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Items: 1 to 50 of 67

1.

The impact of illness perceptions and coping on the association between back pain and health outcomes in patients suspected of axial spondyloarthritis: data from the SPACE cohort.

van Lunteren M, Scharloo M, Ez-Zaitouni Z, de Koning A, Landewé R, Fongen C, Ramonda R, Kaptein AA, van Gaalen FA, van der Heijde D.

Arthritis Care Res (Hoboken). 2018 Apr 2. doi: 10.1002/acr.23566. [Epub ahead of print]

PMID:
29609197
2.

In Early Axial Spondyloarthritis, Increasing Disease Activity Is Associated with Worsening of Health-related Quality of Life over Time.

van Lunteren M, Ez-Zaitouni Z, de Koning A, Dagfinrud H, Ramonda R, Jacobsson L, Landewé R, van der Heijde D, van Gaalen FA.

J Rheumatol. 2018 Jun;45(6):779-784. doi: 10.3899/jrheum.170796. Epub 2018 Mar 15.

PMID:
29545448
3.

Magnetic Resonance Imaging of the Sacroiliac Joints Indicating Sacroiliitis According to the Assessment of SpondyloArthritis international Society Definition in Healthy Individuals, Runners, and Women With Postpartum Back Pain.

de Winter J, de Hooge M, van de Sande M, de Jong H, van Hoeven L, de Koning A, Berg IJ, Ramonda R, Baeten D, van der Heijde D, Weel A, Landewé R.

Arthritis Rheumatol. 2018 Jul;70(7):1042-1048. doi: 10.1002/art.40475. Epub 2018 May 23.

4.

Pathophysiology of axial spondyloarthritis: Consensus and controversies.

de Koning A, Schoones JW, van der Heijde D, van Gaalen FA.

Eur J Clin Invest. 2018 May;48(5):e12913. doi: 10.1111/eci.12913. Epub 2018 Mar 13. Review.

PMID:
29460306
5.

Evaluating the environmental impacts of dietary recommendations.

Behrens P, Kiefte-de Jong JC, Bosker T, Rodrigues JFD, de Koning A, Tukker A.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13412-13417. doi: 10.1073/pnas.1711889114. Epub 2017 Dec 4.

6.

Development of the CT Syndesmophyte Score (CTSS) in patients with ankylosing spondylitis: data from the SIAS cohort.

de Bruin F, de Koning A, van den Berg R, Baraliakos X, Braun J, Ramiro S, van Gaalen FA, Reijnierse M, van der Heijde D.

Ann Rheum Dis. 2018 Mar;77(3):371-377. doi: 10.1136/annrheumdis-2017-212553. Epub 2017 Nov 10.

PMID:
29127093
7.

Low-dose CT detects more progression of bone formation in comparison to conventional radiography in patients with ankylosing spondylitis: results from the SIAS cohort.

de Koning A, de Bruin F, van den Berg R, Ramiro S, Baraliakos X, Braun J, van Gaalen FA, Reijnierse M, van der Heijde D.

Ann Rheum Dis. 2018 Feb;77(2):293-299. doi: 10.1136/annrheumdis-2017-211989. Epub 2017 Nov 10.

PMID:
29127092
8.

Allele Age Under Non-Classical Assumptions is Clarified by an Exact Computational Markov Chain Approach.

De Sanctis B, Krukov I, de Koning APJ.

Sci Rep. 2017 Sep 19;7(1):11869. doi: 10.1038/s41598-017-12239-0.

9.

Is optimising gout treatment the key to closing the mortality gap in gout patients?

Ten Brinck RM, de Moel EC, van der Pol JA, van Beest S, de Koning A, Huizinga TWJ.

Ann Rheum Dis. 2018 Jan;77(1):e2. doi: 10.1136/annrheumdis-2017-211638. Epub 2017 May 25. No abstract available.

PMID:
28546256
10.

Wright-Fisher exact solver (WFES): scalable analysis of population genetic models without simulation or diffusion theory.

Krukov I, de Sanctis B, de Koning APJ.

Bioinformatics. 2017 May 1;33(9):1416-1417. doi: 10.1093/bioinformatics/btw802.

11.

EzMap: a simple pipeline for reproducible analysis of the human virome.

Czeczko P, Greenway SC, de Koning APJ.

Bioinformatics. 2017 Aug 15;33(16):2573-2574. doi: 10.1093/bioinformatics/btx202.

PMID:
28383679
12.

Correction: Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake.

Castoe TA, Poole AW, de Koning AP, Jones KL, Tomback DF, Oyler-McCance SJ, Fike JA, Lance SL, Streicher JW, Smith EN, Pollock DD.

PLoS One. 2015 Aug 20;10(8):e0136465. doi: 10.1371/journal.pone.0136465. eCollection 2015. No abstract available.

13.

Gastrin-releasing peptide contributes to the regulation of adult hippocampal neurogenesis and neuronal development.

Walton NM, de Koning A, Xie X, Shin R, Chen Q, Miyake S, Tajinda K, Gross AK, Kogan JH, Heusner CL, Tamura K, Matsumoto M.

Stem Cells. 2014 Sep;32(9):2454-66. doi: 10.1002/stem.1740.

14.

Prolonged electrical stimulation-induced gluteal and hamstring muscle activation and sitting pressure in spinal cord injury: effect of duty cycle.

Smit CA, Legemate KJ, de Koning A, de Groot S, Stolwijk-Swuste JM, Janssen TW.

J Rehabil Res Dev. 2013;50(7):1035-46. doi: 10.1682/JRRD.2012.07.0134.

15.

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.

Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Yandell M, Warren WC, Secor SM, Pollock DD.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20645-50. doi: 10.1073/pnas.1314475110. Epub 2013 Dec 2. Erratum in: Proc Natl Acad Sci U S A. 2013 Dec 17;110(51). doi:10.1073/pnas.1324133111. Bronikowsi, Anne M [corrected to Bronikowski, Anne M]. Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3194.

16.

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2.

17.

Derivation of neural stem cells from an animal model of psychiatric disease.

de Koning A, Walton NM, Shin R, Chen Q, Miyake S, Tajinda K, Gross AK, Kogan JH, Heusner CL, Tamura K, Matsumoto M.

Transl Psychiatry. 2013 Nov 5;3:e323. doi: 10.1038/tp.2013.96.

18.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

19.

Price corrected domestic technology assumption--a method to assess pollution embodied in trade using primary official statistics only. With a case on CO2 emissions embodied in imports to Europe.

Tukker A, de Koning A, Wood R, Moll S, Bouwmeester MC.

Environ Sci Technol. 2013 Feb 19;47(4):1775-83. doi: 10.1021/es303217f. Epub 2013 Jan 31.

PMID:
23268554
20.

Phylogenetics, likelihood, evolution and complexity.

de Koning AP, Gu W, Castoe TA, Pollock DD.

Bioinformatics. 2012 Nov 15;28(22):2989-90. doi: 10.1093/bioinformatics/bts555. Epub 2012 Sep 12.

21.

Thousands of microsatellite loci from the venomous coralsnake Micrurus fulvius and variability of select loci across populations and related species.

Castoe TA, Streicher JW, Meik JM, Ingrasci MJ, Poole AW, de Koning AP, Campbell JA, Parkinson CL, Smith EN, Pollock DD.

Mol Ecol Resour. 2012 Nov;12(6):1105-13. doi: 10.1111/1755-0998.12000. Epub 2012 Sep 1.

22.

The interface of protein structure, protein biophysics, and molecular evolution.

Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sjölander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan S.

Protein Sci. 2012 Jun;21(6):769-85. doi: 10.1002/pro.2071. Epub 2012 Apr 23. Review.

23.

Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake.

Castoe TA, Poole AW, de Koning AP, Jones KL, Tomback DF, Oyler-McCance SJ, Fike JA, Lance SL, Streicher JW, Smith EN, Pollock DD.

PLoS One. 2012;7(2):e30953. doi: 10.1371/journal.pone.0030953. Epub 2012 Feb 14. Erratum in: PLoS One. 2015;10(8):e0136465.

24.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

25.

Repetitive elements may comprise over two-thirds of the human genome.

de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD.

PLoS Genet. 2011 Dec;7(12):e1002384. doi: 10.1371/journal.pgen.1002384. Epub 2011 Dec 1.

26.

Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions.

Pollock DD, de Koning AP, Kim H, Castoe TA, Churchill ME, Kechris KJ.

PLoS One. 2011;6(11):e26105. doi: 10.1371/journal.pone.0026105. Epub 2011 Nov 1.

27.

Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing.

Castoe TA, Hall KT, Guibotsy Mboulas ML, Gu W, de Koning AP, Fox SE, Poole AW, Vemulapalli V, Daza JM, Mockler T, Smith EN, Feschotte C, Pollock DD.

Genome Biol Evol. 2011;3:641-53. doi: 10.1093/gbe/evr043. Epub 2011 May 13.

28.

Adaptive molecular convergence: Molecular evolution versus molecular phylogenetics.

Castoe TA, de Koning AP, Pollock DD.

Commun Integr Biol. 2010 Jan;3(1):67-9.

29.

Dynamic nucleotide mutation gradients and control region usage in squamate reptile mitochondrial genomes.

Castoe TA, Gu W, de Koning AP, Daza JM, Jiang ZJ, Parkinson CL, Pollock DD.

Cytogenet Genome Res. 2009;127(2-4):112-27. doi: 10.1159/000295342. Epub 2010 Mar 8.

30.

Rapid likelihood analysis on large phylogenies using partial sampling of substitution histories.

de Koning AP, Gu W, Pollock DD.

Mol Biol Evol. 2010 Feb;27(2):249-65. doi: 10.1093/molbev/msp228. Epub 2009 Sep 25.

31.

Evidence for an ancient adaptive episode of convergent molecular evolution.

Castoe TA, de Koning AP, Kim HM, Gu W, Noonan BP, Naylor G, Jiang ZJ, Parkinson CL, Pollock DD.

Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8986-91. doi: 10.1073/pnas.0900233106. Epub 2009 Apr 28.

32.

Uncertainty of water type-specific hazardous copper concentrations derived with biotic ligand models.

Vijver MG, De Koning A, Peijnenburg WJ.

Environ Toxicol Chem. 2008 Nov;27(11):2311-9. doi: 10.1897/08-100.1.

PMID:
18517309
33.

Environmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads.

de Koning AP, Noble GP, Heiss AA, Wong J, Keeling PJ.

Environ Microbiol. 2008 Jan;10(1):65-74. doi: 10.1111/j.1462-2920.2007.01430.x.

PMID:
18211267
34.

Effects of Fis on Escherichia coli gene expression during different growth stages.

Bradley MD, Beach MB, de Koning AP, Pratt TS, Osuna R.

Microbiology. 2007 Sep;153(Pt 9):2922-40.

PMID:
17768236
35.

The quality of life of family caregivers of eating disorder patients.

de la Rie SM, van Furth EF, De Koning A, Noordenbos G, Donker MC.

Eat Disord. 2005 Jul-Sep;13(4):345-51.

PMID:
16864349
37.

Expressed sequence tag (EST) survey of the highly adapted green algal parasite, Helicosporidium.

de Koning AP, Tartar A, Boucias DG, Keeling PJ.

Protist. 2005 Aug;156(2):181-90.

PMID:
16171185
39.

Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference.

Krishnan NM, Seligmann H, Stewart CB, De Koning AP, Pollock DD.

Mol Biol Evol. 2004 Oct;21(10):1871-83. Epub 2004 Jun 30.

PMID:
15229290
40.

Association of multiple cellular stress pathways with accelerated atherosclerosis in hyperhomocysteinemic apolipoprotein E-deficient mice.

Zhou J, Werstuck GH, Lhoták S, de Koning AB, Sood SK, Hossain GS, Møller J, Ritskes-Hoitinga M, Falk E, Dayal S, Lentz SR, Austin RC.

Circulation. 2004 Jul 13;110(2):207-13. Epub 2004 Jun 21.

41.

Determination of glycerol by gas chromatography using meso-erythritol as internal standard.

de Koning AJ.

Analyst. 2004 Apr;129(4):352-4. Epub 2004 Mar 8.

PMID:
15042168
42.

TDAG51 is induced by homocysteine, promotes detachment-mediated programmed cell death, and contributes to the cevelopment of atherosclerosis in hyperhomocysteinemia.

Hossain GS, van Thienen JV, Werstuck GH, Zhou J, Sood SK, Dickhout JG, de Koning AB, Tang D, Wu D, Falk E, Poddar R, Jacobsen DW, Zhang K, Kaufman RJ, Austin RC.

J Biol Chem. 2003 Aug 8;278(32):30317-27. Epub 2003 May 8.

43.
44.

Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis.

de Koning AP, Brinkman FS, Jones SJ, Keeling PJ.

Mol Biol Evol. 2000 Nov;17(11):1769-73. No abstract available.

PMID:
11070064
45.

Comparing in situ distribution coefficients and exchangeability of radiocaesium in freshwater sediments with laboratory predictions.

De Koning A, Geelhoed-Bonouvrie PA, Comans RN.

Sci Total Environ. 2000 Jul 20;257(1):29-35.

PMID:
10943900
46.

Connexin-43 gap junctions are involved in multiconnexin-expressing stromal support of hemopoietic progenitors and stem cells.

Cancelas JA, Koevoet WL, de Koning AE, Mayen AE, Rombouts EJ, Ploemacher RE.

Blood. 2000 Jul 15;96(2):498-505.

48.

Does transmembrane communication through gap junctions enable stem cells to overcome stromal inhibition?

Rosendaal M, Mayen A, de Koning A, Dunina-Barkovskaya T, Krenács T, Ploemacher R.

Leukemia. 1997 Aug;11(8):1281-9.

PMID:
9264382
49.

Intracellular retention of hepatitis B virus surface protein mutants devoid of amino-terminal pre-S1 sequences.

Gallina A, De Koning A, Rossi F, Milanesi G.

J Gen Virol. 1994 Feb;75 ( Pt 2):449-55.

PMID:
8113770
50.

Immunobiology and pathogenesis of hepatitis C virus infection.

Mondelli MU, Cerino A, Bellotti V, de Koning A.

Res Virol. 1993 Jul-Aug;144(4):269-74. Review. No abstract available.

PMID:
8210707

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