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Items: 1 to 20 of 45

1.

Tracking the popularity and outcomes of all bioRxiv preprints.

Abdill RJ, Blekhman R.

Elife. 2019 Apr 24;8. pii: e45133. doi: 10.7554/eLife.45133.

2.

Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species.

Grieneisen LE, Charpentier MJE, Alberts SC, Blekhman R, Bradburd G, Tung J, Archie EA.

Proc Biol Sci. 2019 Apr 24;286(1901):20190431. doi: 10.1098/rspb.2019.0431.

PMID:
31014219
3.

Improving the usability and archival stability of bioinformatics software.

Mangul S, Martin LS, Eskin E, Blekhman R.

Genome Biol. 2019 Feb 27;20(1):47. doi: 10.1186/s13059-019-1649-8.

4.

Megaphages infect Prevotella and variants are widespread in gut microbiomes.

Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF.

Nat Microbiol. 2019 Apr;4(4):693-700. doi: 10.1038/s41564-018-0338-9. Epub 2019 Jan 28.

PMID:
30692672
5.

Integrating tumor genomics into studies of the microbiome in colorectal cancer.

Burns MB, Blekhman R.

Gut Microbes. 2018 Dec 17:1-6. doi: 10.1080/19490976.2018.1549421. [Epub ahead of print]

PMID:
30556775
6.

Gut microbiota diversity across ethnicities in the United States.

Brooks AW, Priya S, Blekhman R, Bordenstein SR.

PLoS Biol. 2018 Dec 4;16(12):e2006842. doi: 10.1371/journal.pbio.2006842. eCollection 2018 Dec.

7.

Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers.

Hale VL, Jeraldo P, Chen J, Mundy M, Yao J, Priya S, Keeney G, Lyke K, Ridlon J, White BA, French AJ, Thibodeau SN, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Sung J, Blekhman R, Boardman L, Larson D, Nelson H, Chia N.

Genome Med. 2018 Oct 31;10(1):78. doi: 10.1186/s13073-018-0586-6.

8.

Transposon mutagenesis screen in mice identifies TM9SF2 as a novel colorectal cancer oncogene.

Clark CR, Maile M, Blaney P, Hellweg SR, Strauss A, Durose W, Priya S, Habicht J, Burns MB, Blekhman R, Abrahante JE, Starr TK.

Sci Rep. 2018 Oct 17;8(1):15327. doi: 10.1038/s41598-018-33527-3.

9.

Erratum for Grieneisen and Blekhman, "Crowdsourcing Our National Gut".

Grieneisen LE, Blekhman R.

mSystems. 2018 Jul 10;3(4). pii: e00114-18. doi: 10.1128/mSystems.00114-18. eCollection 2018 Jul-Aug.

10.

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment.

Burns MB, Montassier E, Abrahante J, Priya S, Niccum DE, Khoruts A, Starr TK, Knights D, Blekhman R.

PLoS Genet. 2018 Jun 20;14(6):e1007376. doi: 10.1371/journal.pgen.1007376. eCollection 2018 Jun.

11.

The gut microbiome of nonhuman primates: Lessons in ecology and evolution.

Clayton JB, Gomez A, Amato K, Knights D, Travis DA, Blekhman R, Knight R, Leigh S, Stumpf R, Wolf T, Glander KE, Cabana F, Johnson TJ.

Am J Primatol. 2018 Jun;80(6):e22867. doi: 10.1002/ajp.22867. Epub 2018 Jun 4. Review.

PMID:
29862519
12.

Crowdsourcing Our National Gut.

Grieneisen LE, Blekhman R.

mSystems. 2018 May 9;3(3). pii: e00060-18. doi: 10.1128/mSystems.00060-18. eCollection 2018 May-Jun. Erratum in: mSystems. 2018 Jul 10;3(4):.

13.

Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer.

Yuan C, Burns MB, Subramanian S, Blekhman R.

mSystems. 2018 May 15;3(3). pii: e00205-17. doi: 10.1128/mSystems.00205-17. eCollection 2018 May-Jun.

14.

HOMINID: a framework for identifying associations between host genetic variation and microbiome composition.

Lynch J, Tang K, Priya S, Sands J, Sands M, Tang E, Mukherjee S, Knights D, Blekhman R.

Gigascience. 2017 Dec 1;6(12):1-7. doi: 10.1093/gigascience/gix107.

15.

Functional Genomics of Host-Microbiome Interactions in Humans.

Luca F, Kupfer SS, Knights D, Khoruts A, Blekhman R.

Trends Genet. 2018 Jan;34(1):30-40. doi: 10.1016/j.tig.2017.10.001. Epub 2017 Oct 26. Review.

16.

Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation.

Xu D, Pavlidis P, Taskent RO, Alachiotis N, Flanagan C, DeGiorgio M, Blekhman R, Ruhl S, Gokcumen O.

Mol Biol Evol. 2017 Oct 1;34(10):2704-2715. doi: 10.1093/molbev/msx206.

17.

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens.

Nédélec Y, Sanz J, Baharian G, Szpiech ZA, Pacis A, Dumaine A, Grenier JC, Freiman A, Sams AJ, Hebert S, Pagé Sabourin A, Luca F, Blekhman R, Hernandez RD, Pique-Regi R, Tung J, Yotova V, Barreiro LB.

Cell. 2016 Oct 20;167(3):657-669.e21. doi: 10.1016/j.cell.2016.09.025.

18.

Genetic and transcriptional analysis of human host response to healthy gut microbiota.

Richards AL, Burns MB, Alazizi A, Barreiro LB, Pique-Regi R, Blekhman R, Luca F.

mSystems. 2016 Jul-Aug;1(4). pii: e00067-16. Epub 2016 Aug 30.

19.

Atopic Dermatitis Susceptibility Variants in Filaggrin Hitchhike Hornerin Selective Sweep.

Eaaswarkhanth M, Xu D, Flanagan C, Rzhetskaya M, Hayes MG, Blekhman R, Jablonski NG, Gokcumen O.

Genome Biol Evol. 2016 Nov 11;8(10):3240-3255.

20.

Recent evolution of the salivary mucin MUC7.

Xu D, Pavlidis P, Thamadilok S, Redwood E, Fox S, Blekhman R, Ruhl S, Gokcumen O.

Sci Rep. 2016 Aug 25;6:31791. doi: 10.1038/srep31791.

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