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Items: 1 to 50 of 53

1.

Optimizing Small World Initiative service-learning by focusing on antibiotics-producing actinomycetes from soil.

de Groot PWJ, Fernández-Pereira J, Sabariegos R, Clemente-Casares P, Parra-Martínez J, Cid VJ, Moreno DA.

FEMS Microbiol Lett. 2020 Jan 29. pii: fnaa019. doi: 10.1093/femsle/fnaa019. [Epub ahead of print]

PMID:
31995181
2.

Deletion of GLX3 in Candida albicans affects temperature tolerance, biofilm formation and virulence.

Cabello L, Gómez-Herreros E, Fernández-Pereira J, Maicas S, Martínez-Esparza MC, de Groot PWJ, Valentín E.

FEMS Yeast Res. 2019 Mar 1;19(2). doi: 10.1093/femsyr/foy124.

PMID:
30476034
3.

Molecular identification of Candida auris by PCR amplification of species-specific GPI protein-encoding genes.

Ruiz-Gaitán AC, Fernández-Pereira J, Valentin E, Tormo-Mas MA, Eraso E, Pemán J, de Groot PWJ.

Int J Med Microbiol. 2018 Oct;308(7):812-818. doi: 10.1016/j.ijmm.2018.06.014. Epub 2018 Jul 8.

PMID:
30025998
4.

Proteomic analysis of hyperadhesive Candida glabrata clinical isolates reveals a core wall proteome and differential incorporation of adhesins.

Gómez-Molero E, de Boer AD, Dekker HL, Moreno-Martínez A, Kraneveld EA, Ichsan, Chauhan N, Weig M, de Soet JJ, de Koster CG, Bader O, de Groot PW.

FEMS Yeast Res. 2015 Dec;15(8). pii: fov098. doi: 10.1093/femsyr/fov098. Epub 2015 Nov 5.

PMID:
26546455
5.

Identification of Secreted Candida Proteins Using Mass Spectrometry.

Gómez-Molero E, Dekker HL, de Boer AD, de Groot PW.

Methods Mol Biol. 2016;1356:79-94. doi: 10.1007/978-1-4939-3052-4_7.

PMID:
26519067
6.

Rasagiline meta-analysis: a spotlight on clinical safety and adverse events when treating Parkinson's disease.

Solís-García del Pozo J, Mínguez-Mínguez S, de Groot PW, Jordán J.

Expert Opin Drug Saf. 2013 Jul;12(4):479-86. doi: 10.1517/14740338.2013.790956. Epub 2013 May 2.

PMID:
23634791
7.

Adhesins in human fungal pathogens: glue with plenty of stick.

de Groot PW, Bader O, de Boer AD, Weig M, Chauhan N.

Eukaryot Cell. 2013 Apr;12(4):470-81. doi: 10.1128/EC.00364-12. Epub 2013 Feb 8. Review.

8.

Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.

Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, Stajich JE, Mieczkowski P, Kahmann R, Kennell JC, Cardenas ME, Lundeberg J, Saunders CW, Boekhout T, Dawson TL, Munro CA, de Groot PW, Butler G, Heitman J, Scheynius A.

mBio. 2013 Jan 22;4(1):e00572-12. doi: 10.1128/mBio.00572-12.

9.

Gross karyotypic and phenotypic alterations among different progenies of the Candida glabrata CBS138/ATCC2001 reference strain.

Bader O, Schwarz A, Kraneveld EA, Tangwattanachuleeporn M, Schmidt P, Jacobsen MD, Gross U, De Groot PW, Weig M.

PLoS One. 2012;7(12):e52218. doi: 10.1371/journal.pone.0052218. Epub 2012 Dec 20. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/b929fe83-8e7f-4e8a-986e-9a3e26d86c54. Tangwattanchuleeporn, Marut [corrected to Tangwattanachuleeporn, Marut].

10.

Glycosylation of Candida albicans cell wall proteins is critical for induction of innate immune responses and apoptosis of epithelial cells.

Wagener J, Weindl G, de Groot PW, de Boer AD, Kaesler S, Thavaraj S, Bader O, Mailänder-Sanchez D, Borelli C, Weig M, Biedermann T, Naglik JR, Korting HC, Schaller M.

PLoS One. 2012;7(11):e50518. doi: 10.1371/journal.pone.0050518. Epub 2012 Nov 30.

11.

Minocycline mediated mitochondrial cytoprotection: premises for therapy of cerebrovascular and neurodegenerative diseases.

Karachitos A, García Del Pozo JS, de Groot PW, Kmita H, Jordán J.

Curr Drug Targets. 2013 Jan 1;14(1):47-55. Review.

PMID:
23170796
12.

The plant defensin RsAFP2 induces cell wall stress, septin mislocalization and accumulation of ceramides in Candida albicans.

Thevissen K, de Mello Tavares P, Xu D, Blankenship J, Vandenbosch D, Idkowiak-Baldys J, Govaert G, Bink A, Rozental S, de Groot PW, Davis TR, Kumamoto CA, Vargas G, Nimrichter L, Coenye T, Mitchell A, Roemer T, Hannun YA, Cammue BP.

Mol Microbiol. 2012 Apr;84(1):166-80. doi: 10.1111/j.1365-2958.2012.08017.x. Epub 2012 Mar 5.

13.

Pga13 in Candida albicans is localized in the cell wall and influences cell surface properties, morphogenesis and virulence.

Gelis S, de Groot PW, Castillo L, Moragues MD, Sentandreu R, Gómez MM, Valentín E.

Fungal Genet Biol. 2012 Apr;49(4):322-31. doi: 10.1016/j.fgb.2012.01.010. Epub 2012 Feb 8.

PMID:
22343036
14.

ProFASTA: a pipeline web server for fungal protein scanning with integration of cell surface prediction software.

de Groot PW, Brandt BW.

Fungal Genet Biol. 2012 Feb;49(2):173-9. doi: 10.1016/j.fgb.2011.12.009. Epub 2012 Jan 3.

PMID:
22230096
15.

Preparation and characterization of the foam-stabilizing properties of cellulose-ethyl cellulose complexes for use in foods.

Murray BS, Durga K, de Groot PW, Kakoulli A, Stoyanov SD.

J Agric Food Chem. 2011 Dec 28;59(24):13277-88. doi: 10.1021/jf203501p. Epub 2011 Dec 6.

PMID:
22103658
16.

Identification and differential gene expression of adhesin-like wall proteins in Candida glabrata biofilms.

Kraneveld EA, de Soet JJ, Deng DM, Dekker HL, de Koster CG, Klis FM, Crielaard W, de Groot PW.

Mycopathologia. 2011 Dec;172(6):415-27. doi: 10.1007/s11046-011-9446-2. Epub 2011 Jul 17.

PMID:
21769633
17.

Mitochondria: the headquarters in ischemia-induced neuronal death.

Jordan J, de Groot PW, Galindo MF.

Cent Nerv Syst Agents Med Chem. 2011 Jun 1;11(2):98-106. Review.

PMID:
21521170
18.

Pga26 mediates filamentation and biofilm formation and is required for virulence in Candida albicans.

Laforet L, Moreno I, Sánchez-Fresneda R, Martínez-Esparza M, Martínez JP, Argüelles JC, de Groot PW, Valentín-Gomez E.

FEMS Yeast Res. 2011 Aug;11(5):389-97. doi: 10.1111/j.1567-1364.2011.00727.x. Epub 2011 Apr 14.

19.

Proteolytic cleavage of covalently linked cell wall proteins by Candida albicans Sap9 and Sap10.

Schild L, Heyken A, de Groot PW, Hiller E, Mock M, de Koster C, Horn U, Rupp S, Hube B.

Eukaryot Cell. 2011 Jan;10(1):98-109. doi: 10.1128/EC.00210-10. Epub 2010 Nov 19.

20.

Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH.

Sosinska GJ, de Koning LJ, de Groot PWJ, Manders EMM, Dekker HL, Hellingwerf KJ, de Koster CG, Klis FM.

Microbiology. 2011 Jan;157(Pt 1):136-146. doi: 10.1099/mic.0.044206-0. Epub 2010 Sep 23.

PMID:
20864472
21.

The Candida albicans cell wall protein Rhd3/Pga29 is abundant in the yeast form and contributes to virulence.

de Boer AD, de Groot PW, Weindl G, Schaller M, Riedel D, Diez-Orejas R, Klis FM, de Koster CG, Dekker HL, Gross U, Bader O, Weig M.

Yeast. 2010 Aug;27(8):611-24. doi: 10.1002/yea.1790.

22.

Covalently linked wall proteins in ascomycetous fungi.

Klis FM, Brul S, De Groot PW.

Yeast. 2010 Aug;27(8):489-93. doi: 10.1002/yea.1747. Review.

23.

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans.

Jackson AP, Gamble JA, Yeomans T, Moran GP, Saunders D, Harris D, Aslett M, Barrell JF, Butler G, Citiulo F, Coleman DC, de Groot PW, Goodwin TJ, Quail MA, McQuillan J, Munro CA, Pain A, Poulter RT, Rajandream MA, Renauld H, Spiering MJ, Tivey A, Gow NA, Barrell B, Sullivan DJ, Berriman M.

Genome Res. 2009 Dec;19(12):2231-44. doi: 10.1101/gr.097501.109. Epub 2009 Sep 10.

24.

Covalently linked cell wall proteins of Candida albicans and their role in fitness and virulence.

Klis FM, Sosinska GJ, de Groot PW, Brul S.

FEMS Yeast Res. 2009 Oct;9(7):1013-28. doi: 10.1111/j.1567-1364.2009.00541.x. Epub 2009 Jun 22. Review.

25.

Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans.

de Groot PW, Brandt BW, Horiuchi H, Ram AF, de Koster CG, Klis FM.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S72-81.

PMID:
19585695
26.

Evolution of pathogenicity and sexual reproduction in eight Candida genomes.

Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA.

Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064.

27.

The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity.

Moreno-Ruiz E, Ortu G, de Groot PWJ, Cottier F, Loussert C, Prévost MC, de Koster C, Klis FM, Goyard S, d'Enfert C.

Microbiology. 2009 Jun;155(Pt 6):2004-2020. doi: 10.1099/mic.0.028902-0. Epub 2009 Apr 21.

PMID:
19383685
28.

Molecular and cellular mechanisms that lead to Candida biofilm formation.

ten Cate JM, Klis FM, Pereira-Cenci T, Crielaard W, de Groot PW.

J Dent Res. 2009 Feb;88(2):105-15. doi: 10.1177/0022034508329273. Review.

PMID:
19278980
29.

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Döhren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karányi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pócsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S2-13. doi: 10.1016/j.fgb.2008.12.003. Epub 2008 Dec 25.

30.

The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins.

de Groot PW, Kraneveld EA, Yin QY, Dekker HL, Gross U, Crielaard W, de Koster CG, Bader O, Klis FM, Weig M.

Eukaryot Cell. 2008 Nov;7(11):1951-64. doi: 10.1128/EC.00284-08. Epub 2008 Sep 19.

31.

A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae.

de Groot PW, Ruiz C, Vázquez de Aldana CR, Duenas E, Cid VJ, Del Rey F, Rodríquez-Peña JM, Pérez P, Andel A, Caubín J, Arroyo J, García JC, Gil C, Molina M, García LJ, Nombela C, Klis FM.

Comp Funct Genomics. 2001;2(3):124-42. doi: 10.1002/cfg.85.

32.

The conserved PA14 domain of cell wall-associated fungal adhesins governs their glycan-binding specificity.

de Groot PW, Klis FM.

Mol Microbiol. 2008 May;68(3):535-7. doi: 10.1111/j.1365-2958.2008.06182.x. Epub 2008 Mar 4.

33.

Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions.

Sosinska GJ, de Groot PWJ, Teixeira de Mattos MJ, Dekker HL, de Koster CG, Hellingwerf KJ, Klis FM.

Microbiology. 2008 Feb;154(Pt 2):510-520. doi: 10.1099/mic.0.2007/012617-0.

PMID:
18227255
34.

Mass spectrometry-based proteomics of fungal wall glycoproteins.

Yin QY, de Groot PW, de Koster CG, Klis FM.

Trends Microbiol. 2008 Jan;16(1):20-6. Epub 2007 Dec 21. Review.

PMID:
18096391
35.

Mass spectrometric quantitation of covalently bound cell wall proteins in Saccharomyces cerevisiae.

Yin QY, de Groot PW, de Jong L, Klis FM, De Koster CG.

FEMS Yeast Res. 2007 Sep;7(6):887-96. Epub 2007 Jul 6.

36.

Extraction of cell surface-associated proteins from living yeast cells.

Klis FM, de Jong M, Brul S, de Groot PW.

Yeast. 2007 Apr;24(4):253-8.

37.

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H.

Nat Biotechnol. 2007 Feb;25(2):221-31. Epub 2007 Jan 28.

PMID:
17259976
38.

Mass spectrometric identification of covalently bound cell wall proteins from the fission yeast Schizosaccharomyces pombe.

de Groot PW, Yin QY, Weig M, Sosinska GJ, Klis FM, de Koster CG.

Yeast. 2007 Apr;24(4):267-78.

39.

Identification of cell wall-associated proteins from Phytophthora ramorum.

Meijer HJ, van de Vondervoort PJ, Yin QY, de Koster CG, Klis FM, Govers F, de Groot PW.

Mol Plant Microbe Interact. 2006 Dec;19(12):1348-58.

40.

The CRH family coding for cell wall glycosylphosphatidylinositol proteins with a predicted transglycosidase domain affects cell wall organization and virulence of Candida albicans.

Pardini G, De Groot PW, Coste AT, Karababa M, Klis FM, de Koster CG, Sanglard D.

J Biol Chem. 2006 Dec 29;281(52):40399-411. Epub 2006 Oct 30.

41.
42.

Cell wall construction in Saccharomyces cerevisiae.

Klis FM, Boorsma A, De Groot PW.

Yeast. 2006 Feb;23(3):185-202. Review.

43.

Features and functions of covalently linked proteins in fungal cell walls.

De Groot PW, Ram AF, Klis FM.

Fungal Genet Biol. 2005 Aug;42(8):657-75. Review.

PMID:
15896991
44.
45.

Systematic identification in silico of covalently bound cell wall proteins and analysis of protein-polysaccharide linkages of the human pathogen Candida glabrata.

Weig M, Jänsch L, Gross U, De Koster CG, Klis FM, De Groot PW.

Microbiology. 2004 Oct;150(Pt 10):3129-44.

PMID:
15470094
46.

Proteomic analysis of Candida albicans cell walls reveals covalently bound carbohydrate-active enzymes and adhesins.

de Groot PW, de Boer AD, Cunningham J, Dekker HL, de Jong L, Hellingwerf KJ, de Koster C, Klis FM.

Eukaryot Cell. 2004 Aug;3(4):955-65.

47.

Genome-wide identification of fungal GPI proteins.

De Groot PW, Hellingwerf KJ, Klis FM.

Yeast. 2003 Jul 15;20(9):781-96.

48.

Different temporal and spatial expression of two hydrophobin-encoding genes of the edible mushroom Agaricus bisporus.

De Groot PWJ, Roeven RTP, Van Griensven LJLD, Visser J, Schaap PJ.

Microbiology. 1999 May;145 ( Pt 5):1105-1113. doi: 10.1099/13500872-145-5-1105.

PMID:
10376826
49.

An endo-1,4-beta-xylanase-encoding gene from Agaricus bisporus is regulated by compost-specific factors.

De Groot PW, Basten DE, Sonnenberg A, Van Griensven LJ, Visser J, Schaap PJ.

J Mol Biol. 1998 Mar 27;277(2):273-84.

PMID:
9514754
50.

Isolation of developmentally regulated genes from the edible mushroom Agaricus bisporus.

De Groot PW, Schaap PJ, Van Griensven LJ, Visser J.

Microbiology. 1997 Jun;143 ( Pt 6):1993-2001.

PMID:
9202475

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