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Items: 1 to 50 of 217

1.

Loss of Octarepeats in two processed prion pseudogenes in the red squirrel, Sciurus vulgaris.

Madsen O, Kortum TT, Hupkes M, Kohlen W, van Rheede T, de Jong WW.

J Mol Evol. 2010 Dec;71(5-6):356-63. doi: 10.1007/s00239-010-9390-7. Epub 2010 Sep 28.

2.

Why proteins without an alpha-crystallin domain should not be included in the human small heat shock protein family HSPB.

Kappé G, Boelens WC, de Jong WW.

Cell Stress Chaperones. 2010 Jul;15(4):457-61. doi: 10.1007/s12192-009-0155-4. Epub 2009 Nov 18.

3.

The small heat-shock proteins HSPB2 and HSPB3 form well-defined heterooligomers in a unique 3 to 1 subunit ratio.

den Engelsman J, Boros S, Dankers PY, Kamps B, Vree Egberts WT, Böde CS, Lane LA, Aquilina JA, Benesch JL, Robinson CV, de Jong WW, Boelens WC.

J Mol Biol. 2009 Nov 13;393(5):1022-32. doi: 10.1016/j.jmb.2009.08.052. Epub 2009 Aug 26.

PMID:
19715703
4.

Evolution of closely linked gene pairs in vertebrate genomes.

Franck E, Hulsen T, Huynen MA, de Jong WW, Lubsen NH, Madsen O.

Mol Biol Evol. 2008 Sep;25(9):1909-21. doi: 10.1093/molbev/msn136. Epub 2008 Jun 19.

PMID:
18566020
5.

Molecular phylogeny and divergence times of Malagasy tenrecs: influence of data partitioning and taxon sampling on dating analyses.

Poux C, Madsen O, Glos J, de Jong WW, Vences M.

BMC Evol Biol. 2008 Mar 31;8:102. doi: 10.1186/1471-2148-8-102.

6.

Tissue transglutaminase catalyzes the deamidation of glutamines in lens betaB(2)- and betaB(3)-crystallins.

Boros S, Wilmarth PA, Kamps B, de Jong WW, Bloemendal H, Lampi K, Boelens WC.

Exp Eye Res. 2008 Feb;86(2):383-93. doi: 10.1016/j.exer.2007.11.011. Epub 2007 Nov 29.

PMID:
18184610
7.

Molecules consolidate the placental mammal tree.

Springer MS, Stanhope MJ, Madsen O, de Jong WW.

Trends Ecol Evol. 2004 Aug;19(8):430-8.

PMID:
16701301
8.

Arrival and diversification of caviomorph rodents and platyrrhine primates in South America.

Poux C, Chevret P, Huchon D, de Jong WW, Douzery EJ.

Syst Biol. 2006 Apr;55(2):228-44.

PMID:
16551580
9.

The effect of alphaB-crystallin and Hsp27 on the availability of translation initiation factors in heat-shocked cells.

Doerwald L, van Genesen ST, Onnekink C, Marín-Vinader L, de Lange F, de Jong WW, Lubsen NH.

Cell Mol Life Sci. 2006 Mar;63(6):735-43.

PMID:
16505970
10.

Site-specific transamidation and deamidation of the small heat-shock protein Hsp20 by tissue transglutaminase.

Boros S, Ahrman E, Wunderink L, Kamps B, de Jong WW, Boelens WC, Emanuelsson CS.

Proteins. 2006 Mar 1;62(4):1044-52.

PMID:
16385579
11.

The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians.

van Rheede T, Bastiaans T, Boone DN, Hedges SB, de Jong WW, Madsen O.

Mol Biol Evol. 2006 Mar;23(3):587-97. Epub 2005 Nov 16.

PMID:
16291999
12.

Asynchronous colonization of Madagascar by the four endemic clades of primates, tenrecs, carnivores, and rodents as inferred from nuclear genes.

Poux C, Madsen O, Marquard E, Vieites DR, de Jong WW, Vences M.

Syst Biol. 2005 Oct;54(5):719-30.

PMID:
16243759
13.

Nuclear import of {alpha}B-crystallin is phosphorylation-dependent and hampered by hyperphosphorylation of the myopathy-related mutant R120G.

den Engelsman J, Gerrits D, de Jong WW, Robbins J, Kato K, Boelens WC.

J Biol Chem. 2005 Nov 4;280(44):37139-48. Epub 2005 Aug 28.

14.

Sequence and functional conservation of the intergenic region between the head-to-head genes encoding the small heat shock proteins alphaB-crystallin and HspB2 in the mammalian lineage.

Doerwald L, van Rheede T, Dirks RP, Madsen O, Rexwinkel R, van Genesen ST, Martens GJ, de Jong WW, Lubsen NH.

J Mol Evol. 2004 Nov;59(5):674-86.

PMID:
15693623
15.

Evolutionary diversity of vertebrate small heat shock proteins.

Franck E, Madsen O, van Rheede T, Ricard G, Huynen MA, de Jong WW.

J Mol Evol. 2004 Dec;59(6):792-805.

PMID:
15599511
16.

Mimicking phosphorylation of the small heat-shock protein alphaB-crystallin recruits the F-box protein FBX4 to nuclear SC35 speckles.

den Engelsman J, Bennink EJ, Doerwald L, Onnekink C, Wunderink L, Andley UP, Kato K, de Jong WW, Boelens WC.

Eur J Biochem. 2004 Nov;271(21):4195-203.

17.

Testis-specific human small heat shock protein HSPB9 is a cancer/testis antigen, and potentially interacts with the dynein subunit TCTEL1.

de Wit NJ, Verschuure P, Kappé G, King SM, de Jong WW, van Muijen GN, Boelens WC.

Eur J Cell Biol. 2004 Aug;83(7):337-45.

PMID:
15503857
18.

Transglutaminase catalyzes differential crosslinking of small heat shock proteins and amyloid-beta.

Boros S, Kamps B, Wunderink L, de Bruijn W, de Jong WW, Boelens WC.

FEBS Lett. 2004 Oct 8;576(1-2):57-62.

19.

Tsp36, a tapeworm small heat-shock protein with a duplicated alpha-crystallin domain, forms dimers and tetramers with good chaperone-like activity.

Kappé G, Aquilina JA, Wunderink L, Kamps B, Robinson CV, Garate T, Boelens WC, de Jong WW.

Proteins. 2004 Oct 1;57(1):109-17.

PMID:
15326597
20.

The use of composite taxa in supermatrices.

Springer MS, Scally M, Madsen O, de Jong WW, Douady CJ, Stanhope MJ.

Mol Phylogenet Evol. 2004 Mar;30(3):883-4. No abstract available.

PMID:
15012970
21.

Influence of hormones and growth factors on lens protein composition: the effect of dexamethasone and PDGF-AA.

Vinader LM, van Genesen ST, de Jong WW, Lubsen NH.

Mol Vis. 2003 Dec 18;9:723-9.

22.

Translational thermotolerance provided by small heat shock proteins is limited to cap-dependent initiation and inhibited by 2-aminopurine.

Doerwald L, Onnekink C, van Genesen ST, de Jong WW, Lubsen NH.

J Biol Chem. 2003 Dec 12;278(50):49743-50. Epub 2003 Sep 30.

23.

Indels in protein-coding sequences of Euarchontoglires constrain the rooting of the eutherian tree.

de Jong WW, van Dijk MA, Poux C, Kappé G, van Rheede T, Madsen O.

Mol Phylogenet Evol. 2003 Aug;28(2):328-40.

PMID:
12878469
24.

The human genome encodes 10 alpha-crystallin-related small heat shock proteins: HspB1-10.

Kappé G, Franck E, Verschuure P, Boelens WC, Leunissen JA, de Jong WW.

Cell Stress Chaperones. 2003 Spring;8(1):53-61.

25.

Lactate dehydrogenase A as a highly abundant eye lens protein in platypus (Ornithorhynchus anatinus): upsilon (upsilon)-crystallin.

van Rheede T, Amons R, Stewart N, de Jong WW.

Mol Biol Evol. 2003 Jun;20(6):994-8. Epub 2003 Apr 25.

PMID:
12716980
26.

Molecular evolution of the mammalian prion protein.

van Rheede T, Smolenaars MM, Madsen O, de Jong WW.

Mol Biol Evol. 2003 Jan;20(1):111-21.

PMID:
12519913
27.

The small heat-shock protein alpha B-crystallin promotes FBX4-dependent ubiquitination.

den Engelsman J, Keijsers V, de Jong WW, Boelens WC.

J Biol Chem. 2003 Feb 14;278(7):4699-704. Epub 2002 Dec 4.

28.

Molecular evolution of the mammalian alpha 2B adrenergic receptor.

Madsen O, Willemsen D, Ursing BM, Arnason U, de Jong WW.

Mol Biol Evol. 2002 Dec;19(12):2150-60.

PMID:
12446807
29.

Differential effect of simvastatin on activation of Rac(1) vs. activation of the heat shock protein 27-mediated pathway upon oxidative stress, in human smooth muscle cells.

Nègre-Aminou P, van Leeuwen RE, van Thiel GC, van den IJssel P, de Jong WW, Quinlan RA, Cohen LH.

Biochem Pharmacol. 2002 Nov 15;64(10):1483-91.

PMID:
12417261
30.

Sequence gaps join mice and men: phylogenetic evidence from deletions in two proteins.

Poux C, van Rheede T, Madsen O, de Jong WW.

Mol Biol Evol. 2002 Nov;19(11):2035-7. No abstract available.

PMID:
12411613
31.

Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews.

Douady CJ, Chatelier PI, Madsen O, de Jong WW, Catzeflis F, Springer MS, Stanhope MJ.

Mol Phylogenet Evol. 2002 Oct;25(1):200-9.

PMID:
12383761
32.

Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting.

Delsuc F, Scally M, Madsen O, Stanhope MJ, de Jong WW, Catzeflis FM, Springer MS, Douzery EJ.

Mol Biol Evol. 2002 Oct;19(10):1656-71.

33.

Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes.

Huchon D, Madsen O, Sibbald MJ, Ament K, Stanhope MJ, Catzeflis F, de Jong WW, Douzery EJ.

Mol Biol Evol. 2002 Jul;19(7):1053-65.

PMID:
12082125
34.

The virtues of gaps: xenarthran (Edentate) monophyly supported by a unique deletion in alpha A-crystallin.

Van Dijk MA, Paradis E, Catzeflis F, de Jong WW.

Syst Biol. 1999 Mar;48(1):94-106.

PMID:
12078648
35.

The eye lens protein alphaA-crystallin of the blind mole rat Spalax ehrenbergi: effects of altered functional constraints.

Smulders RH, van Dijk MA, Hoevenaars S, Lindner RA, Carver JA, de Jong WW.

Exp Eye Res. 2002 Feb;74(2):285-91.

PMID:
11950238
36.

Evolution and diversity of prokaryotic small heat shock proteins.

Kappé G, Leunissen JA, de Jong WW.

Prog Mol Subcell Biol. 2002;28:1-17. Review. No abstract available.

PMID:
11908054
37.

Translocation of small heat shock proteins to the actin cytoskeleton upon proteasomal inhibition.

Verschuure P, Croes Y, van den IJssel PR, Quinlan RA, de Jong WW, Boelens WC.

J Mol Cell Cardiol. 2002 Feb;34(2):117-28.

PMID:
11851352
38.
39.

Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats.

Teeling EC, Madsen O, Van den Bussche RA, de Jong WW, Stanhope MJ, Springer MS.

Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1431-6. Epub 2002 Jan 22.

40.

Resolution of the early placental mammal radiation using Bayesian phylogenetics.

Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS.

Science. 2001 Dec 14;294(5550):2348-51.

41.

Characterization of two novel human small heat shock proteins: protein kinase-related HspB8 and testis-specific HspB9.

Kappé G, Verschuure P, Philipsen RL, Staalduinen AA, Van de Boogaart P, Boelens WC, De Jong WW.

Biochim Biophys Acta. 2001 Jul 30;1520(1):1-6.

PMID:
11470154
42.

The evolution of an alternatively spliced exon in the alphaA-crystallin gene.

van Dijk MA, Sweers MA, de Jong WW.

J Mol Evol. 2001 Jun;52(6):510-5.

PMID:
11443354
43.

Evolution of the aldose reductase-related gecko eye lens protein rhoB-crystallin: a sheep in wolf's clothing.

van Boekel MA, van Aalten DM, Caspers GJ, Röll B, de Jong WW.

J Mol Evol. 2001 Mar;52(3):239-48.

PMID:
11428461
44.

Integrated fossil and molecular data reconstruct bat echolocation.

Springer MS, Teeling EC, Madsen O, Stanhope MJ, de Jong WW.

Proc Natl Acad Sci U S A. 2001 May 22;98(11):6241-6. Epub 2001 May 15.

45.

Interaction between alphaB-crystallin and the human 20S proteasomal subunit C8/alpha7.

Boelens WC, Croes Y, de Jong WW.

Biochim Biophys Acta. 2001 Jan 12;1544(1-2):311-9.

PMID:
11341940
46.

Phylogenetics. Which mammalian supertree to bark up?

Springer MS, de Jong WW.

Science. 2001 Mar 2;291(5509):1709-11. No abstract available.

PMID:
11253193
47.

Parallel adaptive radiations in two major clades of placental mammals.

Madsen O, Scally M, Douady CJ, Kao DJ, DeBry RW, Adkins R, Amrine HM, Stanhope MJ, de Jong WW, Springer MS.

Nature. 2001 Feb 1;409(6820):610-4.

PMID:
11214318
48.

Chaperone function of mutant versions of alpha A- and alpha B-crystallin prepared to pinpoint chaperone binding sites.

Derham BK, van Boekel MA, Muchowski PJ, Clark JI, Horwitz J, Hepburne-Scott HW, de Jong WW, Crabbe MJ, Harding JJ.

Eur J Biochem. 2001 Feb;268(3):713-21.

49.

Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction.

Springer MS, DeBry RW, Douady C, Amrine HM, Madsen O, de Jong WW, Stanhope MJ.

Mol Biol Evol. 2001 Feb;18(2):132-43.

PMID:
11158372
50.

Protein sequence signatures support the African clade of mammals.

van Dijk MA, Madsen O, Catzeflis F, Stanhope MJ, de Jong WW, Pagel M.

Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):188-93.

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