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Items: 1 to 50 of 283

1.

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms.

Bahrndorff S, Ruiz-González A, de Jonge N, Nielsen JL, Skovgård H, Pertoldi C.

BMC Genomics. 2020 Jan 21;21(1):66. doi: 10.1186/s12864-020-6445-z.

PMID:
31964338
2.

Erratum to "Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes" [Water Res. 154 (2019) 104-116].

Laureni M, Weissbrodt DG, Villez K, Robin O, de Jonge N, Rosenthal A, Wells G, Nielsen JL, Morgenroth E, Joss A.

Water Res. 2020 Feb 1;169:115133. doi: 10.1016/j.watres.2019.115133. Epub 2019 Dec 10. No abstract available.

PMID:
31835130
3.

Detecting single ORAI1 proteins within the plasma membrane reveals higher-order channel complexes.

Alansary D, Peckys DB, Niemeyer BA, de Jonge N.

J Cell Sci. 2020 Jan 3;133(1). pii: jcs240358. doi: 10.1242/jcs.240358.

PMID:
31822631
4.

General and selective deoxygenation by hydrogen using a reusable earth-abundant metal catalyst.

Schwob T, Kunnas P, de Jonge N, Papp C, Steinrück HP, Kempe R.

Sci Adv. 2019 Nov 15;5(11):eaav3680. doi: 10.1126/sciadv.aav3680. eCollection 2019 Nov.

5.

Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments.

Lukassen MB, de Jonge N, Bjerregaard SM, Podduturi R, Jørgensen NOG, Petersen MA, David GS, da Silva RJ, Nielsen JL.

Front Microbiol. 2019 Oct 31;10:2447. doi: 10.3389/fmicb.2019.02447. eCollection 2019.

6.

Visualisation of HER2 homodimers in single cells from HER2 overexpressing primary formalin fixed paraffin embedded tumour tissue.

Peckys DB, Hirsch D, Gaiser T, de Jonge N.

Mol Med. 2019 Aug 28;25(1):42. doi: 10.1186/s10020-019-0108-z.

7.

Cardiac amyloidosis: the need for early diagnosis.

Oerlemans MIFJ, Rutten KHG, Minnema MC, Raymakers RAP, Asselbergs FW, de Jonge N.

Neth Heart J. 2019 Nov;27(11):525-536. doi: 10.1007/s12471-019-1299-1. Review.

8.

Stick or leave - Pushing methanogens to biofilm formation for ex situ biomethanation.

Jensen MB, Strübing D, de Jonge N, Nielsen JL, Ottosen LDM, Koch K, Kofoed MVW.

Bioresour Technol. 2019 Nov;291:121784. doi: 10.1016/j.biortech.2019.121784. Epub 2019 Jul 15.

PMID:
31344638
9.

Liquid-Phase Electron Microscopy with Controllable Liquid Thickness.

Keskin S, Kunnas P, de Jonge N.

Nano Lett. 2019 Jul 10;19(7):4608-4613. doi: 10.1021/acs.nanolett.9b01576. Epub 2019 Jun 19.

PMID:
31244240
10.

Effects of ozone treatment on performance and microbial community composition in biofiltration systems treating ethyl acetate vapours.

Covarrubias-García I, de Jonge N, Arriaga S, Nielsen JL.

Chemosphere. 2019 Oct;233:67-75. doi: 10.1016/j.chemosphere.2019.05.232. Epub 2019 May 27.

PMID:
31170585
11.

UNRAVEL: big data analytics research data platform to improve care of patients with cardiomyopathies using routine electronic health records and standardised biobanking.

Sammani A, Jansen M, Linschoten M, Bagheri A, de Jonge N, Kirkels H, van Laake LW, Vink A, van Tintelen JP, Dooijes D, Te Riele ASJM, Harakalova M, Baas AF, Asselbergs FW.

Neth Heart J. 2019 Sep;27(9):426-434. doi: 10.1007/s12471-019-1288-4.

12.

2019 EACTS Expert Consensus on long-term mechanical circulatory support.

Potapov EV, Antonides C, Crespo-Leiro MG, Combes A, Färber G, Hannan MM, Kukucka M, de Jonge N, Loforte A, Lund LH, Mohacsi P, Morshuis M, Netuka I, Özbaran M, Pappalardo F, Scandroglio AM, Schweiger M, Tsui S, Zimpfer D, Gustafsson F.

Eur J Cardiothorac Surg. 2019 Aug 1;56(2):230-270. doi: 10.1093/ejcts/ezz098.

13.

Biogas upgrading with hydrogenotrophic methanogenic biofilms.

Maegaard K, Garcia-Robledo E, Kofoed MVW, Agneessens LM, de Jonge N, Nielsen JL, Ottosen LDM, Nielsen LP, Revsbech NP.

Bioresour Technol. 2019 Sep;287:121422. doi: 10.1016/j.biortech.2019.121422. Epub 2019 May 6.

PMID:
31085427
14.

Oil droplet formation on pellicle covered tooth surfaces studied with environmental scanning electron microscopy.

Peckys DB, DE Jonge N, Hannig M.

J Microsc. 2019 Jun;274(3):158-167. doi: 10.1111/jmi.12794. Epub 2019 Apr 29.

PMID:
31008531
15.

Non-HLA Genetic Factors and Their Influence on Heart Transplant Outcomes: A Systematic Review.

van Setten J, Warmerdam EG, Groot OQ, de Jonge N, Keating B, Asselbergs FW.

Transplant Direct. 2019 Jan 21;5(2):e422. doi: 10.1097/TXD.0000000000000859. eCollection 2019 Feb.

16.

The 2018 correlative microscopy techniques roadmap.

Ando T, Bhamidimarri SP, Brending N, Colin-York H, Collinson L, De Jonge N, de Pablo PJ, Debroye E, Eggeling C, Franck C, Fritzsche M, Gerritsen H, Giepmans BNG, Grunewald K, Hofkens J, Hoogenboom JP, Janssen KPF, Kaufman R, Klumpermann J, Kurniawan N, Kusch J, Liv N, Parekh V, Peckys DB, Rehfeldt F, Reutens DC, Roeffaers MBJ, Salditt T, Schaap IAT, Schwarz US, Verkade P, Vogel MW, Wagner R, Winterhalter M, Yuan H, Zifarelli G.

J Phys D Appl Phys. 2018 Nov 7;51(44):443001. doi: 10.1088/1361-6463/aad055. Epub 2018 Aug 31. Review.

17.

Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes.

Laureni M, Weissbrodt DG, Villez K, Robin O, de Jonge N, Rosenthal A, Wells G, Nielsen JL, Morgenroth E, Joss A.

Water Res. 2019 May 1;154:104-116. doi: 10.1016/j.watres.2018.12.051. Epub 2019 Jan 7. Erratum in: Water Res. 2020 Feb 1;169:115133.

18.

Preface to the special issue on liquid-phase electron microscopy.

Abellan P, de Jonge N.

Micron. 2019 Apr;119:117-118. doi: 10.1016/j.micron.2018.12.005. Epub 2018 Dec 21. No abstract available.

PMID:
30594435
19.

Human/robotic interaction: vision limits performance in simulated vitreoretinal surgery.

de Smet MD, de Jonge N, Iannetta D, Faridpooya K, van Oosterhout E, Naus G, Meenink TCM, Mura M, Beelen MJ.

Acta Ophthalmol. 2019 Nov;97(7):672-678. doi: 10.1111/aos.14003. Epub 2018 Dec 27.

PMID:
30588753
20.

Dynamics of gold nanoparticle clusters observed with liquid-phase electron microscopy.

Cepeda-Pérez E, de Jonge N.

Micron. 2019 Feb;117:68-75. doi: 10.1016/j.micron.2018.11.006. Epub 2018 Nov 23.

PMID:
30504080
21.

Reduced Radiation Damage in Transmission Electron Microscopy of Proteins in Graphene Liquid Cells.

Keskin S, de Jonge N.

Nano Lett. 2018 Dec 12;18(12):7435-7440. doi: 10.1021/acs.nanolett.8b02490. Epub 2018 Nov 15.

PMID:
30431282
22.
23.

Linear Chains of HER2 Receptors Found in the Plasma Membrane Using Liquid-Phase Electron Microscopy.

Parker K, Trampert P, Tinnemann V, Peckys D, Dahmen T, de Jonge N.

Biophys J. 2018 Aug 7;115(3):503-513. doi: 10.1016/j.bpj.2018.06.016. Epub 2018 Jun 18.

24.

Advanced heart failure: a position statement of the Heart Failure Association of the European Society of Cardiology.

Crespo-Leiro MG, Metra M, Lund LH, Milicic D, Costanzo MR, Filippatos G, Gustafsson F, Tsui S, Barge-Caballero E, De Jonge N, Frigerio M, Hamdan R, Hasin T, Hülsmann M, Nalbantgil S, Potena L, Bauersachs J, Gkouziouta A, Ruhparwar A, Ristic AD, Straburzynska-Migaj E, McDonagh T, Seferovic P, Ruschitzka F.

Eur J Heart Fail. 2018 Nov;20(11):1505-1535. doi: 10.1002/ejhf.1236. Epub 2018 Jul 17. Review.

25.

Donor heart selection and outcomes: An analysis of over 2,000 cases.

Aliabadi-Zuckermann AZ, Gökler J, Kaider A, Riebandt J, Moayedifar R, Osorio E, Haberl T, Angleitner P, Laufer G, Forsythe J, Knezevic I, Skoric B, Erasmus M, van Cleemput J, Caliskan K, De Jonge N, Szabolcs Z, Prodán Z, Wasler A, Bara C, Udovičić M, Sandhaus T, Garbade J, Ruhparwar A, Schoenrath F, Hirt S, Antretter H, Schulz U, Richter M, Thul J, Barten MJ, Haneya A, Aleksic I, Eifert S, Berchtold-Herz M, Smits J, Zuckermann AO.

J Heart Lung Transplant. 2018 Aug;37(8):976-984. doi: 10.1016/j.healun.2018.04.014. Epub 2018 Apr 30.

PMID:
29802081
26.

Strategies for Preparing Graphene Liquid Cells for Transmission Electron Microscopy.

Textor M, de Jonge N.

Nano Lett. 2018 Jun 13;18(6):3313-3321. doi: 10.1021/acs.nanolett.8b01366. Epub 2018 May 25.

PMID:
29799208
27.

The diagnosis and treatment of invasive aspergillosis in Dutch haematology units facing a rapidly increasing prevalence of azole-resistance. A nationwide survey and rationale for the DB-MSG 002 study protocol.

Schauwvlieghe AFAD, de Jonge N, van Dijk K, Verweij PE, Brüggemann RJ, Biemond BJ, Bart A, von dem Borne PA, Verbon A, van der Beek MT, Demandt AMP, Oudhuis GJ, Cornelissen JJ, van der Velden WJFM, Span LFR, Kampinga GA, Bruns AH, Vonk AG, Haas PA, Doorduijn JK, Rijnders BJA.

Mycoses. 2018 Sep;61(9):656-664. doi: 10.1111/myc.12788. Epub 2018 Jul 13.

PMID:
29687483
28.

The Influence of Beam Broadening on the Spatial Resolution of Annular Dark Field Scanning Transmission Electron Microscopy.

de Jonge N, Verch A, Demers H.

Microsc Microanal. 2018 Feb;24(1):8-16. doi: 10.1017/S1431927618000077.

PMID:
29485023
29.

Theory of the spatial resolution of (scanning) transmission electron microscopy in liquid water or ice layers.

de Jonge N.

Ultramicroscopy. 2018 Apr;187:113-125. doi: 10.1016/j.ultramic.2018.01.007. Epub 2018 Feb 1. Erratum in: Ultramicroscopy. 2019 Jan;196:129-130.

PMID:
29428430
30.

Diversity and metabolic potential of the microbiota associated with a soil arthropod.

Bahrndorff S, de Jonge N, Hansen JK, Lauritzen JMS, Spanggaard LH, Sørensen MH, Yde M, Nielsen JL.

Sci Rep. 2018 Feb 6;8(1):2491. doi: 10.1038/s41598-018-20967-0.

31.

Extracorporeal life support in cardiogenic shock: indications and management in current practice.

Meuwese CL, Ramjankhan FZ, Braithwaite SA, de Jonge N, de Jong M, Buijsrogge MP, Janssen JGD, Klöpping C, Kirkels JH, Donker DW.

Neth Heart J. 2018 Feb;26(2):58-66. doi: 10.1007/s12471-018-1073-9. Review.

32.

Low-force spectroscopy on graphene membranes by scanning tunneling microscopy.

Uder B, Gao H, Kunnas P, de Jonge N, Hartmann U.

Nanoscale. 2018 Jan 25;10(4):2148-2153. doi: 10.1039/c7nr07300c.

PMID:
29327012
33.

Soluble ST2 in end-stage heart failure, before and after support with a left ventricular assist device.

Tseng CCS, Huibers MMH, Gaykema LH, Siera-de Koning E, Ramjankhan FZ, Maisel AS, de Jonge N.

Eur J Clin Invest. 2018 Mar;48(3). doi: 10.1111/eci.12886. Epub 2018 Feb 2.

34.

The Interleukin-33/ST2 Pathway Is Expressed in the Failing Human Heart and Associated with Pro-fibrotic Remodeling of the Myocardium.

Tseng CCS, Huibers MMH, van Kuik J, de Weger RA, Vink A, de Jonge N.

J Cardiovasc Transl Res. 2018 Feb;11(1):15-21. doi: 10.1007/s12265-017-9775-8. Epub 2017 Dec 28.

35.

Involvement of two uptake mechanisms of gold and iron oxide nanoparticles in a co-exposure scenario using mouse macrophages.

Vanhecke D, Kuhn DA, Jimenez de Aberasturi D, Balog S, Milosevic A, Urban D, Peckys D, de Jonge N, Parak WJ, Petri-Fink A, Rothen-Rutishauser B.

Beilstein J Nanotechnol. 2017 Nov 14;8:2396-2409. doi: 10.3762/bjnano.8.239. eCollection 2017.

36.

Strong responses of Drosophila melanogaster microbiota to developmental temperature.

Moghadam NN, Thorshauge PM, Kristensen TN, de Jonge N, Bahrndorff S, Kjeldal H, Nielsen JL.

Fly (Austin). 2018 Jan 2;12(1):1-12. doi: 10.1080/19336934.2017.1394558. Epub 2017 Dec 7.

37.

Graphene Liquid Enclosure for Single-Molecule Analysis of Membrane Proteins in Whole Cells Using Electron Microscopy.

Dahmke IN, Verch A, Hermannsdörfer J, Peckys DB, Weatherup RS, Hofmann S, de Jonge N.

ACS Nano. 2017 Nov 28;11(11):11108-11117. doi: 10.1021/acsnano.7b05258. Epub 2017 Oct 16.

PMID:
29023096
38.

Liquid-phase electron microscopy of molecular drug response in breast cancer cells reveals irresponsive cell subpopulations related to lack of HER2 homodimers.

Peckys DB, Korf U, Wiemann S, de Jonge N.

Mol Biol Cell. 2017 Aug 9. pii: mbc.E17-06-0381. doi: 10.1091/mbc.E17-06-0381. [Epub ahead of print]

39.

Tomo-Seq Identifies SOX9 as a Key Regulator of Cardiac Fibrosis During Ischemic Injury.

Lacraz GPA, Junker JP, Gladka MM, Molenaar B, Scholman KT, Vigil-Garcia M, Versteeg D, de Ruiter H, Vermunt MW, Creyghton MP, Huibers MMH, de Jonge N, van Oudenaarden A, van Rooij E.

Circulation. 2017 Oct 10;136(15):1396-1409. doi: 10.1161/CIRCULATIONAHA.117.027832. Epub 2017 Jul 19.

PMID:
28724751
40.

The stoichiometry of the TMEM16A ion channel determined in intact plasma membranes of COS-7 cells using liquid-phase electron microscopy.

Peckys DB, Stoerger C, Latta L, Wissenbach U, Flockerzi V, de Jonge N.

J Struct Biol. 2017 Aug;199(2):102-113. doi: 10.1016/j.jsb.2017.05.009. Epub 2017 May 27.

PMID:
28559167
41.

Membrane protein stoichiometry studied in intact mammalian cells using liquid-phase electron microscopy.

DE Jonge N.

J Microsc. 2018 Feb;269(2):134-142. doi: 10.1111/jmi.12570. Epub 2017 May 4.

PMID:
28470763
42.

The microbial community of the gut differs between piglets fed sow milk, milk replacer or bovine colostrum.

Poulsen AR, de Jonge N, Sugiharto S, Nielsen JL, Lauridsen C, Canibe N.

Br J Nutr. 2017 Apr;117(7):964-978. doi: 10.1017/S0007114517000216. Epub 2017 May 2.

PMID:
28460652
43.

Distinct fibrosis pattern in desmosomal and phospholamban mutation carriers in hereditary cardiomyopathies.

Sepehrkhouy S, Gho JMIH, van Es R, Harakalova M, de Jonge N, Dooijes D, van der Smagt JJ, Buijsrogge MP, Hauer RNW, Goldschmeding R, de Weger RA, Asselbergs FW, Vink A.

Heart Rhythm. 2017 Jul;14(7):1024-1032. doi: 10.1016/j.hrthm.2017.03.034. Epub 2017 Mar 30.

PMID:
28365402
44.

In-situ biogas upgrading with pulse H2 additions: The relevance of methanogen adaption and inorganic carbon level.

Agneessens LM, Ottosen LDM, Voigt NV, Nielsen JL, de Jonge N, Fischer CH, Kofoed MVW.

Bioresour Technol. 2017 Jun;233:256-263. doi: 10.1016/j.biortech.2017.02.016. Epub 2017 Feb 9.

PMID:
28285216
45.

Thirty years of heart transplantation at the University Medical Centre Utrecht.

Sammani A, Wind AM, Kirkels JH, Klöpping C, Buijsrogge MP, Ramjakhan FZ, Asselbergs FW, de Jonge N.

Neth Heart J. 2017 Sep;25(9):516-523. doi: 10.1007/s12471-017-0969-0.

46.

Microbial population dynamics in continuous anaerobic digester systems during start up, stable conditions and recovery after starvation.

de Jonge N, Moset V, Møller HB, Nielsen JL.

Bioresour Technol. 2017 May;232:313-320. doi: 10.1016/j.biortech.2017.02.036. Epub 2017 Feb 11.

PMID:
28242388
47.

Studying Dynamic Processes of Nano-sized Objects in Liquid using Scanning Transmission Electron Microscopy.

Hermannsdörfer J, de Jonge N.

J Vis Exp. 2017 Feb 5;(120). doi: 10.3791/54943.

48.

Bacterial Communities Associated with Houseflies (Musca domestica L.) Sampled within and between Farms.

Bahrndorff S, de Jonge N, Skovgård H, Nielsen JL.

PLoS One. 2017 Jan 12;12(1):e0169753. doi: 10.1371/journal.pone.0169753. eCollection 2017.

49.

Pathology of aortic valve remodeling after continuous-flow left ventricular assist device support.

van Rijswijk JW, Vink A, Martina JR, Ramjankhan FZ, Goldschmeding R, de Jonge N, Kluin J.

J Heart Lung Transplant. 2017 Jan;36(1):113-116. doi: 10.1016/j.healun.2016.11.002. Epub 2016 Nov 10. No abstract available.

PMID:
27932070
50.

Evaluation of a membrane bioreactor system as post-treatment in waste water treatment for better removal of micropollutants.

Arriaga S, de Jonge N, Nielsen ML, Andersen HR, Borregaard V, Jewel K, Ternes TA, Nielsen JL.

Water Res. 2016 Dec 15;107:37-46. doi: 10.1016/j.watres.2016.10.046. Epub 2016 Oct 19.

PMID:
27794216

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