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Items: 36

1.

Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations.

Belkhelfa S, Roche D, Dubois I, Berger A, Delmas VA, Cattolico L, Perret A, Labadie K, Perdereau AC, Darii E, Pateau E, de Berardinis V, Salanoubat M, Bouzon M, Döring V.

Front Microbiol. 2019 Jun 20;10:1313. doi: 10.3389/fmicb.2019.01313. eCollection 2019.

2.

2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates.

Chambre D, Guérard-Hélaine C, Darii E, Mariage A, Petit JL, Salanoubat M, de Berardinis V, Lemaire M, Hélaine V.

Chem Commun (Camb). 2019 Jul 4;55(52):7498-7501. doi: 10.1039/c9cc03361k. Epub 2019 Jun 12.

PMID:
31187106
3.

Exploring natural biodiversity to expand access to microbial terpene synthesis.

Rico J, Duquesne K, Petit JL, Mariage A, Darii E, Peruch F, de Berardinis V, Iacazio G.

Microb Cell Fact. 2019 Feb 1;18(1):23. doi: 10.1186/s12934-019-1074-4.

4.

Characterization of a thermotolerant ROK-type mannofructokinase from Streptococcus mitis: application to the synthesis of phosphorylated sugars.

Vergne-Vaxelaire C, Mariage A, Petit JL, Fossey-Jouenne A, Guérard-Hélaine C, Darii E, Debard A, Nepert S, Pellouin V, Lemaire M, Zaparucha A, Salanoubat M, de Berardinis V.

Appl Microbiol Biotechnol. 2018 Jul;102(13):5569-5583. doi: 10.1007/s00253-018-9018-1. Epub 2018 May 4.

PMID:
29728726
5.

Elucidation of the trigonelline degradation pathway reveals previously undescribed enzymes and metabolites.

Perchat N, Saaidi PL, Darii E, Pellé C, Petit JL, Besnard-Gonnet M, de Berardinis V, Dupont M, Gimbernat A, Salanoubat M, Fischer C, Perret A.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):E4358-E4367. doi: 10.1073/pnas.1722368115. Epub 2018 Apr 23.

6.

Synthesis of Branched-Chain Sugars with a DHAP-Dependent Aldolase: Ketones are Electrophile Substrates of Rhamnulose-1-phosphate Aldolases.

Laurent V, Darii E, Aujon A, Debacker M, Petit JL, Hélaine V, Liptaj T, Breza M, Mariage A, Nauton L, Traïkia M, Salanoubat M, Lemaire M, Guérard-Hélaine C, de Berardinis V.

Angew Chem Int Ed Engl. 2018 May 4;57(19):5467-5471. doi: 10.1002/anie.201712851. Epub 2018 Mar 30.

PMID:
29542859
7.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.

Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P.

Nat Commun. 2018 Jan 22;9(1):310. doi: 10.1038/s41467-017-02235-3.

8.

Continuous High-Throughput Colorimetric Assays for α-Transaminases.

Heuson E, Petit JL, Charmantray F, de Bérardinis V, Gefflaut T.

Methods Mol Biol. 2018;1685:233-245. doi: 10.1007/978-1-4939-7366-8_13.

PMID:
29086312
9.

Corrigendum: Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.

Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Médigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M, de Berardinis V.

Nat Chem Biol. 2017 Sep 19;13(10):1137. doi: 10.1038/nchembio1017-1137c. No abstract available.

PMID:
28926556
10.

Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.

Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Médigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M, de Berardinis V.

Nat Chem Biol. 2017 Aug;13(8):858-866. doi: 10.1038/nchembio.2397. Epub 2017 Jun 5. Erratum in: Nat Chem Biol. 2017 Sep 19;13(10 ):1137.

PMID:
28581482
11.

Stereoselective synthesis of γ-hydroxy-α-amino acids through aldolase-transaminase recycling cascades.

Guérard-Hélaine C, Heuson E, Ndiaye M, Gourbeyre L, Lemaire M, Hélaine V, Charmantray F, Petit JL, Salanoubat M, de Berardinis V, Gefflaut T.

Chem Commun (Camb). 2017 May 11;53(39):5465-5468. doi: 10.1039/c7cc00742f.

PMID:
28466909
12.

Genetic Dissection of the Type VI Secretion System in Acinetobacter and Identification of a Novel Peptidoglycan Hydrolase, TagX, Required for Its Biogenesis.

Weber BS, Hennon SW, Wright MS, Scott NE, de Berardinis V, Foster LJ, Ayala JA, Adams MD, Feldman MF.

MBio. 2016 Oct 11;7(5). pii: e01253-16. doi: 10.1128/mBio.01253-16.

13.

Osmotic stress response in Acinetobacter baylyi: identification of a glycine-betaine biosynthesis pathway and regulation of osmoadaptive choline uptake and glycine-betaine synthesis through a choline-responsive BetI repressor.

Scholz A, Stahl J, de Berardinis V, Müller V, Averhoff B.

Environ Microbiol Rep. 2016 Apr;8(2):316-22. doi: 10.1111/1758-2229.12382. Epub 2016 Feb 23.

PMID:
26910138
14.

Continuous colorimetric screening assays for the detection of specific L- or D-α-amino acid transaminases in enzyme libraries.

Heuson E, Petit JL, Debard A, Job A, Charmantray F, de Berardinis V, Gefflaut T.

Appl Microbiol Biotechnol. 2016 Jan;100(1):397-408. doi: 10.1007/s00253-015-6988-0. Epub 2015 Oct 9.

PMID:
26452497
15.

Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach.

Stuani L, Lechaplais C, Salminen AV, Ségurens B, Durot M, Castelli V, Pinet A, Labadie K, Cruveiller S, Weissenbach J, de Berardinis V, Salanoubat M, Perret A.

Metabolomics. 2014;10(6):1223-1238. doi: 10.1007/s11306-014-0662-x. Epub 2014 Apr 29.

16.

Broadening the scope of Baeyer-Villiger monooxygenase activities toward α,β-unsaturated ketones: a promising route to chiral enol-lactones and ene-lactones.

Reignier T, de Berardinis V, Petit JL, Mariage A, Hamzé K, Duquesne K, Alphand V.

Chem Commun (Camb). 2014 Jul 25;50(58):7793-6. doi: 10.1039/c4cc02541e.

PMID:
24903773
17.

Surgical margins in breast conservation.

Chiappa C, Rovera F, Corben AD, Fachinetti A, De Berardinis V, Marchionini V, Rausei S, Boni L, Dionigi G, Dionigi R.

Int J Surg. 2013;11 Suppl 1:S69-72. doi: 10.1016/S1743-9191(13)60021-7. Review.

18.

Revealing the hidden functional diversity of an enzyme family.

Bastard K, Smith AA, Vergne-Vaxelaire C, Perret A, Zaparucha A, De Melo-Minardi R, Mariage A, Boutard M, Debard A, Lechaplais C, Pelle C, Pellouin V, Perchat N, Petit JL, Kreimeyer A, Medigue C, Weissenbach J, Artiguenave F, De Berardinis V, Vallenet D, Salanoubat M.

Nat Chem Biol. 2014 Jan;10(1):42-9. doi: 10.1038/nchembio.1387. Epub 2013 Nov 17.

PMID:
24240508
19.

Microbial urate catabolism: characterization of HpyO, a non-homologous isofunctional isoform of the flavoprotein urate hydroxylase HpxO.

Michiel M, Perchat N, Perret A, Tricot S, Papeil A, Besnard M, de Berardinis V, Salanoubat M, Fischer C.

Environ Microbiol Rep. 2012 Dec;4(6):642-7. doi: 10.1111/j.1758-2229.2012.00390.x. Epub 2012 Sep 25.

PMID:
23760935
20.

Evolution study of the Baeyer-Villiger monooxygenases enzyme family: functional importance of the highly conserved residues.

Rebehmed J, Alphand V, de Berardinis V, de Brevern AG.

Biochimie. 2013 Jul;95(7):1394-402. doi: 10.1016/j.biochi.2013.03.005. Epub 2013 Mar 22.

21.

Structure and biosynthesis of fimsbactins A-F, siderophores from Acinetobacter baumannii and Acinetobacter baylyi.

Proschak A, Lubuta P, Grün P, Löhr F, Wilharm G, De Berardinis V, Bode HB.

Chembiochem. 2013 Mar 18;14(5):633-8. doi: 10.1002/cbic.201200764. Epub 2013 Mar 1.

PMID:
23456955
22.

Surface-associated motility, a common trait of clinical isolates of Acinetobacter baumannii, depends on 1,3-diaminopropane.

Skiebe E, de Berardinis V, Morczinek P, Kerrinnes T, Faber F, Lepka D, Hammer B, Zimmermann O, Ziesing S, Wichelhaus TA, Hunfeld KP, Borgmann S, Gröbner S, Higgins PG, Seifert H, Busse HJ, Witte W, Pfeifer Y, Wilharm G.

Int J Med Microbiol. 2012 Jul;302(3):117-28. doi: 10.1016/j.ijmm.2012.03.003. Epub 2012 May 3.

PMID:
22560766
23.

Salt adaptation in Acinetobacter baylyi: identification and characterization of a secondary glycine betaine transporter.

Sand M, de Berardinis V, Mingote A, Santos H, Göttig S, Müller V, Averhoff B.

Arch Microbiol. 2011 Oct;193(10):723-30. doi: 10.1007/s00203-011-0713-x. Epub 2011 May 13.

PMID:
21567174
24.

Acinetobacter baylyi ADP1 as a model for metabolic system biology.

de Berardinis V, Durot M, Weissenbach J, Salanoubat M.

Curr Opin Microbiol. 2009 Oct;12(5):568-76. doi: 10.1016/j.mib.2009.07.005. Epub 2009 Aug 24. Review.

PMID:
19709925
25.

Breast cancer diagnosis: the role of stereotactic vacuum-assisted aspiration biopsy.

Rovera F, Dionigi G, Marelli M, Ferrari A, Limonta G, Corben AD, Boni L, Piscopo C, De Berardinis V, Dionigi R.

Int J Surg. 2008;6 Suppl 1:S104-8. doi: 10.1016/j.ijsu.2008.12.009. Epub 2008 Dec 13.

26.

Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data.

Durot M, Le Fèvre F, de Berardinis V, Kreimeyer A, Vallenet D, Combe C, Smidtas S, Salanoubat M, Weissenbach J, Schachter V.

BMC Syst Biol. 2008 Oct 7;2:85. doi: 10.1186/1752-0509-2-85.

27.

A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance.

Moroldo M, Paillard S, Marconi R, Fabrice L, Canaguier A, Cruaud C, De Berardinis V, Guichard C, Brunaud V, Le Clainche I, Scalabrin S, Testolin R, Di Gaspero G, Morgante M, Adam-Blondon AF.

BMC Plant Biol. 2008 Jun 13;8:66. doi: 10.1186/1471-2229-8-66.

28.

New insights into the alternative D-glucarate degradation pathway.

Aghaie A, Lechaplais C, Sirven P, Tricot S, Besnard-Gonnet M, Muselet D, de Berardinis V, Kreimeyer A, Gyapay G, Salanoubat M, Perret A.

J Biol Chem. 2008 Jun 6;283(23):15638-46. doi: 10.1074/jbc.M800487200. Epub 2008 Mar 25.

29.

A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.

de Berardinis V, Vallenet D, Castelli V, Besnard M, Pinet A, Cruaud C, Samair S, Lechaplais C, Gyapay G, Richez C, Durot M, Kreimeyer A, Le Fèvre F, Schächter V, Pezo V, Döring V, Scarpelli C, Médigue C, Cohen GN, Marlière P, Salanoubat M, Weissenbach J.

Mol Syst Biol. 2008;4:174. doi: 10.1038/msb.2008.10. Epub 2008 Mar 4.

30.

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.

Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biémont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigó R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quétier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H.

Nature. 2004 Oct 21;431(7011):946-57.

PMID:
15496914
31.

Numerous novel annotations of the human genome sequence supported by a 5'-end-enriched cDNA collection.

Porcel BM, Delfour O, Castelli V, De Berardinis V, Friedlander L, Cruaud C, Ureta-Vidal A, Scarpelli C, Wincker P, Schächter V, Saurin W, Gyapay G, Salanoubat M, Weissenbach J.

Genome Res. 2004 Mar;14(3):463-71. Epub 2004 Feb 12.

32.

The DNA sequence and analysis of human chromosome 14.

Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, Qin S, Sun H, Du H, Pepin K, Artiguenave F, Robert C, Cruaud C, Brüls T, Jaillon O, Friedlander L, Samson G, Brottier P, Cure S, Ségurens B, Anière F, Samain S, Crespeau H, Abbasi N, Aiach N, Boscus D, Dickhoff R, Dors M, Dubois I, Friedman C, Gouyvenoux M, James R, Madan A, Mairey-Estrada B, Mangenot S, Martins N, Ménard M, Oztas S, Ratcliffe A, Shaffer T, Trask B, Vacherie B, Bellemere C, Belser C, Besnard-Gonnet M, Bartol-Mavel D, Boutard M, Briez-Silla S, Combette S, Dufossé-Laurent V, Ferron C, Lechaplais C, Louesse C, Muselet D, Magdelenat G, Pateau E, Petit E, Sirvain-Trukniewicz P, Trybou A, Vega-Czarny N, Bataille E, Bluet E, Bordelais I, Dubois M, Dumont C, Guérin T, Haffray S, Hammadi R, Muanga J, Pellouin V, Robert D, Wunderle E, Gauguet G, Roy A, Sainte-Marthe L, Verdier J, Verdier-Discala C, Hillier L, Fulton L, McPherson J, Matsuda F, Wilson R, Scarpelli C, Gyapay G, Wincker P, Saurin W, Quétier F, Waterston R, Hood L, Weissenbach J.

Nature. 2003 Feb 6;421(6923):601-7. Epub 2003 Jan 1.

PMID:
12508121
33.

The genome sequence of the malaria mosquito Anopheles gambiae.

Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O'Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL.

Science. 2002 Oct 4;298(5591):129-49.

34.

Human epoxide hydrolase is the target of germander autoantibodies on the surface of human hepatocytes: enzymatic implications.

Loeper J, De Berardinis V, Moulis C, Beaune P, Pessayre D, Pompon D.

Adv Exp Med Biol. 2001;500:121-4. No abstract available.

PMID:
11764922
35.

Human microsomal epoxide hydrolase is the target of germander-induced autoantibodies on the surface of human hepatocytes.

De Berardinis V, Moulis C, Maurice M, Beaune P, Pessayre D, Pompon D, Loeper J.

Mol Pharmacol. 2000 Sep;58(3):542-51.

PMID:
10953047
36.

Human CYP2B6: expression, inducibility and catalytic activities.

Gervot L, Rochat B, Gautier JC, Bohnenstengel F, Kroemer H, de Berardinis V, Martin H, Beaune P, de Waziers I.

Pharmacogenetics. 1999 Jun;9(3):295-306.

PMID:
10471061

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