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Items: 29

1.

A sequential nanopore-channel device for polymer separation.

Magill M, Waller E, de Haan HW.

J Chem Phys. 2018 Nov 7;149(17):174903. doi: 10.1063/1.5037449.

PMID:
30408994
2.

Morphology of depletant-induced erythrocyte aggregates.

Nehring A, Shendruk TN, de Haan HW.

Soft Matter. 2018 Oct 17;14(40):8160-8171. doi: 10.1039/c8sm01026a.

PMID:
30260361
3.

Reducing the variance in the translocation times by prestretching the polymer.

de Haan HW, Sean D, Slater GW.

Phys Rev E. 2018 Aug;98(2-1):022501. doi: 10.1103/PhysRevE.98.022501.

PMID:
30253469
4.

Molecular Characterization of Binding Loop E in the Nematode Cys-Loop GABA Receptor.

Kwaka A, Hassan Khatami M, Foster J, Cochrane E, Habibi SA, de Haan HW, Forrester SG.

Mol Pharmacol. 2018 Nov;94(5):1289-1297. doi: 10.1124/mol.118.112821. Epub 2018 Sep 7.

PMID:
30194106
5.

Buckling Causes Nonlinear Dynamics of Filamentous Viruses Driven through Nanopores.

McMullen A, de Haan HW, Tang JX, Stein D.

Phys Rev Lett. 2018 Feb 16;120(7):078101. doi: 10.1103/PhysRevLett.120.078101.

PMID:
29542945
6.

DNA Translocations through Nanopores under Nanoscale Preconfinement.

Briggs K, Madejski G, Magill M, Kastritis K, de Haan HW, McGrath JL, Tabard-Cossa V.

Nano Lett. 2018 Feb 14;18(2):660-668. doi: 10.1021/acs.nanolett.7b03987. Epub 2017 Dec 6.

7.

Sorting polymers by size via an array of viscous posts.

VandeSande MC, Pasut DJ, de Haan HW.

Electrophoresis. 2017 Oct;38(19):2488-2497. doi: 10.1002/elps.201700136.

PMID:
28975695
8.

Translocation Time through a Nanopore with an Internal Cavity Is Minimal for Polymers of Intermediate Length.

Magill M, Falconer C, Waller E, de Haan HW.

Phys Rev Lett. 2016 Dec 9;117(24):247802. doi: 10.1103/PhysRevLett.117.247802. Epub 2016 Dec 7.

PMID:
28009178
9.

Modeling and Simulating the Dynamics of Type IV Pili Extension of Pseudomonas aeruginosa.

de Haan HW.

Biophys J. 2016 Nov 15;111(10):2263-2273. doi: 10.1016/j.bpj.2016.09.050.

10.

Waves of DNA: Propagating excitations in extended nanoconfined polymers.

Klotz AR, de Haan HW, Reisner WW.

Phys Rev E. 2016 Oct;94(4-1):042603. Epub 2016 Oct 17.

PMID:
27841510
11.
12.

Using a Péclet number for the translocation of a polymer through a nanopore to tune coarse-grained simulations to experimental conditions.

de Haan HW, Sean D, Slater GW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Feb;91(2):022601. Epub 2015 Feb 12.

PMID:
25768522
13.

Simulating the entropic collapse of coarse-grained chromosomes.

Shendruk TN, Bertrand M, de Haan HW, Harden JL, Slater GW.

Biophys J. 2015 Feb 17;108(4):810-820. doi: 10.1016/j.bpj.2014.11.3487.

14.

Coarse-grained molecular dynamics simulations of depletion-induced interactions for soft matter systems.

Shendruk TN, Bertrand M, Harden JL, Slater GW, de Haan HW.

J Chem Phys. 2014 Dec 28;141(24):244910. doi: 10.1063/1.4903992.

PMID:
25554183
15.

Translocation of a polymer through a nanopore starting from a confining nanotube.

Sean D, de Haan HW, Slater GW.

Electrophoresis. 2015 Mar;36(5):682-91. doi: 10.1002/elps.201400418. Epub 2015 Feb 2.

PMID:
25461428
16.

Biomolecule transport across biomembranes in the presence of crowding: polymer translocation driven by concentration and disorder gradients.

de Haan HW, Slater GW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):020601. Epub 2014 Aug 29.

PMID:
25215678
17.

Stiff filamentous virus translocations through solid-state nanopores.

McMullen A, de Haan HW, Tang JX, Stein D.

Nat Commun. 2014 Jun 16;5:4171. doi: 10.1038/ncomms5171.

PMID:
24932700
18.

Translocation of a polymer through a nanopore across a viscosity gradient.

de Haan HW, Slater GW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Apr;87(4):042604. Epub 2013 Apr 12.

PMID:
23679440
19.

Translocation of a polymer through a nanopore modulated by a sticky site.

de Haan HW, Slater GW.

J Chem Phys. 2013 Mar 7;138(9):094906. doi: 10.1063/1.4792934.

PMID:
23485325
20.

Translocation of "rod-coil" polymers: probing the structure of single molecules within nanopores.

de Haan HW, Slater GW.

Phys Rev Lett. 2013 Jan 25;110(4):048101. Epub 2013 Jan 23.

PMID:
25166202
21.
22.

Memory effects during the unbiased translocation of a polymer through a nanopore.

de Haan HW, Slater GW.

J Chem Phys. 2012 Apr 21;136(15):154903. doi: 10.1063/1.3699979.

PMID:
22519346
23.

Enhancement and degradation of the R2* relaxation rate resulting from the encapsulation of magnetic particles with hydrophilic coatings.

de Haan HW, Paquet C.

Magn Reson Med. 2011 Dec;66(6):1759-66. doi: 10.1002/mrm.22944. Epub 2011 Jun 24.

24.

Mechanisms of proton spin dephasing in a system of magnetic particles.

de Haan HW.

Magn Reson Med. 2011 Dec;66(6):1748-58. doi: 10.1002/mrm.22966. Epub 2011 May 19.

25.

An incremental mean first passage analysis for a quasistatic model of polymer translocation through a nanopore.

de Haan HW, Slater GW.

J Chem Phys. 2011 Apr 21;134(15):154905. doi: 10.1063/1.3580769.

PMID:
21513416
26.

Clusters of superparamagnetic iron oxide nanoparticles encapsulated in a hydrogel: a particle architecture generating a synergistic enhancement of the T2 relaxation.

Paquet C, de Haan HW, Leek DM, Lin HY, Xiang B, Tian G, Kell A, Simard B.

ACS Nano. 2011 Apr 26;5(4):3104-12. doi: 10.1021/nn2002272. Epub 2011 Apr 1.

PMID:
21428441
27.

Mapping the variation of the translocation α scaling exponent with nanopore width.

de Haan HW, Slater GW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051802. Epub 2010 May 14.

PMID:
20866254
28.

Modeling the separation of macromolecules: a review of current computer simulation methods.

Slater GW, Holm C, Chubynsky MV, de Haan HW, Dubé A, Grass K, Hickey OA, Kingsburry C, Sean D, Shendruk TN, Zhan L.

Electrophoresis. 2009 Mar;30(5):792-818. doi: 10.1002/elps.200800673. Review.

PMID:
19260004
29.

Nonequilibrium molecular dynamics calculation of the conductance of the KcsA potassium ion channel.

de Haan HW, Tolokh IS, Gray CG, Goldman S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep;74(3 Pt 1):030905. Epub 2006 Sep 26.

PMID:
17025587

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