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Items: 1 to 50 of 95

1.

Biotechnological Potential of Rhodococcus Biodegradative Pathways.

Kim D, Choi KY, Yoo M, Zylstra GJ, Kim E.

J Microbiol Biotechnol. 2018 Jul 28;28(7):1037-1051. doi: 10.4014/jmb.1712.12017. Review.

2.

Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers.

Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae JC, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, Tiedje JM, Upham BL, Hashsham SA.

J Environ Manage. 2017 Aug 1;198(Pt 1):213-220. doi: 10.1016/j.jenvman.2017.04.079. Epub 2017 Apr 29.

3.

Draft Genome Sequence of the Versatile Alkane-Degrading Bacterium Aquabacterium sp. Strain NJ1.

Masuda H, Shiwa Y, Yoshikawa H, Zylstra GJ.

Genome Announc. 2014 Dec 4;2(6). pii: e01271-14. doi: 10.1128/genomeA.01271-14.

4.

Genetic evidence for a molybdopterin-containing tellurate reductase.

Theisen J, Zylstra GJ, Yee N.

Appl Environ Microbiol. 2013 May;79(10):3171-5. doi: 10.1128/AEM.03996-12. Epub 2013 Mar 8.

5.

Biodegradation of tetrahydrofuran and 1,4-dioxane by soluble diiron monooxygenase in Pseudonocardia sp. strain ENV478.

Masuda H, McClay K, Steffan RJ, Zylstra GJ.

J Mol Microbiol Biotechnol. 2012;22(5):312-6. doi: 10.1159/000343817. Epub 2012 Nov 6.

PMID:
23147387
6.

Genome sequence of n-alkane-degrading Hydrocarboniphaga effusa strain AP103T (ATCC BAA-332T).

Chang HK, Zylstra GJ, Chae JC.

J Bacteriol. 2012 Sep;194(18):5120. doi: 10.1128/JB.01017-12.

7.

Draft genome sequence and comparative analysis of the superb aromatic-hydrocarbon degrader Rhodococcus sp. strain DK17.

Yoo M, Kim D, Choi KY, Chae JC, Zylstra GJ, Kim E.

J Bacteriol. 2012 Aug;194(16):4440. doi: 10.1128/JB.00844-12.

8.

Characterization of three propane-inducible oxygenases in Mycobacterium sp. strain ENV421.

Masuda H, McClay K, Steffan RJ, Zylstra GJ.

Lett Appl Microbiol. 2012 Sep;55(3):175-81. doi: 10.1111/j.1472-765X.2012.03290.x. Epub 2012 Jul 31.

9.

Differential degradation of bicyclics with aromatic and alicyclic rings by Rhodococcus sp. strain DK17.

Kim D, Yoo M, Choi KY, Kang BS, Kim TK, Hong SG, Zylstra GJ, Kim E.

Appl Environ Microbiol. 2011 Dec;77(23):8280-7. doi: 10.1128/AEM.06359-11. Epub 2011 Sep 30.

10.

The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation.

Callaghan AV, Morris BE, Pereira IA, McInerney MJ, Austin RN, Groves JT, Kukor JJ, Suflita JM, Young LY, Zylstra GJ, Wawrik B.

Environ Microbiol. 2012 Jan;14(1):101-13. doi: 10.1111/j.1462-2920.2011.02516.x. Epub 2011 Jun 8.

PMID:
21651686
11.

Biphenyl hydroxylation enhanced by an engineered o-xylene dioxygenase from Rhodococcus sp. strain DK17.

Yoo M, Kim D, Zylstra GJ, Kang BS, Kim E.

Res Microbiol. 2011 Sep;162(7):724-8. doi: 10.1016/j.resmic.2011.04.013. Epub 2011 Apr 30.

PMID:
21575716
12.

Benzylic and aryl hydroxylations of m-xylene by o-xylene dioxygenase from Rhodococcus sp. strain DK17.

Kim D, Choi KY, Yoo M, Choi JN, Lee CH, Zylstra GJ, Kang BS, Kim E.

Appl Microbiol Biotechnol. 2010 May;86(6):1841-7. doi: 10.1007/s00253-009-2418-5. Epub 2010 Jan 15.

PMID:
20082074
13.

Aromatic hydroxylation of indan by o-xylene-degrading Rhodococcus sp. strain DK17.

Kim D, Lee CH, Choi JN, Choi KY, Zylstra GJ, Kim E.

Appl Environ Microbiol. 2010 Jan;76(1):375-7. doi: 10.1128/AEM.01745-09. Epub 2009 Oct 30.

14.

DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment.

Sul WJ, Park J, Quensen JF 3rd, Rodrigues JL, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM.

Appl Environ Microbiol. 2009 Sep;75(17):5501-6. doi: 10.1128/AEM.00121-09. Epub 2009 Jul 31.

15.

Involvement of two transport systems and a specific porin in the uptake of phthalate by Burkholderia spp.

Chang HK, Dennis JJ, Zylstra GJ.

J Bacteriol. 2009 Jul;191(14):4671-3. doi: 10.1128/JB.00377-09. Epub 2009 May 8.

16.

Degradation of phenol via phenylphosphate and carboxylation to 4-hydroxybenzoate by a newly isolated strain of the sulfate-reducing bacterium Desulfobacterium anilini.

Ahn YB, Chae JC, Zylstra GJ, Häggblom MM.

Appl Environ Microbiol. 2009 Jul;75(13):4248-53. doi: 10.1128/AEM.00203-09. Epub 2009 May 1.

17.

Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz[a]anthracene.

Schuler L, Jouanneau Y, Chadhain SM, Meyer C, Pouli M, Zylstra GJ, Hols P, Agathos SN.

Appl Microbiol Biotechnol. 2009 Jun;83(3):465-75. doi: 10.1007/s00253-009-1858-2. Epub 2009 Jan 27.

18.

Trisindoline synthesis and anticancer activity.

Yoo M, Choi SU, Choi KY, Yon GH, Chae JC, Kim D, Zylstra GJ, Kim E.

Biochem Biophys Res Commun. 2008 Nov 7;376(1):96-9. doi: 10.1016/j.bbrc.2008.08.092. Epub 2008 Aug 28.

PMID:
18760995
19.

Examination and expansion of the substrate range of m-hydroxybenzoate hydroxylase.

Chang HK, Zylstra GJ.

Biochem Biophys Res Commun. 2008 Jun 20;371(1):149-53. doi: 10.1016/j.bbrc.2008.04.032. Epub 2008 Apr 14.

PMID:
18417078
20.

Identification of functionally important amino acids in a novel indigo-producing oxygenase from Rhodococcus sp. strain T104.

Kwon NR, Chae JC, Choi KY, Yoo M, Zylstra GJ, Kim YM, Kang BS, Kim E.

Appl Microbiol Biotechnol. 2008 Jun;79(3):417-22. doi: 10.1007/s00253-008-1445-y. Epub 2008 Apr 11.

PMID:
18404265
21.

Identification of genes coding for hydrolytic dehalogenation in the metagenome derived from a denitrifying 4-chlorobenzoate degrading consortium.

Chae JC, Song B, Zylstra GJ.

FEMS Microbiol Lett. 2008 Apr;281(2):203-9. doi: 10.1111/j.1574-6968.2008.01106.x. Epub 2008 Mar 18.

22.

Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126.

Schuler L, Ní Chadhain SM, Jouanneau Y, Meyer C, Zylstra GJ, Hols P, Agathos SN.

Appl Environ Microbiol. 2008 Feb;74(4):1050-7. Epub 2007 Dec 21.

23.

Anaerobic alkane-degrading strain AK-01 contains two alkylsuccinate synthase genes.

Callaghan AV, Wawrik B, Ní Chadhain SM, Young LY, Zylstra GJ.

Biochem Biophys Res Commun. 2008 Feb 1;366(1):142-8. Epub 2007 Nov 29.

PMID:
18053803
25.

Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1.

Chadhain SM, Moritz EM, Kim E, Zylstra GJ.

J Ind Microbiol Biotechnol. 2007 Sep;34(9):605-13. Epub 2007 Jul 24.

PMID:
17647036
26.

Comparative analysis of the catechol 2,3-dioxygenase gene locus in thermoacidophilic archaeon Sulfolobus solfataricus strain 98/2.

Chae JC, Kim E, Bini E, Zylstra GJ.

Biochem Biophys Res Commun. 2007 Jun 8;357(3):815-9. Epub 2007 Apr 16.

PMID:
17451650
27.

Requirement of duplicated operons for maximal metabolism of phthalate by Rhodococcus sp. strain DK17.

Choi KY, Kim D, Chae JC, Zylstra GJ, Kim E.

Biochem Biophys Res Commun. 2007 Jun 8;357(3):766-71. Epub 2007 Apr 10.

PMID:
17449009
28.

Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements.

Yano H, Garruto CE, Sota M, Ohtsubo Y, Nagata Y, Zylstra GJ, Williams PA, Tsuda M.

J Mol Biol. 2007 May 25;369(1):11-26. Epub 2007 Mar 14.

PMID:
17408691
29.

Biogeography of actinomycete communities and type II polyketide synthase genes in soils collected in New Jersey and Central Asia.

Wawrik B, Kutliev D, Abdivasievna UA, Kukor JJ, Zylstra GJ, Kerkhof L.

Appl Environ Microbiol. 2007 May;73(9):2982-9. Epub 2007 Mar 2.

30.

Profiling mechanisms of alkane hydroxylase activity in vivo using the diagnostic substrate norcarane.

Rozhkova-Novosad EA, Chae JC, Zylstra GJ, Bertrand EM, Alexander-Ozinskas M, Deng D, Moe LA, van Beilen JB, Danahy M, Groves JT, Austin RN.

Chem Biol. 2007 Feb;14(2):165-72.

31.

Potential for mercury reduction by microbes in the high arctic.

Poulain AJ, Ní Chadhain SM, Ariya PA, Amyot M, Garcia E, Campbell PG, Zylstra GJ, Barkay T.

Appl Environ Microbiol. 2007 Apr;73(7):2230-8. Epub 2007 Feb 9. Erratum in: Appl Environ Microbiol. 2007 Jun;73(11):3769.

32.

The arsenite oxidase genes (aroAB) in novel chemoautotrophic arsenite oxidizers.

Rhine ED, Ní Chadhain SM, Zylstra GJ, Young LY.

Biochem Biophys Res Commun. 2007 Mar 16;354(3):662-7. Epub 2007 Jan 9.

PMID:
17257587
33.

Functional identification of p-cumate operons in the terpene-degrading Rhodococcus sp. strain T104.

Bae HW, Kim D, Choi KY, Kwon NR, Chae JC, Zylstra GJ, Koh SC, Lee CH, Kim E.

FEMS Microbiol Lett. 2007 Jan;266(1):54-9.

34.

Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1.

Yu CL, Liu W, Ferraro DJ, Brown EN, Parales JV, Ramaswamy S, Zylstra GJ, Gibson DT, Parales RE.

J Ind Microbiol Biotechnol. 2007 Apr;34(4):311-24. Epub 2007 Jan 9.

PMID:
17211635
35.

Benzoate catabolite repression of the phthalate degradation pathway in Rhodococcus sp. strain DK17.

Choi KY, Zylstra GJ, Kim E.

Appl Environ Microbiol. 2007 Feb;73(4):1370-4. Epub 2006 Dec 8.

36.
37.

Analysis of mercuric reductase (merA) gene diversity in an anaerobic mercury-contaminated sediment enrichment.

Ní Chadhain SM, Schaefer JK, Crane S, Zylstra GJ, Barkay T.

Environ Microbiol. 2006 Oct;8(10):1746-52.

PMID:
16958755
38.

Biodegradation of ether pollutants by Pseudonocardia sp. strain ENV478.

Vainberg S, McClay K, Masuda H, Root D, Condee C, Zylstra GJ, Steffan RJ.

Appl Environ Microbiol. 2006 Aug;72(8):5218-24.

39.

Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation.

Ní Chadhain SM, Norman RS, Pesce KV, Kukor JJ, Zylstra GJ.

Appl Environ Microbiol. 2006 Jun;72(6):4078-87.

40.

Characterization of two small cryptic plasmids from Pseudomonas sp. strain S-47.

Chae JC, Kim CK, Zylstra GJ.

Biochem Biophys Res Commun. 2005 Dec 23;338(3):1600-6. Epub 2005 Nov 2.

PMID:
16288725
41.

Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17.

Choi KY, Kim D, Sul WJ, Chae JC, Zylstra GJ, Kim YM, Kim E.

FEMS Microbiol Lett. 2005 Nov 15;252(2):207-13. Epub 2005 Sep 12.

42.

Isolation and characterization of a rhodococcus species strain able to grow on ortho- and para-xylene.

Jang JY, Kim D, Bae HW, Choi KY, Chae JC, Zylstra GJ, Kim YM, Kim E.

J Microbiol. 2005 Aug;43(4):325-30.

PMID:
16145546
43.

Identification of unique type II polyketide synthase genes in soil.

Wawrik B, Kerkhof L, Zylstra GJ, Kukor JJ.

Appl Environ Microbiol. 2005 May;71(5):2232-8.

44.

Identification of two-component regulatory genes involved in o-xylene degradation by Rhodococcus sp. strain DK17.

Kim D, Chae JC, Zylstra GJ, Sohn HY, Kwon GS, Kim E.

J Microbiol. 2005 Feb;43(1):49-53.

45.

Catabolic role of a three-component salicylate oxygenase from Sphingomonas yanoikuyae B1 in polycyclic aromatic hydrocarbon degradation.

Cho O, Choi KY, Zylstra GJ, Kim YS, Kim SK, Lee JH, Sohn HY, Kwon GS, Kim YM, Kim E.

Biochem Biophys Res Commun. 2005 Feb 18;327(3):656-62.

PMID:
15649397
46.

Functional characterization and molecular modeling of methylcatechol 2,3-dioxygenase from o-xylene-degrading Rhodococcus sp. strain DK17.

Kim D, Chae JC, Jang JY, Zylstra GJ, Kim YM, Kang BS, Kim E.

Biochem Biophys Res Commun. 2005 Jan 28;326(4):880-6.

PMID:
15607751
47.

Assimilation of nitrogen from nitrite and trinitrotoluene in Pseudomonas putida JLR11.

Caballero A, Esteve-Núñez A, Zylstra GJ, Ramos JL.

J Bacteriol. 2005 Jan;187(1):396-9.

48.

Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17.

Kim D, Chae JC, Zylstra GJ, Kim YS, Kim SK, Nam MH, Kim YM, Kim E.

Appl Environ Microbiol. 2004 Dec;70(12):7086-92.

50.

Hydrocarboniphaga effusa gen. nov., sp. nov., a novel member of the gamma-Proteobacteria active in alkane and aromatic hydrocarbon degradation.

Palleroni NJ, Port AM, Chang HK, Zylstra GJ.

Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1203-7.

PMID:
15280292

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