes: lessons from structural biology.

de Pereda JM, Ortega E, Alonso-García N, Gómez-Hernández M, Sonnenberg A.

Cell Adh Migr. 2009 Oct-Dec;3(4):361-4. Epub 2009 Oct 16. Review.

18.

Structure of the Calx-beta domain of the integrin beta4 subunit: insights into function and cation-independent stability.

Alonso-García N, Inglés-Prieto A, Sonnenberg A, de Pereda JM.

Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):858-71. doi: 10.1107/S0907444909018745. Epub 2009 Jul 17.

PMID:
19622870
19.

Structural basis of the interaction between integrin alpha6beta4 and plectin at the hemidesmosomes.

de Pereda JM, Lillo MP, Sonnenberg A.

EMBO J. 2009 Apr 22;28(8):1180-90. doi: 10.1038/emboj.2009.48. Epub 2009 Feb 26.

20.

KCTD5, a putative substrate adaptor for cullin3 ubiquitin ligases.

Bayón Y, Trinidad AG, de la Puerta ML, Del Carmen Rodríguez M, Bogetz J, Rojas A, De Pereda JM, Rahmouni S, Williams S, Matsuzawa S, Reed JC, Crespo MS, Mustelin T, Alonso A.

FEBS J. 2008 Aug;275(15):3900-10. doi: 10.1111/j.1742-4658.2008.06537.x. Epub 2008 Jun 28.

21.

The structure of a tandem pair of spectrin repeats of plectin reveals a modular organization of the plakin domain.

Sonnenberg A, Rojas AM, de Pereda JM.

J Mol Biol. 2007 May 18;368(5):1379-91. Epub 2007 Mar 7.

PMID:
17397861
22.

Current insights into the formation and breakdown of hemidesmosomes.

Litjens SH, de Pereda JM, Sonnenberg A.

Trends Cell Biol. 2006 Jul;16(7):376-83. Epub 2006 Jun 6. Review.

PMID:
16757171
23.

Modeling and experimental validation of the binary complex of the plectin actin-binding domain and the first pair of fibronectin type III (FNIII) domains of the beta4 integrin.

Litjens SH, Wilhelmsen K, de Pereda JM, Perrakis A, Sonnenberg A.

J Biol Chem. 2005 Jun 10;280(23):22270-7. Epub 2005 Apr 6.

24.

Structural basis for phosphatidylinositol phosphate kinase type Igamma binding to talin at focal adhesions.

de Pereda JM, Wegener KL, Santelli E, Bate N, Ginsberg MH, Critchley DR, Campbell ID, Liddington RC.

J Biol Chem. 2005 Mar 4;280(9):8381-6. Epub 2004 Dec 28.

25.

Characterization of an actin-binding site within the talin FERM domain.

Lee HS, Bellin RM, Walker DL, Patel B, Powers P, Liu H, Garcia-Alvarez B, de Pereda JM, Liddington RC, Volkmann N, Hanein D, Critchley DR, Robson RM.

J Mol Biol. 2004 Oct 22;343(3):771-84.

PMID:
15465061
26.

Crystal structure of a human peptidyl-tRNA hydrolase reveals a new fold and suggests basis for a bifunctional activity.

De Pereda JM, Waas WF, Jan Y, Ruoslahti E, Schimmel P, Pascual J.

J Biol Chem. 2004 Feb 27;279(9):8111-5. Epub 2003 Dec 5.

27.

Talin binding to integrin beta tails: a final common step in integrin activation.

Tadokoro S, Shattil SJ, Eto K, Tai V, Liddington RC, de Pereda JM, Ginsberg MH, Calderwood DA.

Science. 2003 Oct 3;302(5642):103-6.

28.

Specificity of binding of the plectin actin-binding domain to beta4 integrin.

Litjens SH, Koster J, Kuikman I, van Wilpe S, de Pereda JM, Sonnenberg A.

Mol Biol Cell. 2003 Oct;14(10):4039-50. Epub 2003 Jul 11.

29.
30.

Integrin beta cytoplasmic domain interactions with phosphotyrosine-binding domains: a structural prototype for diversity in integrin signaling.

Calderwood DA, Fujioka Y, de Pereda JM, García-Alvarez B, Nakamoto T, Margolis B, McGlade CJ, Liddington RC, Ginsberg MH.

Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2272-7. Epub 2003 Feb 26.

31.

Cell adhesion: a FERM grasp of membrane dynamics.

Liddington RC, Bankston LA, de Pereda JM.

Curr Biol. 2003 Feb 4;13(3):R94-5.

32.

Structural determinants of integrin recognition by talin.

García-Alvarez B, de Pereda JM, Calderwood DA, Ulmer TS, Critchley D, Campbell ID, Ginsberg MH, Liddington RC.

Mol Cell. 2003 Jan;11(1):49-58.

33.

The phosphotyrosine binding-like domain of talin activates integrins.

Calderwood DA, Yan B, de Pereda JM, Alvarez BG, Fujioka Y, Liddington RC, Ginsberg MH.

J Biol Chem. 2002 Jun 14;277(24):21749-58. Epub 2002 Apr 3.

34.

CD4(+) T cells induced by a DNA vaccine: immunological consequences of epitope-specific lysosomal targeting.

Rodriguez F, Harkins S, Redwine JM, de Pereda JM, Whitton JL.

J Virol. 2001 Nov;75(21):10421-30.

35.

Crystal structure of the vinculin tail suggests a pathway for activation.

Bakolitsa C, de Pereda JM, Bagshaw CR, Critchley DR, Liddington RC.

Cell. 1999 Dec 10;99(6):603-13.

36.
38.

Tubulin secondary structure analysis, limited proteolysis sites, and homology to FtsZ.

de Pereda JM, Leynadier D, Evangelio JA, Chacón P, Andreu JM.

Biochemistry. 1996 Nov 12;35(45):14203-15.

PMID:
8916905
39.

Mapping surface sequences of the tubulin dimer and taxol-induced microtubules with limited proteolysis.

de Pereda JM, Andreu JM.

Biochemistry. 1996 Nov 12;35(45):14184-202.

PMID:
8916904
40.

Comparative study of the colchicine binding site and the assembly of fish and mammalian microtubule proteins.

de Pereda JM, Wallin M, Billger M, Andreu JM.

Cell Motil Cytoskeleton. 1995;30(2):153-63.

PMID:
7606808
41.

Solution structure of Taxotere-induced microtubules to 3-nm resolution. The change in protofilament number is linked to the binding of the taxol side chain.

Andreu JM, Díaz JF, Gil R, de Pereda JM, García de Lacoba M, Peyrot V, Briand C, Towns-Andrews E, Bordas J.

J Biol Chem. 1994 Dec 16;269(50):31785-92.

42.

Site-directed antibodies to tubulin.

Andreu JM, de Pereda JM.

Cell Motil Cytoskeleton. 1993;26(1):1-6. Review. No abstract available.

PMID:
8221905

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