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Items: 27

1.

Sequence-based epidemiology of an OXA-48 plasmid during a hospital outbreak.

Hidalgo L, de Been M, Rogers MRC, Schürch AC, Scharringa J, van der Zee A, Bonten MJM, Fluit AC.

Antimicrob Agents Chemother. 2019 Oct 7. pii: AAC.01204-19. doi: 10.1128/AAC.01204-19. [Epub ahead of print]

PMID:
31591122
2.

RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum.

Zhang X, de Maat V, Guzmán Prieto AM, Prajsnar TK, Bayjanov JR, de Been M, Rogers MRC, Bonten MJM, Mesnage S, Willems RJL, van Schaik W.

BMC Genomics. 2017 Nov 21;18(1):893. doi: 10.1186/s12864-017-4299-9.

3.

Within-Host Evolution of the Dutch High-Prevalent Pseudomonas aeruginosa Clone ST406 during Chronic Colonization of a Patient with Cystic Fibrosis.

van Mansfeld R, de Been M, Paganelli F, Yang L, Bonten M, Willems R.

PLoS One. 2016 Jun 23;11(6):e0158106. doi: 10.1371/journal.pone.0158106. eCollection 2016.

4.

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.

Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM.

PLoS One. 2016 Apr 12;11(4):e0153294. doi: 10.1371/journal.pone.0153294. eCollection 2016.

5.

Directional gene flow and ecological separation in Yersinia enterocolitica.

Reuter S, Corander J, de Been M, Harris S, Cheng L, Hall M, Thomson NR, McNally A.

Microb Genom. 2015 Sep 29;1(3):e000030. doi: 10.1099/mgen.0.000030. eCollection 2015 Sep.

6.

Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium.

de Been M, Pinholt M, Top J, Bletz S, Mellmann A, van Schaik W, Brouwer E, Rogers M, Kraat Y, Bonten M, Corander J, Westh H, Harmsen D, Willems RJ.

J Clin Microbiol. 2015 Dec;53(12):3788-97.

7.

Growth condition-dependent cell surface proteome analysis of Enterococcus faecium.

Sinnige JC, de Been M, Zhou M, Bonten MJ, Willems RJ, Top J.

Proteomics. 2015 Nov;15(22):3806-14. doi: 10.1002/pmic.201500138. Epub 2015 Oct 2.

PMID:
26316380
8.

Distinct SagA from Hospital-Associated Clade A1 Enterococcus faecium Strains Contributes to Biofilm Formation.

Paganelli FL, de Been M, Braat JC, Hoogenboezem T, Vink C, Bayjanov J, Rogers MR, Huebner J, Bonten MJ, Willems RJ, Leavis HL.

Appl Environ Microbiol. 2015 Oct;81(19):6873-82. doi: 10.1128/AEM.01716-15. Epub 2015 Jul 24.

9.

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

Méric G, Miragaia M, de Been M, Yahara K, Pascoe B, Mageiros L, Mikhail J, Harris LG, Wilkinson TS, Rolo J, Lamble S, Bray JE, Jolley KA, Hanage WP, Bowden R, Maiden MC, Mack D, de Lencastre H, Feil EJ, Corander J, Sheppard SK.

Genome Biol Evol. 2015 Apr 16;7(5):1313-28. doi: 10.1093/gbe/evv066.

10.

Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages.

de Been M, Lanza VF, de Toro M, Scharringa J, Dohmen W, Du Y, Hu J, Lei Y, Li N, Tooming-Klunderud A, Heederik DJ, Fluit AC, Bonten MJ, Willems RJ, de la Cruz F, van Schaik W.

PLoS Genet. 2014 Dec 18;10(12):e1004776. doi: 10.1371/journal.pgen.1004776. eCollection 2014 Dec.

11.

The salivary scavenger and agglutinin in early life: diverse roles in amniotic fluid and in the infant intestine.

Reichhardt MP, Jarva H, de Been M, Rodriguez JM, Jimenez Quintana E, Loimaranta V, de Vos WM, Meri S.

J Immunol. 2014 Nov 15;193(10):5240-8. doi: 10.4049/jimmunol.1401631. Epub 2014 Oct 15.

12.

Effects of selective digestive decontamination (SDD) on the gut resistome.

Buelow E, Gonzalez TB, Versluis D, Oostdijk EA, Ogilvie LA, van Mourik MS, Oosterink E, van Passel MW, Smidt H, D'Andrea MM, de Been M, Jones BV, Willems RJ, Bonten MJ, van Schaik W.

J Antimicrob Chemother. 2014 Aug;69(8):2215-23. doi: 10.1093/jac/dku092. Epub 2014 Apr 7.

PMID:
24710024
13.

Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium.

de Been M, van Schaik W, Cheng L, Corander J, Willems RJ.

Genome Biol Evol. 2013;5(8):1524-35. doi: 10.1093/gbe/evt111.

14.

Identification of a genetic determinant in clinical Enterococcus faecium strains that contributes to intestinal colonization during antibiotic treatment.

Zhang X, Top J, de Been M, Bierschenk D, Rogers M, Leendertse M, Bonten MJ, van der Poll T, Willems RJ, van Schaik W.

J Infect Dis. 2013 Jun 1;207(11):1780-6. doi: 10.1093/infdis/jit076. Epub 2013 Feb 27.

PMID:
23447698
15.

A multicomponent sugar phosphate sensor system specifically induced in Bacillus cereus during infection of the insect gut.

Song F, Peng Q, Brillard J, Buisson C, de Been M, Abee T, Broussolle V, Huang D, Zhang J, Lereclus D, Nielsen-LeRoux C.

FASEB J. 2012 Aug;26(8):3336-50. doi: 10.1096/fj.11-197681. Epub 2012 May 18.

PMID:
22611084
16.

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions.

Kolmeder CA, de Been M, Nikkilä J, Ritamo I, Mättö J, Valmu L, Salojärvi J, Palva A, Salonen A, de Vos WM.

PLoS One. 2012;7(1):e29913. doi: 10.1371/journal.pone.0029913. Epub 2012 Jan 18.

17.

From transcriptional landscapes to the identification of biomarkers for robustness.

Abee T, Wels M, de Been M, den Besten H.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S9. doi: 10.1186/1475-2859-10-S1-S9. Epub 2011 Aug 30. Review.

18.

An iterative workflow for mining the human intestinal metaproteome.

Rooijers K, Kolmeder C, Juste C, Doré J, de Been M, Boeren S, Galan P, Beauvallet C, de Vos WM, Schaap PJ.

BMC Genomics. 2011 Jan 5;12:6. doi: 10.1186/1471-2164-12-6.

19.

Novel sigmaB regulation modules of Gram-positive bacteria involve the use of complex hybrid histidine kinases.

de Been M, Francke C, Siezen RJ, Abee T.

Microbiology. 2011 Jan;157(Pt 1):3-12. doi: 10.1099/mic.0.045740-0. Epub 2010 Nov 4. Review.

PMID:
21051490
20.

A novel hybrid kinase is essential for regulating the sigma(B)-mediated stress response of Bacillus cereus.

de Been M, Tempelaars MH, van Schaik W, Moezelaar R, Siezen RJ, Abee T.

Environ Microbiol. 2010 Mar;12(3):730-45. doi: 10.1111/j.1462-2920.2009.02116.x. Epub 2009 Dec 3.

PMID:
19958380
21.

The identification of response regulator-specific binding sites reveals new roles of two-component systems in Bacillus cereus and closely related low-GC Gram-positives.

de Been M, Bart MJ, Abee T, Siezen RJ, Francke C.

Environ Microbiol. 2008 Oct;10(10):2796-809. doi: 10.1111/j.1462-2920.2008.01700.x. Epub 2008 Jul 25.

PMID:
18662309
22.

Generation of a 3D indexed Petunia insertion database for reverse genetics.

Vandenbussche M, Janssen A, Zethof J, van Orsouw N, Peters J, van Eijk MJ, Rijpkema AS, Schneiders H, Santhanam P, de Been M, van Tunen A, Gerats T.

Plant J. 2008 Jun;54(6):1105-14. doi: 10.1111/j.1365-313X.2008.03482.x. Epub 2008 Mar 13.

23.

Metabolic capacity of Bacillus cereus strains ATCC 14579 and ATCC 10987 interlinked with comparative genomics.

Mols M, de Been M, Zwietering MH, Moezelaar R, Abee T.

Environ Microbiol. 2007 Dec;9(12):2933-44.

PMID:
17991024
24.

Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis.

de Been M, Francke C, Moezelaar R, Abee T, Siezen RJ.

Microbiology. 2006 Oct;152(Pt 10):3035-48.

PMID:
17005984
25.

A new soluble 10kDa monoheme cytochrome c-552 from the anammox bacterium Candidatus "Kuenenia stuttgartiensis".

Cirpus IE, de Been M, den Camp HJ, Strous M, Le Paslier D, Kuenen GJ, Jetten MS.

FEMS Microbiol Lett. 2005 Nov 15;252(2):273-8. Epub 2005 Sep 22.

26.

Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs.

Boekhorst J, de Been MW, Kleerebezem M, Siezen RJ.

J Bacteriol. 2005 Jul;187(14):4928-34.

27.

Silencing of the pollen-specific gene NTP303 and its family members in tobacco affects in vivo pollen tube growth and results in male sterile plants.

de Groot P, Weterings K, de Been M, Wittink F, Hulzink R, Custers J, van Herpen M, Wullems G.

Plant Mol Biol. 2004 Jul;55(5):715-26.

PMID:
15604712

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