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The fading boundaries between patient and environmental routes of triazole resistance selection in Aspergillus fumigatus.

Buil JB, Hare RK, Zwaan BJ, Arendrup MC, Melchers WJG, Verweij PE.

PLoS Pathog. 2019 Aug 22;15(8):e1007858. doi: 10.1371/journal.ppat.1007858. eCollection 2019 Aug. No abstract available.


The genome of the live-bearing fish Heterandria formosa implicates a role of conserved vertebrate genes in the evolution of placental fish.

van Kruistum H, van den Heuvel J, Travis J, Kraaijeveld K, Zwaan BJ, Groenen MAM, Megens HJ, Pollux BJA.

BMC Evol Biol. 2019 Jul 26;19(1):156. doi: 10.1186/s12862-019-1484-2.


Facilitators of adaptation and antifungal resistance mechanisms in clinically relevant fungi.

Hokken MWJ, Zwaan BJ, Melchers WJG, Verweij PE.

Fungal Genet Biol. 2019 Nov;132:103254. doi: 10.1016/j.fgb.2019.103254. Epub 2019 Jul 19. Review.


Environmental Hotspots for Azole Resistance Selection of Aspergillus fumigatus, the Netherlands.

Schoustra SE, Debets AJM, Rijs AJMM, Zhang J, Snelders E, Leendertse PC, Melchers WJG, Rietveld AG, Zwaan BJ, Verweij PE.

Emerg Infect Dis. 2019 Jul;25(7):1347-1353. doi: 10.3201/eid2507.181625.


Enrichment of G4DNA and a Large Inverted Repeat Coincide in the Mitochondrial Genomes of Termitomyces.

Nieuwenhuis M, van de Peppel LJJ, Bakker FT, Zwaan BJ, Aanen DK.

Genome Biol Evol. 2019 Jul 1;11(7):1857-1869. doi: 10.1093/gbe/evz122.


Relevance of heterokaryosis for adaptation and azole-resistance development in Aspergillus fumigatus.

Zhang J, Snelders EE, Zwaan BJ, Schoustra SE, Kuijper EJ, Arendrup MC, Melchers WJG, Verweij PE, Debets AJM.

Proc Biol Sci. 2019 Feb 13;286(1896):20182886. doi: 10.1098/rspb.2018.2886.


Adaptation to developmental diet influences the response to selection on age at reproduction in the fruit fly.

May CM, van den Heuvel J, Doroszuk A, Hoedjes KM, Flatt T, Zwaan BJ.

J Evol Biol. 2019 May;32(5):425-437. doi: 10.1111/jeb.13425. Epub 2019 Feb 27.


Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole.

Hokken MWJ, Zoll J, Coolen JPM, Zwaan BJ, Verweij PE, Melchers WJG.

BMC Genomics. 2019 Jan 9;20(1):28. doi: 10.1186/s12864-018-5255-z.


Selective Survival of Embryos Can Explain DNA Methylation Signatures of Adverse Prenatal Environments.

Tobi EW, van den Heuvel J, Zwaan BJ, Lumey LH, Heijmans BT, Uller T.

Cell Rep. 2018 Dec 4;25(10):2660-2667.e4. doi: 10.1016/j.celrep.2018.11.023.


[Polymicrobial infections: ecosystems with special properties].

de Vos MGJ, de Visser JAGM, Rossen JWA, Zwaan BJ.

Ned Tijdschr Geneeskd. 2018;162:D2224. Dutch.


Strong phenotypic plasticity limits potential for evolutionary responses to climate change.

Oostra V, Saastamoinen M, Zwaan BJ, Wheat CW.

Nat Commun. 2018 Mar 8;9(1):1005. doi: 10.1038/s41467-018-03384-9.


Genetic responsiveness of African buffalo to environmental stressors: A role for epigenetics in balancing autosomal and sex chromosome interactions?

van Hooft P, Dougherty ER, Getz WM, Greyling BJ, Zwaan BJ, Bastos ADS.

PLoS One. 2018 Feb 7;13(2):e0191481. doi: 10.1371/journal.pone.0191481. eCollection 2018.


Local Fitness Landscapes Predict Yeast Evolutionary Dynamics in Directionally Changing Environments.

Gorter FA, Aarts MGM, Zwaan BJ, de Visser JAGM.

Genetics. 2018 Jan;208(1):307-322. doi: 10.1534/genetics.117.300519. Epub 2017 Nov 15.


Genomics of Adaptation Depends on the Rate of Environmental Change in Experimental Yeast Populations.

Gorter FA, Derks MFL, van den Heuvel J, Aarts MGM, Zwaan BJ, de Ridder D, de Visser JAGM.

Mol Biol Evol. 2017 Oct 1;34(10):2613-2626. doi: 10.1093/molbev/msx185.


Evolution of cross-resistance to medical triazoles in Aspergillus fumigatus through selection pressure of environmental fungicides.

Zhang J, van den Heuvel J, Debets AJM, Verweij PE, Melchers WJG, Zwaan BJ, Schoustra SE.

Proc Biol Sci. 2017 Sep 27;284(1863). pii: 20170635. doi: 10.1098/rspb.2017.0635.


Pervasive gene expression responses to a fluctuating diet in Drosophila melanogaster: The importance of measuring multiple traits to decouple potential mediators of life span and reproduction.

Zandveld J, van den Heuvel J, Mulder M, Brakefield PM, Kirkwood TBL, Shanley DP, Zwaan BJ.

Evolution. 2017 Nov;71(11):2572-2583. doi: 10.1111/evo.13327. Epub 2017 Sep 25.


Relating past and present diet to phenotypic and transcriptomic variation in the fruit fly.

May CM, Zwaan BJ.

BMC Genomics. 2017 Aug 22;18(1):640. doi: 10.1186/s12864-017-3968-z.


A Novel Environmental Azole Resistance Mutation in Aspergillus fumigatus and a Possible Role of Sexual Reproduction in Its Emergence.

Zhang J, Snelders E, Zwaan BJ, Schoustra SE, Meis JF, van Dijk K, Hagen F, van der Beek MT, Kampinga GA, Zoll J, Melchers WJG, Verweij PE, Debets AJM.

MBio. 2017 Jun 27;8(3). pii: e00791-17. doi: 10.1128/mBio.00791-17.


Both overlapping and independent mechanisms determine how diet and insulin-ligand knockouts extend lifespan of Drosophila melanogaster.

Zandveld J, van den Heuvel J, Zwaan BJ, Piper MDW.

NPJ Aging Mech Dis. 2017 Feb 20;3:4. doi: 10.1038/s41514-017-0004-0. eCollection 2017.


Experimental evolution to increase the efficacy of the entomopathogenic fungus Beauveria bassiana against malaria mosquitoes: Effects on mycelial growth and virulence.

Valero-Jiménez CA, van Kan JAL, Koenraadt CJM, Zwaan BJ, Schoustra SE.

Evol Appl. 2017 Apr 14;10(5):433-443. doi: 10.1111/eva.12451. eCollection 2017 Jun.


A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana.

Nowell RW, Elsworth B, Oostra V, Zwaan BJ, Wheat CW, Saastamoinen M, Saccheri IJ, Van't Hof AE, Wasik BR, Connahs H, Aslam ML, Kumar S, Challis RJ, Monteiro A, Brakefield PM, Blaxter M.

Gigascience. 2017 Jul 1;6(7):1-7. doi: 10.1093/gigascience/gix035.


Growing more positive with age: The relationship between reproduction and survival in aging flies.

van den Heuvel J, Zandveld J, Brakefield PM, Kirkwood TBL, Shanley DP, Zwaan BJ.

Exp Gerontol. 2017 Apr;90:34-42. doi: 10.1016/j.exger.2017.01.016. Epub 2017 Jan 22.


Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes.

Valero-Jiménez CA, Faino L, Spring In't Veld D, Smit S, Zwaan BJ, van Kan JA.

BMC Genomics. 2016 Dec 1;17(1):986.


In-host adaptation and acquired triazole resistance in Aspergillus fumigatus: a dilemma for clinical management.

Verweij PE, Zhang J, Debets AJM, Meis JF, van de Veerdonk FL, Schoustra SE, Zwaan BJ, Melchers WJG.

Lancet Infect Dis. 2016 Nov;16(11):e251-e260. doi: 10.1016/S1473-3099(16)30138-4. Epub 2016 Sep 13. Review.


Dynamics of Adaptation in Experimental Yeast Populations Exposed to Gradual and Abrupt Change in Heavy Metal Concentration.

Gorter FA, Aarts MM, Zwaan BJ, de Visser JA.

Am Nat. 2016 Jan;187(1):110-9. doi: 10.1086/684104.


Genes involved in virulence of the entomopathogenic fungus Beauveria bassiana.

Valero-Jiménez CA, Wiegers H, Zwaan BJ, Koenraadt CJ, van Kan JA.

J Invertebr Pathol. 2016 Jan;133:41-9. doi: 10.1016/j.jip.2015.11.011. Epub 2015 Nov 30. Review.


Asexual sporulation facilitates adaptation: The emergence of azole resistance in Aspergillus fumigatus.

Zhang J, Debets AJ, Verweij PE, Melchers WJ, Zwaan BJ, Schoustra SE.

Evolution. 2015 Oct;69(10):2573-86. doi: 10.1111/evo.12763. Epub 2015 Sep 16.


The effect of developmental nutrition on life span and fecundity depends on the adult reproductive environment in Drosophila melanogaster.

May CM, Doroszuk A, Zwaan BJ.

Ecol Evol. 2015 Mar;5(6):1156-68. doi: 10.1002/ece3.1389. Epub 2015 Feb 18.


Natural variation in virulence of the entomopathogenic fungus Beauveria bassiana against malaria mosquitoes.

Valero-Jiménez CA, Debets AJ, van Kan JA, Schoustra SE, Takken W, Zwaan BJ, Koenraadt CJ.

Malar J. 2014 Dec 6;13:479. doi: 10.1186/1475-2875-13-479.


The plastic fly: the effect of sustained fluctuations in adult food supply on life-history traits.

van den Heuvel J, Zandveld J, Mulder M, Brakefield PM, Kirkwood TB, Shanley DP, Zwaan BJ.

J Evol Biol. 2014 Nov;27(11):2322-33. doi: 10.1111/jeb.12444.


Adaptive developmental plasticity: compartmentalized responses to environmental cues and to corresponding internal signals provide phenotypic flexibility.

Mateus AR, Marques-Pita M, Oostra V, Lafuente E, Brakefield PM, Zwaan BJ, Beldade P.

BMC Biol. 2014 Nov 21;12:97. doi: 10.1186/s12915-014-0097-x.


Positive selection of deleterious alleles through interaction with a sex-ratio suppressor gene in African Buffalo: a plausible new mechanism for a high frequency anomaly.

van Hooft P, Greyling BJ, Getz WM, van Helden PD, Zwaan BJ, Bastos AD.

PLoS One. 2014 Nov 5;9(11):e111778. doi: 10.1371/journal.pone.0111778. eCollection 2014.


Ecdysteroid hormones link the juvenile environment to alternative adult life histories in a seasonal insect.

Oostra V, Mateus AR, van der Burg KR, Piessens T, van Eijk M, Brakefield PM, Beldade P, Zwaan BJ.

Am Nat. 2014 Sep;184(3):E79-92. doi: 10.1086/677260. Epub 2014 Jul 31.


On the fate of seasonally plastic traits in a rainforest butterfly under relaxed selection.

Oostra V, Brakefield PM, Hiltemann Y, Zwaan BJ, Brattström O.

Ecol Evol. 2014 Jul;4(13):2654-67. doi: 10.1002/ece3.1114. Epub 2014 Jun 4.


Does autophagy mediate age-dependent effect of dietary restriction responses in the filamentous fungus Podospora anserina?

van Diepeningen AD, Engelmoer DJ, Sellem CH, Huberts DH, Slakhorst SM, Sainsard-Chanet A, Zwaan BJ, Hoekstra RF, Debets AJ.

Philos Trans R Soc Lond B Biol Sci. 2014 Jul 5;369(1646):20130447. doi: 10.1098/rstb.2013.0447.


Genotype×environment interaction QTL mapping in plants: lessons from Arabidopsis.

El-Soda M, Malosetti M, Zwaan BJ, Koornneef M, Aarts MG.

Trends Plant Sci. 2014 Jun;19(6):390-8. doi: 10.1016/j.tplants.2014.01.001. Epub 2014 Jan 31. Review.


Socioeconomic status determines sex-dependent survival of human offspring.

van Bodegom D, Rozing MP, May L, Meij HJ, Thomése F, Zwaan BJ, Westendorp RG.

Evol Med Public Health. 2013 Jan;2013(1):37-45. doi: 10.1093/emph/eot002. Epub 2013 Mar 1.


Quantitative genetic analysis of responses to larval food limitation in a polyphenic butterfly indicates environment- and trait-specific effects.

Saastamoinen M, Brommer JE, Brakefield PM, Zwaan BJ.

Ecol Evol. 2013 Sep;3(10):3576-89. doi: 10.1002/ece3.718. Epub 2013 Sep 2.


Predictive modelling of complex agronomic and biological systems.

Keurentjes JJ, Molenaar J, Zwaan BJ.

Plant Cell Environ. 2013 Sep;36(9):1700-10. doi: 10.1111/pce.12156. Epub 2013 Jul 4. Review. Erratum in: Plant Cell Environ. 2013 Oct;36(10):1910.


The scent of inbreeding: a male sex pheromone betrays inbred males.

van Bergen E, Brakefield PM, Heuskin S, Zwaan BJ, Nieberding CM.

Proc Biol Sci. 2013 Mar 6;280(1758):20130102. doi: 10.1098/rspb.2013.0102. Print 2013 May 7.


The predictive adaptive response: modeling the life-history evolution of the butterfly Bicyclus anynana in seasonal environments.

van den Heuvel J, Saastamoinen M, Brakefield PM, Kirkwood TB, Zwaan BJ, Shanley DP.

Am Nat. 2013 Feb;181(2):E28-42. doi: 10.1086/668818. Epub 2013 Jan 14.


Footprints of selection in wild populations of Bicyclus anynana along a latitudinal cline.

de Jong MA, Collins S, Beldade P, Brakefield PM, Zwaan BJ.

Mol Ecol. 2013 Jan;22(2):341-53. doi: 10.1111/mec.12114. Epub 2012 Nov 21.


Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension.

Doroszuk A, Jonker MJ, Pul N, Breit TM, Zwaan BJ.

BMC Genomics. 2012 May 4;13:167. doi: 10.1186/1471-2164-13-167.


Transcriptional profiling of human familial longevity indicates a role for ASF1A and IL7R.

Passtoors WM, Boer JM, Goeman JJ, Akker EB, Deelen J, Zwaan BJ, Scarborough A, Breggen Rv, Vossen RH, Houwing-Duistermaat JJ, Ommen GJ, Westendorp RG, van Heemst D, de Craen AJ, White AJ, Gunn DA, Beekman M, Slagboom PE.

PLoS One. 2012;7(1):e27759. doi: 10.1371/journal.pone.0027759. Epub 2012 Jan 11. Erratum in: PLoS One. 2012;7(5): doi/10.1371/annotation/d4d3b1fb-35e0-4c4d-89bc-e6a839504e54.


Mitochondrial DNA signature for range-wide populations of Bicyclus anynana suggests a rapid expansion from recent refugia.

de Jong MA, Wahlberg N, van Eijk M, Brakefield PM, Zwaan BJ.

PLoS One. 2011;6(6):e21385. doi: 10.1371/journal.pone.0021385. Epub 2011 Jun 22.


Changed gene expression for candidate ageing genes in long-lived Bicyclus anynana butterflies.

Pijpe J, Pul N, van Duijn S, Brakefield PM, Zwaan BJ.

Exp Gerontol. 2011 Jun;46(6):426-34. doi: 10.1016/j.exger.2010.11.033. Epub 2010 Nov 28.


Predictive adaptive responses: Condition-dependent impact of adult nutrition and flight in the tropical butterfly Bicyclus anynana.

Saastamoinen M, van der Sterren D, Vastenhout N, Zwaan BJ, Brakefield PM.

Am Nat. 2010 Dec;176(6):686-98. doi: 10.1086/657038. Epub 2010 Oct 18.


Translating environmental gradients into discontinuous reaction norms via hormone signalling in a polyphenic butterfly.

Oostra V, de Jong MA, Invergo BM, Kesbeke F, Wende F, Brakefield PM, Zwaan BJ.

Proc Biol Sci. 2011 Mar 7;278(1706):789-97. doi: 10.1098/rspb.2010.1560. Epub 2010 Sep 8.


Evolution of sexual dimorphism in the Lepidoptera.

Allen CE, Zwaan BJ, Brakefield PM.

Annu Rev Entomol. 2011;56:445-64. doi: 10.1146/annurev-ento-120709-144828. Review.


Injection of chemicals into pupae of the African butterfly Bicyclus anynana.

Brakefield PM, Beldade P, Zwaan BJ.

Cold Spring Harb Protoc. 2009 May;2009(5):pdb.prot5215. doi: 10.1101/pdb.prot5215. No abstract available.


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