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Milk From Cow Fed With High Forage/Concentrate Ratio Diet: Beneficial Effect on Rat Skeletal Muscle Inflammatory State and Oxidative Stress Through Modulation of Mitochondrial Functions and AMPK Activity.

Trinchese G, Cavaliere G, Penna E, De Filippo C, Cimmino F, Catapano A, Musco N, Tudisco R, Lombardi P, Infascelli F, Messina G, Muredda L, Banni S, Monda M, Crispino M, Mollica MP.

Front Physiol. 2019 Jan 17;9:1969. doi: 10.3389/fphys.2018.01969. eCollection 2018.


Gut microbiota in children and altered profiles in juvenile idiopathic arthritis.

De Filippo C, Di Paola M, Giani T, Tirelli F, Cimaz R.

J Autoimmun. 2019 Mar;98:1-12. doi: 10.1016/j.jaut.2019.01.001. Epub 2019 Jan 9. Review.


Isolation of clinically relevant concentrations of bone marrow mesenchymal stem cells without centrifugation.

Scarpone M, Kuebler D, Chambers A, De Filippo CM, Amatuzio M, Ichim TE, Patel AN, Caradonna E.

J Transl Med. 2019 Jan 5;17(1):10. doi: 10.1186/s12967-018-1750-x.


Peripheral Blood Mononuclear Cell Therapy for the Treatment of Lower Limb Ischemia in Diabetic Patients: Is It Really True?

Caradonna E, De Filippo CM, Modugno P, Testa N, Vanoli E, Amatuzio M, Farina M, Centritto EM.

Ann Vasc Surg. 2018 Nov 23. pii: S0890-5096(18)30867-7. doi: 10.1016/j.avsg.2018.10.010. [Epub ahead of print] No abstract available.


Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences.

de Filippo C, Meyer M, Prüfer K.

BMC Biol. 2018 Oct 25;16(1):121. doi: 10.1186/s12915-018-0581-9.


Oleoylethanolamide treatment affects gut microbiota composition and the expression of intestinal cytokines in Peyer's patches of mice.

Di Paola M, Bonechi E, Provensi G, Costa A, Clarke G, Ballerini C, De Filippo C, Passani MB.

Sci Rep. 2018 Oct 5;8(1):14881. doi: 10.1038/s41598-018-32925-x.


Nod2 Deficiency in mice is Associated with Microbiota Variation Favouring the Expansion of mucosal CD4+ LAP+ Regulatory Cells.

Butera A, Di Paola M, Pavarini L, Strati F, Pindo M, Sanchez M, Cavalieri D, Boirivant M, De Filippo C.

Sci Rep. 2018 Sep 24;8(1):14241. doi: 10.1038/s41598-018-32583-z.


Population genomics reveals evolution and variation of Saccharomyces cerevisiae in the human and insects gut.

Ramazzotti M, Stefanini I, Di Paola M, De Filippo C, Rizzetto L, Berná L, Dapporto L, Rivero D, Tocci N, Weil T, Lenucci MS, Lionetti P, Cavalieri D.

Environ Microbiol. 2019 Jan;21(1):50-71. doi: 10.1111/1462-2920.14422. Epub 2018 Nov 21.


The genome of the offspring of a Neanderthal mother and a Denisovan father.

Slon V, Mafessoni F, Vernot B, de Filippo C, Grote S, Viola B, Hajdinjak M, Peyrégne S, Nagel S, Brown S, Douka K, Higham T, Kozlikin MB, Shunkov MV, Derevianko AP, Kelso J, Meyer M, Prüfer K, Pääbo S.

Nature. 2018 Sep;561(7721):113-116. doi: 10.1038/s41586-018-0455-x. Epub 2018 Aug 22.


Host: Microbiome co-metabolic processing of dietary polyphenols - An acute, single blinded, cross-over study with different doses of apple polyphenols in healthy subjects.

Trošt K, Ulaszewska MM, Stanstrup J, Albanese D, De Filippo C, Tuohy KM, Natella F, Scaccini C, Mattivi F.

Food Res Int. 2018 Oct;112:108-128. doi: 10.1016/j.foodres.2018.06.016. Epub 2018 Jun 8.


Early and Mid-Term Results of Rapid Deployment Valves: The Intuity Italian Registry (INTU-ITA).

D'Onofrio A, Tessari C, Filippini C, Bagozzi L, Diena M, Alamanni F, Massetti M, Livi U, Di Eusanio M, Mignosa C, Russo C, Rinaldi M, Di Bartolomeo R, Salvador L, Antona C, Maselli D, De Paulis R, Luzi G, Alfieri O, De Filippo CM, Portoghese M, Musumeci F, Bortolotti U, Gerosa G.

Ann Thorac Surg. 2018 Dec;106(6):1742-1749. doi: 10.1016/j.athoracsur.2018.07.002. Epub 2018 Jul 25.


ECG-gated CT angiography of the thoracic aorta: the importance of evaluating the coronary arteries.

Pierro A, Cilla S, Totaro A, Ienco V, Sacra C, De Filippo CM, Sallustio G.

Clin Radiol. 2018 Nov;73(11):983.e1-983.e6. doi: 10.1016/j.crad.2018.06.016. Epub 2018 Jul 21.


Long Feeding High-Fat Diet Induces Hypothalamic Oxidative Stress and Inflammation, and Prolonged Hypothalamic AMPK Activation in Rat Animal Model.

Cavaliere G, Viggiano E, Trinchese G, De Filippo C, Messina A, Monda V, Valenzano A, Cincione RI, Zammit C, Cimmino F, Catapano A, Sessa F, Messina G, Monda M, Crispino M, Mollica MP.

Front Physiol. 2018 Jul 6;9:818. doi: 10.3389/fphys.2018.00818. eCollection 2018.


Improved outcome of bilateral compared to single internal thoracic artery grafting: patient's selection or technical skill?

Calafiore AM, De Filippo CM, Foschi M, Di Mauro M.

Ann Transl Med. 2018 May;6(10):189. doi: 10.21037/atm.2018.03.12. No abstract available.


Spontaneous rectus sheath hematoma: The utility of CT angiography.

Pierro A, Cilla S, Modugno P, Centritto EM, De Filippo CM, Sallustio G.

Radiol Case Rep. 2018 Feb 3;13(2):328-332. doi: 10.1016/j.radcr.2018.01.016. eCollection 2018 Apr.


Patterns of Aided Loudness Growth in Experienced Adult Listeners with Early-Onset Severe-Profound Hearing Loss.

Gottermeier L, De Filippo C.

J Am Acad Audiol. 2018 Jun;29(6):457-476. doi: 10.3766/jaaa.16060.


Intestinal Candida parapsilosis isolates from Rett syndrome subjects bear potential virulent traits and capacity to persist within the host.

Strati F, Calabrò A, Donati C, De Felice C, Hayek J, Jousson O, Leoncini S, Renzi D, Rizzetto L, De Filippo C, Cavalieri D.

BMC Gastroenterol. 2018 May 2;18(1):57. doi: 10.1186/s12876-018-0785-z.


Signatures of Long-Term Balancing Selection in Human Genomes.

Bitarello BD, de Filippo C, Teixeira JC, Schmidt JM, Kleinert P, Meyer D, Andrés AM.

Genome Biol Evol. 2018 Mar 1;10(3):939-955. doi: 10.1093/gbe/evy054.


Full Orifice Patching without Annuloplasty for Severe Functional Tricuspid Valve Regurgitation.

Calafiore AM, De Filippo CM, Totaro A, Pelini P, Mauro MD.

Thorac Cardiovasc Surg. 2018 Oct;66(7):572-574. doi: 10.1055/s-0038-1627450. Epub 2018 Mar 6.


Human Milk and Donkey Milk, Compared to Cow Milk, Reduce Inflammatory Mediators and Modulate Glucose and Lipid Metabolism, Acting on Mitochondrial Function and Oleylethanolamide Levels in Rat Skeletal Muscle.

Trinchese G, Cavaliere G, De Filippo C, Aceto S, Prisco M, Chun JT, Penna E, Negri R, Muredda L, Demurtas A, Banni S, Berni-Canani R, Mattace Raso G, Calignano A, Meli R, Greco L, Crispino M, Mollica MP.

Front Physiol. 2018 Jan 30;9:32. doi: 10.3389/fphys.2018.00032. eCollection 2018.


Genomic and Phenotypic Variation in Morphogenetic Networks of Two Candida albicans Isolates Subtends Their Different Pathogenic Potential.

Cavalieri D, Di Paola M, Rizzetto L, Tocci N, De Filippo C, Lionetti P, Ardizzoni A, Colombari B, Paulone S, Gut IG, Berná L, Gut M, Blanc J, Kapushesky M, Pericolini E, Blasi E, Peppoloni S.

Front Immunol. 2018 Jan 19;8:1997. doi: 10.3389/fimmu.2017.01997. eCollection 2017.


Milk from cows fed a diet with a high forage:concentrate ratio improves inflammatory state, oxidative stress, and mitochondrial function in rats.

Cavaliere G, Trinchese G, Musco N, Infascelli F, De Filippo C, Mastellone V, Morittu VM, Lombardi P, Tudisco R, Grossi M, Monda V, Cutrignelli MI, Messina A, Calabrò S, Moni HB, Stradella L, Messina G, Monda M, Crispino M, Mollica MP.

J Dairy Sci. 2018 Mar;101(3):1843-1851. doi: 10.3168/jds.2017-13550. Epub 2017 Dec 28.


SaccharomycesIDentifier, SID: strain-level analysis of Saccharomyces cerevisiae populations by using microsatellite meta-patterns.

Stefanini I, Albanese D, Sordo M, Legras JL, De Filippo C, Cavalieri D, Donati C.

Sci Rep. 2017 Nov 10;7(1):15343. doi: 10.1038/s41598-017-15729-3.


Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator).

Modesto M, Michelini S, Sansosti MC, De Filippo C, Cavalieri D, Qvirist L, Andlid T, Spiezio C, Sandri C, Pascarelli S, Sgorbati B, Mattarelli P.

Int J Syst Evol Microbiol. 2018 Jan;68(1):141-148. doi: 10.1099/ijsem.0.002472. Epub 2017 Nov 8.


Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy.

De Filippo C, Di Paola M, Ramazzotti M, Albanese D, Pieraccini G, Banci E, Miglietta F, Cavalieri D, Lionetti P.

Front Microbiol. 2017 Oct 13;8:1979. doi: 10.3389/fmicb.2017.01979. eCollection 2017.


Dynamic sonographic examination of an ectopic sublingual goiter.

Pierro A, Cilla S, Marcellino A, De Filippo CM, Sallustio G.

J Clin Ultrasound. 2018 Jan;46(1):64-65. doi: 10.1002/jcu.22553. Epub 2017 Oct 28. No abstract available.


The impact of endogenous content, replicates and pooling on genome capture from faecal samples.

Hernandez-Rodriguez J, Arandjelovic M, Lester J, de Filippo C, Weihmann A, Meyer M, Angedakin S, Casals F, Navarro A, Vigilant L, Kühl HS, Langergraber K, Boesch C, Hughes D, Marques-Bonet T.

Mol Ecol Resour. 2018 Mar;18(2):319-333. doi: 10.1111/1755-0998.12728. Epub 2017 Dec 4.


Routine preoperative thoracic angiography or just follow the gut feeling?

Calafiore AM, De Filippo C, Foschi M, Tancredi F, Di Mauro M.

J Thorac Cardiovasc Surg. 2018 Jan;155(1):e31-e32. doi: 10.1016/j.jtcvs.2017.09.084. Epub 2017 Sep 23. No abstract available.


A high-coverage Neandertal genome from Vindija Cave in Croatia.

Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, Theunert C, Rogers R, Skoglund P, Chintalapati M, Dannemann M, Nelson BJ, Key FM, Rudan P, Kućan Ž, Gušić I, Golovanova LV, Doronichev VB, Patterson N, Reich D, Eichler EE, Slatkin M, Schierup MH, Andrés AM, Kelso J, Meyer M, Pääbo S.

Science. 2017 Nov 3;358(6363):655-658. doi: 10.1126/science.aao1887. Epub 2017 Oct 5.


Characterization of cervico-vaginal microbiota in women developing persistent high-risk Human Papillomavirus infection.

Di Paola M, Sani C, Clemente AM, Iossa A, Perissi E, Castronovo G, Tanturli M, Rivero D, Cozzolino F, Cavalieri D, Carozzi F, De Filippo C, Torcia MG.

Sci Rep. 2017 Aug 31;7(1):10200. doi: 10.1038/s41598-017-09842-6.


Influence of essential oils in diet and life-stage on gut microbiota and fillet quality of rainbow trout (Oncorhynchus mykiss).

Ceppa F, Faccenda F, De Filippo C, Albanese D, Pindo M, Martelli R, Marconi P, Lunelli F, Fava F, Parisi G.

Int J Food Sci Nutr. 2018 May;69(3):318-333. doi: 10.1080/09637486.2017.1370699. Epub 2017 Aug 31.


Novel 5-(Benzo[b]thiophen-3-yl)pyridine-3-carbaldehyde (BTPA) Functionalization Framework For Modulating Fullerene Electronics.

John SV, De Filippo CC, Silvestrini S, Maggini M, Iwuoha E.

ChemistryOpen. 2017 Apr 4;6(3):354-359. doi: 10.1002/open.201600174. eCollection 2017 Jun.


Baroflex Activation Therapy for Refractory Congestive Heart Failure: Anesthetic Implications.

De Filippo CM, Liberatoscioli G, Testa N, Santamaria M, Mucciarone M, Modugno P, Massetti M, Gronda E, Vanoli E, Sacra C, Caradonna E.

J Cardiothorac Vasc Anesth. 2017 Jun;31(3):1103-1108. doi: 10.1053/j.jvca.2016.12.015. Epub 2016 Dec 18. No abstract available.


Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms.

Weil T, De Filippo C, Albanese D, Donati C, Pindo M, Pavarini L, Carotenuto F, Pasqui M, Poto L, Gabrieli J, Barbante C, Sattler B, Cavalieri D, Miglietta F.

Microbiome. 2017 Mar 10;5(1):32. doi: 10.1186/s40168-017-0249-7.


Butyrate Regulates Liver Mitochondrial Function, Efficiency, and Dynamics in Insulin-Resistant Obese Mice.

Mollica MP, Mattace Raso G, Cavaliere G, Trinchese G, De Filippo C, Aceto S, Prisco M, Pirozzi C, Di Guida F, Lama A, Crispino M, Tronino D, Di Vaio P, Berni Canani R, Calignano A, Meli R.

Diabetes. 2017 May;66(5):1405-1418. doi: 10.2337/db16-0924. Epub 2017 Feb 21.


New evidences on the altered gut microbiota in autism spectrum disorders.

Strati F, Cavalieri D, Albanese D, De Felice C, Donati C, Hayek J, Jousson O, Leoncini S, Renzi D, Calabrò A, De Filippo C.

Microbiome. 2017 Feb 22;5(1):24. doi: 10.1186/s40168-017-0242-1.


Isolation, Identification and Characterization of Yeasts from Fermented Goat Milk of the Yaghnob Valley in Tajikistan.

Qvirist LA, De Filippo C, Strati F, Stefanini I, Sordo M, Andlid T, Felis GE, Mattarelli P, Cavalieri D.

Front Microbiol. 2016 Nov 3;7:1690. eCollection 2016.


Alteration of Fecal Microbiota Profiles in Juvenile Idiopathic Arthritis. Associations with HLA-B27 Allele and Disease Status.

Di Paola M, Cavalieri D, Albanese D, Sordo M, Pindo M, Donati C, Pagnini I, Giani T, Simonini G, Paladini A, Lionetti P, De Filippo C, Cimaz R.

Front Microbiol. 2016 Oct 26;7:1703. eCollection 2016.


DNA copy number alterations, gene expression changes and disease-free survival in patients with colorectal cancer: a 10 year follow-up.

Bigagli E, De Filippo C, Castagnini C, Toti S, Acquadro F, Giudici F, Fazi M, Dolara P, Messerini L, Tonelli F, Luceri C.

Cell Oncol (Dordr). 2016 Dec;39(6):545-558. Epub 2016 Oct 5.


Uncovering oral Neisseria tropism and persistence using metagenomic sequencing.

Donati C, Zolfo M, Albanese D, Tin Truong D, Asnicar F, Iebba V, Cavalieri D, Jousson O, De Filippo C, Huttenhower C, Segata N.

Nat Microbiol. 2016 May 27;1(7):16070. doi: 10.1038/nmicrobiol.2016.70.


Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract.

Strati F, Di Paola M, Stefanini I, Albanese D, Rizzetto L, Lionetti P, Calabrò A, Jousson O, Donati C, Cavalieri D, De Filippo C.

Front Microbiol. 2016 Aug 3;7:1227. doi: 10.3389/fmicb.2016.01227. eCollection 2016.


Altered gut microbiota in Rett syndrome.

Strati F, Cavalieri D, Albanese D, De Felice C, Donati C, Hayek J, Jousson O, Leoncini S, Pindo M, Renzi D, Rizzetto L, Stefanini I, Calabrò A, De Filippo C.

Microbiome. 2016 Jul 30;4(1):41. doi: 10.1186/s40168-016-0185-y.


Effects of an High-Fat Diet Enriched in Lard or in Fish Oil on the Hypothalamic Amp-Activated Protein Kinase and Inflammatory Mediators.

Viggiano E, Mollica MP, Lionetti L, Cavaliere G, Trinchese G, De Filippo C, Chieffi S, Gaita M, Barletta A, De Luca B, Crispino M, Monda M.

Front Cell Neurosci. 2016 Jun 9;10:150. doi: 10.3389/fncel.2016.00150. eCollection 2016.


Trials of a Contralateral Hearing Aid After Long-Term Unilateral Cochlear Implant Use in Early-Onset Deafness.

Gottermeier L, De Filippo C, Clark C.

Am J Audiol. 2016 Jun 1;25(2):85-99. doi: 10.1044/2016_AJA-15-0058.


Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.

Meyer M, Arsuaga JL, de Filippo C, Nagel S, Aximu-Petri A, Nickel B, Martínez I, Gracia A, Bermúdez de Castro JM, Carbonell E, Viola B, Kelso J, Prüfer K, Pääbo S.

Nature. 2016 Mar 24;531(7595):504-7. doi: 10.1038/nature17405. Epub 2016 Mar 14.


Evaluation of the effects of intrapartum antibiotic prophylaxis on newborn intestinal microbiota using a sequencing approach targeted to multi hypervariable 16S rDNA regions.

Aloisio I, Quagliariello A, De Fanti S, Luiselli D, De Filippo C, Albanese D, Corvaglia LT, Faldella G, Di Gioia D.

Appl Microbiol Biotechnol. 2016 Jun;100(12):5537-46. doi: 10.1007/s00253-016-7410-2. Epub 2016 Mar 14.


Polyunsaturated Fatty Acids Attenuate Diet Induced Obesity and Insulin Resistance, Modulating Mitochondrial Respiratory Uncoupling in Rat Skeletal Muscle.

Cavaliere G, Trinchese G, Bergamo P, De Filippo C, Mattace Raso G, Gifuni G, Putti R, Moni BH, Canani RB, Meli R, Mollica MP.

PLoS One. 2016 Feb 22;11(2):e0149033. doi: 10.1371/journal.pone.0149033. eCollection 2016.


Fungal Chitin Induces Trained Immunity in Human Monocytes during Cross-talk of the Host with Saccharomyces cerevisiae.

Rizzetto L, Ifrim DC, Moretti S, Tocci N, Cheng SC, Quintin J, Renga G, Oikonomou V, De Filippo C, Weil T, Blok BA, Lenucci MS, Santos MA, Romani L, Netea MG, Cavalieri D.

J Biol Chem. 2016 Apr 8;291(15):7961-72. doi: 10.1074/jbc.M115.699645. Epub 2016 Feb 17.


Ancient gene flow from early modern humans into Eastern Neanderthals.

Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Marques-Bonet T, Andrés AM, Viola B, Pääbo S, Meyer M, Siepel A, Castellano S.

Nature. 2016 Feb 25;530(7591):429-33. doi: 10.1038/nature16544. Epub 2016 Feb 17.


Recent Selection Changes in Human Genes under Long-Term Balancing Selection.

de Filippo C, Key FM, Ghirotto S, Benazzo A, Meneu JR, Weihmann A; NISC Comparative Sequence Program, Parra G, Green ED, Andrés AM.

Mol Biol Evol. 2016 Jun;33(6):1435-47. doi: 10.1093/molbev/msw023. Epub 2016 Feb 1.

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