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Items: 9

1.

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks.

Clark NM, Buckner E, Fisher AP, Nelson EC, Nguyen TT, Simmons AR, de Luis Balaguer MA, Butler-Smith T, Sheldon PJ, Bergmann DC, Williams CM, Sozzani R.

Nat Commun. 2019 Dec 6;10(1):5574. doi: 10.1038/s41467-019-13132-2.

2.

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks.

Spurney RJ, Van den Broeck L, Clark NM, Fisher AP, de Luis Balaguer MA, Sozzani R.

Plant J. 2020 Feb;101(3):716-730. doi: 10.1111/tpj.14558. Epub 2019 Nov 27.

PMID:
31571287
3.

Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development.

Vallarino JG, Merchante C, Sánchez-Sevilla JF, de Luis Balaguer MA, Pott DM, Ariza MT, Casañal A, Posé D, Vioque A, Amaya I, Willmitzer L, Solano R, Sozzani R, Fernie AR, Botella MA, Giovannoni JJ, Valpuesta V, Osorio S.

Plant Biotechnol J. 2019 Sep 18. doi: 10.1111/pbi.13257. [Epub ahead of print]

4.

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW.

Smet W, Sevilem I, de Luis Balaguer MA, Wybouw B, Mor E, Miyashima S, Blob B, Roszak P, Jacobs TB, Boekschoten M, Hooiveld G, Sozzani R, Helariutta Y, De Rybel B.

Curr Biol. 2019 Feb 4;29(3):520-529.e6. doi: 10.1016/j.cub.2018.12.041. Epub 2019 Jan 24.

5.

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.

de Luis Balaguer MA, Fisher AP, Clark NM, Fernandez-Espinosa MG, Möller BK, Weijers D, Lohmann JU, Williams C, Lorenzo O, Sozzani R.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7632-E7640. doi: 10.1073/pnas.1707566114. Epub 2017 Aug 21.

6.

Inferring Gene Regulatory Networks in the Arabidopsis Root Using a Dynamic Bayesian Network Approach.

de Luis Balaguer MA, Sozzani R.

Methods Mol Biol. 2017;1629:331-348. doi: 10.1007/978-1-4939-7125-1_21.

PMID:
28623595
7.

Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) for long term imaging in the ZEISS Lightsheet Z.1.

de Luis Balaguer MA, Ramos-Pezzotti M, Rahhal MB, Melvin CE, Johannes E, Horn TJ, Sozzani R.

Dev Biol. 2016 Nov 1;419(1):19-25. doi: 10.1016/j.ydbio.2016.05.029. Epub 2016 May 26.

8.

Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root.

Clark NM, de Luis Balaguer MA, Sozzani R.

Front Plant Sci. 2014 Jul 7;5:328. doi: 10.3389/fpls.2014.00328. eCollection 2014. Review.

9.

Hierarchical modularization of biochemical pathways using fuzzy-c means clustering.

de Luis Balaguer MA, Williams CM.

IEEE Trans Cybern. 2014 Aug;44(8):1473-84. doi: 10.1109/TCYB.2013.2286679. Epub 2013 Nov 1.

PMID:
24196983

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