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Items: 28

1.

Telacebec (Q203), a New Antituberculosis Agent.

de Jager VR, Dawson R, van Niekerk C, Hutchings J, Kim J, Vanker N, van der Merwe L, Choi J, Nam K, Diacon AH.

N Engl J Med. 2020 Mar 26;382(13):1280-1281. doi: 10.1056/NEJMc1913327. No abstract available.

PMID:
32212527
2.

Fourteen-Day Bactericidal Activity, Safety, and Pharmacokinetics of Linezolid in Adults with Drug-Sensitive Pulmonary Tuberculosis.

Diacon AH, De Jager VR, Dawson R, Narunsky K, Vanker N, Burger DA, Everitt D, Pappas F, Nedelman J, Mendel CM.

Antimicrob Agents Chemother. 2020 Mar 24;64(4). pii: e02012-19. doi: 10.1128/AAC.02012-19. Print 2020 Mar 24.

3.

Optimising β-lactams Against Tuberculosis.

de Jager VR, Vanker N, van der Merwe L, van Brakel E, Muliaditan M, Diacon AH.

Am J Respir Crit Care Med. 2020 Jan 10. doi: 10.1164/rccm.201911-2149LE. [Epub ahead of print] No abstract available.

PMID:
31922901
4.

Metabolic Resuscitation Strategies to Prevent Organ Dysfunction in Sepsis.

Reitsema VA, Star BS, de Jager VD, van Meurs M, Henning RH, Bouma HR.

Antioxid Redox Signal. 2019 Jul 10;31(2):134-152. doi: 10.1089/ars.2018.7537. Epub 2019 Jan 23.

PMID:
30403161
5.

Relative bioavailability of bedaquiline tablets suspended in water: Implications for dosing in children.

Svensson EM, du Bois J, Kitshoff R, de Jager VR, Wiesner L, Norman J, Nachman S, Smith B, Diacon AH, Hesseling AC, Garcia-Prats AJ.

Br J Clin Pharmacol. 2018 Jun 27. doi: 10.1111/bcp.13696. [Epub ahead of print]

6.

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils.

Carrión VJ, Cordovez V, Tyc O, Etalo DW, de Bruijn I, de Jager VCL, Medema MH, Eberl L, Raaijmakers JM.

ISME J. 2018 Sep;12(9):2307-2321. doi: 10.1038/s41396-018-0186-x. Epub 2018 Jun 13.

7.

Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum.

Schmidt R, Durling MB, de Jager V, Menezes RC, Nordkvist E, Svatoš A, Dubey M, Lauterbach L, Dickschat JS, Karlsson M, Garbeva P.

FEMS Microbiol Ecol. 2018 Jun 1;94(6). doi: 10.1093/femsec/fiy078.

PMID:
29718180
8.

Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds.

Tyc O, de Jager VCL, van den Berg M, Gerards S, Janssens TKS, Zaagman N, Kai M, Svatos A, Zweers H, Hordijk C, Besselink H, de Boer W, Garbeva P.

Microb Biotechnol. 2017 Jul;10(4):910-925. doi: 10.1111/1751-7915.12735. Epub 2017 May 29.

9.

Spatial identification of critical nutrient loads of large shallow lakes: Implications for Lake Taihu (China).

Janssen ABG, de Jager VCL, Janse JH, Kong X, Liu S, Ye Q, Mooij WM.

Water Res. 2017 Aug 1;119:276-287. doi: 10.1016/j.watres.2017.04.045. Epub 2017 Apr 19.

10.

Time Trends in Sputum Mycobacterial Load and Two-Day Bactericidal Activity of Isoniazid-Containing Antituberculosis Therapies.

De Jager V, van der Merwe L, Venter A, Donald PR, Diacon AH.

Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e02088-16. doi: 10.1128/AAC.02088-16. Print 2017 Apr.

11.

Recent and dynamic transposable elements contribute to genomic divergence under asexuality.

Ferreira de Carvalho J, de Jager V, van Gurp TP, Wagemaker NC, Verhoeven KJ.

BMC Genomics. 2016 Nov 7;17(1):884.

12.

Use of propidium monoazide for selective profiling of viable microbial cells during Gouda cheese ripening.

Erkus O, de Jager VC, Geene RT, van Alen-Boerrigter I, Hazelwood L, van Hijum SA, Kleerebezem M, Smid EJ.

Int J Food Microbiol. 2016 Jul 2;228:1-9. doi: 10.1016/j.ijfoodmicro.2016.03.027. Epub 2016 Mar 25.

PMID:
27077825
13.

Evolutionary signals of selection on cognition from the great tit genome and methylome.

Laine VN, Gossmann TI, Schachtschneider KM, Garroway CJ, Madsen O, Verhoeven KJ, de Jager V, Megens HJ, Warren WC, Minx P, Crooijmans RP, Corcoran P; Great Tit HapMap Consortium, Sheldon BC, Slate J, Zeng K, van Oers K, Visser ME, Groenen MA.

Nat Commun. 2016 Jan 25;7:10474. doi: 10.1038/ncomms10474.

14.

Microbial Small Talk: Volatiles in Fungal-Bacterial Interactions.

Schmidt R, Etalo DW, de Jager V, Gerards S, Zweers H, de Boer W, Garbeva P.

Front Microbiol. 2016 Jan 5;6:1495. doi: 10.3389/fmicb.2015.01495. eCollection 2015.

15.

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas.

Song C, Schmidt R, de Jager V, Krzyzanowska D, Jongedijk E, Cankar K, Beekwilder J, van Veen A, de Boer W, van Veen JA, Garbeva P.

BMC Genomics. 2015 Dec 24;16:1103. doi: 10.1186/s12864-015-2289-3.

16.

Comparative genomics and metabolic profiling of the genus Lysobacter.

de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM.

BMC Genomics. 2015 Nov 23;16:991. doi: 10.1186/s12864-015-2191-z.

17.

The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.

Czajkowski R, Ozymko Z, Siwinska J, Ossowicki A, de Jager V, Narajczyk M, Łojkowska E.

Stand Genomic Sci. 2015 Sep 24;10:68. doi: 10.1186/s40793-015-0068-z. eCollection 2015.

18.

Genomic, proteomic and morphological characterization of two novel broad host lytic bacteriophages ΦPD10.3 and ΦPD23.1 infecting pectinolytic Pectobacterium spp. and Dickeya spp.

Czajkowski R, Ozymko Z, de Jager V, Siwinska J, Smolarska A, Ossowicki A, Narajczyk M, Lojkowska E.

PLoS One. 2015 Mar 24;10(3):e0119812. doi: 10.1371/journal.pone.0119812. eCollection 2015.

19.

Finished Genome Sequence of Collimonas arenae Cal35.

Wu JJ, de Jager VC, Deng WL, Leveau JH.

Genome Announc. 2015 Jan 8;3(1). pii: e01408-14. doi: 10.1128/genomeA.01408-14.

20.

AIDS-related mycoses: the way forward.

Brown GD, Meintjes G, Kolls JK, Gray C, Horsnell W; Working Group from the EMBO-AIDS Related Mycoses Workshop, Achan B, Alber G, Aloisi M, Armstrong-James D, Beale M, Bicanic T, Black J, Bohjanen P, Botes A, Boulware DR, Brown G, Bunjun R, Carr W, Casadevall A, Chang C, Chivero E, Corcoran C, Cross A, Dawood H, Day J, De Bernardis F, De Jager V, De Repentigny L, Denning D, Eschke M, Finkelman M, Govender N, Gow N, Graham L, Gryschek R, Hammond-Aryee K, Harrison T, Heard N, Hill M, Hoving JC, Janoff E, Jarvis J, Kayuni S, King K, Kolls J, Kullberg BJ, Lalloo DG, Letang E, Levitz S, Limper A, Longley N, Machiridza TR, Mahabeer Y, Martinsons N, Meiring S, Meya D, Miller R, Molloy S, Morris L, Mukaremera L, Musubire AK, Muzoora C, Nair A, Nakiwala Kimbowa J, Netea M, Nielsen K, O'hern J, Okurut S, Parker A, Patterson T, Pennap G, Perfect J, Prinsloo C, Rhein J, Rolfes MA, Samuel C, Schutz C, Scriven J, Sebolai OM, Sojane K, Sriruttan C, Stead D, Steyn A, Thawer NK, Thienemann F, Von Hohenberg M, Vreulink JM, Wessels J, Wood K, Yang YL.

Trends Microbiol. 2014 Mar;22(3):107-9. doi: 10.1016/j.tim.2013.12.008.

21.

Multifactorial diversity sustains microbial community stability.

Erkus O, de Jager VC, Spus M, van Alen-Boerrigter IJ, van Rijswijck IM, Hazelwood L, Janssen PW, van Hijum SA, Kleerebezem M, Smid EJ.

ISME J. 2013 Nov;7(11):2126-36. doi: 10.1038/ismej.2013.108. Epub 2013 Jul 4.

22.

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data.

Bryant JM, Schürch AC, van Deutekom H, Harris SR, de Beer JL, de Jager V, Kremer K, van Hijum SA, Siezen RJ, Borgdorff M, Bentley SD, Parkhill J, van Soolingen D.

BMC Infect Dis. 2013 Feb 27;13:110. doi: 10.1186/1471-2334-13-110.

23.

Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage.

Ainsworth S, Zomer A, de Jager V, Bottacini F, van Hijum SA, Mahony J, van Sinderen D.

Genome Announc. 2013 Jan;1(1). pii: e00119-12. doi: 10.1128/genomeA.00119-12. Epub 2013 Jan 31.

24.

Single-cell genomics: unravelling the genomes of unculturable microorganisms.

de Jager V, Siezen RJ.

Microb Biotechnol. 2011 Jul;4(4):431-7. doi: 10.1111/j.1751-7915.2011.00271.x. No abstract available.

25.

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.

26.

The molecular signature of oxidative metabolism and the mode of macrophage activation determine the shift from acute to chronic disease in experimental arthritis: critical role of interleukin-12p40.

Takahashi N, de Jager VC, Glück A, Letzkus M, Hartmann N, Staedtler F, Ribeiro-Dias F, Heuvelmans-Jacobs M, van den Berg WB, Joosten LA.

Arthritis Rheum. 2008 Nov;58(11):3471-84. doi: 10.1002/art.23956.

27.

TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes.

Horsman S, Moorhouse MJ, de Jager VC, van der Spek P, Grosveld F, Strouboulis J, Katsantoni EZ.

BMC Bioinformatics. 2006 Mar 8;7:120.

28.

Storing, linking, and mining microarray databases using SRS.

Veldhoven A, de Lange D, Smid M, de Jager V, Kors JA, Jenster G.

BMC Bioinformatics. 2005 Jul 27;6:192.

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