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Characterisation of the ERF102 to ERF105 genes of Arabidopsis thaliana and their role in the response to cold stress.

Illgen S, Zintl S, Zuther E, Hincha DK, Schmülling T.

Plant Mol Biol. 2020 Mar 18. doi: 10.1007/s11103-020-00993-1. [Epub ahead of print]


Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant Arabidopsis thaliana.

Schaarschmidt S, Fischer A, Zuther E, Hincha DK.

Int J Mol Sci. 2020 Mar 3;21(5). pii: E1720. doi: 10.3390/ijms21051720.


Transcriptional and Post-Transcriptional Regulation and Transcriptional Memory of Chromatin Regulators in Response to Low Temperature.

Vyse K, Faivre L, Romich M, Pagter M, Schubert D, Hincha DK, Zuther E.

Front Plant Sci. 2020 Feb 7;11:39. doi: 10.3389/fpls.2020.00039. eCollection 2020.


Repair of sub-lethal freezing damage in leaves of Arabidopsis thaliana.

Vyse K, Penzlin J, Sergeant K, Hincha DK, Arora R, Zuther E.

BMC Plant Biol. 2020 Jan 20;20(1):35. doi: 10.1186/s12870-020-2247-3.


Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field.

Lawas LMF, Erban A, Kopka J, Jagadish SVK, Zuther E, Hincha DK.

Gigascience. 2019 Aug 1;8(8). pii: giz102. doi: 10.1093/gigascience/giz102.


Transcriptome analysis reveals potential roles of a barley ASR gene that confers stress tolerance in transgenic rice.

Pérez-Díaz J, Pérez-Díaz JR, Medeiros DB, Zuther E, Hong CY, Nunes-Nesi A, Hincha DK, Ruiz-Lara S, Casaretto JA.

J Plant Physiol. 2019 Jul;238:29-39. doi: 10.1016/j.jplph.2019.05.005. Epub 2019 May 17.


Deacclimation after cold acclimation-a crucial, but widely neglected part of plant winter survival.

Vyse K, Pagter M, Zuther E, Hincha DK.

J Exp Bot. 2019 Sep 24;70(18):4595-4604. doi: 10.1093/jxb/erz229.


Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions.

Lawas LMF, Li X, Erban A, Kopka J, Jagadish SVK, Zuther E, Hincha DK.

Gigascience. 2019 May 1;8(5). pii: giz050. doi: 10.1093/gigascience/giz050.


Induced, Imprinted, and Primed Responses to Changing Environments: Does Metabolism Store and Process Information?

Schwachtje J, Whitcomb SJ, Firmino AAP, Zuther E, Hincha DK, Kopka J.

Front Plant Sci. 2019 Feb 13;10:106. doi: 10.3389/fpls.2019.00106. eCollection 2019.


Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana.

Takahashi D, Gorka M, Erban A, Graf A, Kopka J, Zuther E, Hincha DK.

Sci Rep. 2019 Feb 19;9(1):2289. doi: 10.1038/s41598-019-38688-3.


Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat.

Casartelli A, Melino VJ, Baumann U, Riboni M, Suchecki R, Jayasinghe NS, Mendis H, Watanabe M, Erban A, Zuther E, Hoefgen R, Roessner U, Okamoto M, Heuer S.

Plant Mol Biol. 2019 Mar;99(4-5):477-497. doi: 10.1007/s11103-019-00831-z. Epub 2019 Feb 5.


Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis.

Zuther E, Schaarschmidt S, Fischer A, Erban A, Pagter M, Mubeen U, Giavalisco P, Kopka J, Sprenger H, Hincha DK.

Plant Cell Environ. 2019 Mar;42(3):854-873. doi: 10.1111/pce.13502. Epub 2019 Jan 28.


Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species.

Zuther E, Lee YP, Erban A, Kopka J, Hincha DK.

Adv Exp Med Biol. 2018;1081:81-98. doi: 10.1007/978-981-13-1244-1_5. Review.


Molecular mechanisms of combined heat and drought stress resilience in cereals.

Lawas LMF, Zuther E, Jagadish SK, Hincha DK.

Curr Opin Plant Biol. 2018 Oct;45(Pt B):212-217. doi: 10.1016/j.pbi.2018.04.002. Epub 2018 Apr 16. Review.


Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.

Beine-Golovchuk O, Firmino AAP, Dąbrowska A, Schmidt S, Erban A, Walther D, Zuther E, Hincha DK, Kopka J.

Plant Physiol. 2018 Mar;176(3):2251-2276. doi: 10.1104/pp.17.01448. Epub 2018 Jan 30.


Metabolite and transcript markers for the prediction of potato drought tolerance.

Sprenger H, Erban A, Seddig S, Rudack K, Thalhammer A, Le MQ, Walther D, Zuther E, Köhl KI, Kopka J, Hincha DK.

Plant Biotechnol J. 2018 Apr;16(4):939-950. doi: 10.1111/pbi.12840. Epub 2017 Oct 17.


Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana.

Pagter M, Alpers J, Erban A, Kopka J, Zuther E, Hincha DK.

BMC Genomics. 2017 Sep 16;18(1):731. doi: 10.1186/s12864-017-4126-3.


Rootstock Sub-Optimal Temperature Tolerance Determines Transcriptomic Responses after Long-Term Root Cooling in Rootstocks and Scions of Grafted Tomato Plants.

Ntatsi G, Savvas D, Papasotiropoulos V, Katsileros A, Zrenner RM, Hincha DK, Zuther E, Schwarz D.

Front Plant Sci. 2017 Jun 8;8:911. doi: 10.3389/fpls.2017.00911. eCollection 2017.


Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles.

Glaubitz U, Li X, Schaedel S, Erban A, Sulpice R, Kopka J, Hincha DK, Zuther E.

Plant Cell Environ. 2017 Jan;40(1):121-137. doi: 10.1111/pce.12850. Epub 2016 Nov 28.


ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.

Bolt S, Zuther E, Zintl S, Hincha DK, Schmülling T.

Plant Cell Environ. 2017 Jan;40(1):108-120. doi: 10.1111/pce.12838. Epub 2016 Nov 28.


Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana.

Schulz E, Tohge T, Zuther E, Fernie AR, Hincha DK.

Sci Rep. 2016 Sep 23;6:34027. doi: 10.1038/srep34027.


The drought response of potato reference cultivars with contrasting tolerance.

Sprenger H, Kurowsky C, Horn R, Erban A, Seddig S, Rudack K, Fischer A, Walther D, Zuther E, Köhl K, Hincha DK, Kopka J.

Plant Cell Environ. 2016 Nov;39(11):2370-2389. doi: 10.1111/pce.12780. Epub 2016 Sep 6.


Natural Variation of Cold Deacclimation Correlates with Variation of Cold-Acclimation of the Plastid Antioxidant System in Arabidopsis thaliana Accessions.

Juszczak I, Cvetkovic J, Zuther E, Hincha DK, Baier M.

Front Plant Sci. 2016 Mar 17;7:305. doi: 10.3389/fpls.2016.00305. eCollection 2016.


Priming and memory of stress responses in organisms lacking a nervous system.

Hilker M, Schwachtje J, Baier M, Balazadeh S, Bäurle I, Geiselhardt S, Hincha DK, Kunze R, Mueller-Roeber B, Rillig MC, Rolff J, Romeis T, Schmülling T, Steppuhn A, van Dongen J, Whitcomb SJ, Wurst S, Zuther E, Kopka J.

Biol Rev Camb Philos Soc. 2016 Nov;91(4):1118-1133. doi: 10.1111/brv.12215. Epub 2015 Aug 20. Review.


High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner.

Glaubitz U, Erban A, Kopka J, Hincha DK, Zuther E.

J Exp Bot. 2015 Oct;66(20):6385-97. doi: 10.1093/jxb/erv352. Epub 2015 Jul 23.


Time-dependent deacclimation after cold acclimation in Arabidopsis thaliana accessions.

Zuther E, Juszczak I, Lee YP, Baier M, Hincha DK.

Sci Rep. 2015 Jul 15;5:12199. doi: 10.1038/srep12199.


Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.

Li X, Lawas LM, Malo R, Glaubitz U, Erban A, Mauleon R, Heuer S, Zuther E, Kopka J, Hincha DK, Jagadish KS.

Plant Cell Environ. 2015 Oct;38(10):2171-92. doi: 10.1111/pce.12545. Epub 2015 May 19.


Natural variation in flavonol and anthocyanin metabolism during cold acclimation in Arabidopsis thaliana accessions.

Schulz E, Tohge T, Zuther E, Fernie AR, Hincha DK.

Plant Cell Environ. 2015 Aug;38(8):1658-72. doi: 10.1111/pce.12518. Epub 2015 Apr 23.


Measuring freezing tolerance: electrolyte leakage and chlorophyll fluorescence assays.

Thalhammer A, Hincha DK, Zuther E.

Methods Mol Biol. 2014;1166:15-24. doi: 10.1007/978-1-4939-0844-8_3.


Plant cold acclimation and freezing tolerance.

Hincha DK, Zuther E.

Methods Mol Biol. 2014;1166:1-6. doi: 10.1007/978-1-4939-0844-8_1. Review.


Changes in free polyamine levels, expression of polyamine biosynthesis genes, and performance of rice cultivars under salt stress: a comparison with responses to drought.

Do PT, Drechsel O, Heyer AG, Hincha DK, Zuther E.

Front Plant Sci. 2014 May 8;5:182. doi: 10.3389/fpls.2014.00182. eCollection 2014.


Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling.

Degenkolbe T, Do PT, Kopka J, Zuther E, Hincha DK, Köhl KI.

PLoS One. 2013 May 22;8(5):e63637. doi: 10.1371/journal.pone.0063637. Print 2013.


Dissecting rice polyamine metabolism under controlled long-term drought stress.

Do PT, Degenkolbe T, Erban A, Heyer AG, Kopka J, Köhl KI, Hincha DK, Zuther E.

PLoS One. 2013;8(4):e60325. doi: 10.1371/journal.pone.0060325. Epub 2013 Apr 8.


Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana.

Degenkolbe T, Giavalisco P, Zuther E, Seiwert B, Hincha DK, Willmitzer L.

Plant J. 2012 Dec;72(6):972-82. doi: 10.1111/tpj.12007. Epub 2012 Oct 19.


Conducting molecular biomarker discovery studies in plants.

Schudoma C, Steinfath M, Sprenger H, van Dongen JT, Hincha D, Zuther E, Geigenberger P, Kopka J, Köhl K, Walther D.

Methods Mol Biol. 2012;918:127-50. doi: 10.1007/978-1-61779-995-2_10. Review.


Comparison of freezing tolerance, compatible solutes and polyamines in geographically diverse collections of Thellungiella sp. and Arabidopsis thaliana accessions.

Lee YP, Babakov A, de Boer B, Zuther E, Hincha DK.

BMC Plant Biol. 2012 Aug 3;12:131. doi: 10.1186/1471-2229-12-131.


Clinal variation in the non-acclimated and cold-acclimated freezing tolerance of Arabidopsis thaliana accessions.

Zuther E, Schulz E, Childs LH, Hincha DK.

Plant Cell Environ. 2012 Oct;35(10):1860-78. doi: 10.1111/j.1365-3040.2012.02522.x. Epub 2012 May 10.


Evidence against sink limitation by the sucrose-to-starch route in potato plants expressing fructosyltransferases.

Zuther E, Hoermiller II, Heyer AG.

Physiol Plant. 2011 Oct;143(2):115-25. doi: 10.1111/j.1399-3054.2011.01495.x. Epub 2011 Jul 19.


Natural variation in the freezing tolerance of Arabidopsis thaliana: effects of RNAi-induced CBF depletion and QTL localisation vary among accessions.

Gery C, Zuther E, Schulz E, Legoupi J, Chauveau A, McKhann H, Hincha DK, Téoulé E.

Plant Sci. 2011 Jan;180(1):12-23. doi: 10.1016/j.plantsci.2010.07.010. Epub 2010 Jul 24.


Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis.

Espinoza C, Degenkolbe T, Caldana C, Zuther E, Leisse A, Willmitzer L, Hincha DK, Hannah MA.

PLoS One. 2010 Nov 23;5(11):e14101. doi: 10.1371/journal.pone.0014101.


Expression profiling of rice cultivars differing in their tolerance to long-term drought stress.

Degenkolbe T, Do PT, Zuther E, Repsilber D, Walther D, Hincha DK, Köhl KI.

Plant Mol Biol. 2009 Jan;69(1-2):133-53. doi: 10.1007/s11103-008-9412-7. Epub 2008 Oct 19.


Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana.

McKhann HI, Gery C, Bérard A, Lévêque S, Zuther E, Hincha DK, De Mita S, Brunel D, Téoulé E.

BMC Plant Biol. 2008 Oct 15;8:105. doi: 10.1186/1471-2229-8-105.


Combined metabolomic and genetic approaches reveal a link between the polyamine pathway and albumin 2 in developing pea seeds.

Vigeolas H, Chinoy C, Zuther E, Blessington B, Geigenberger P, Domoney C.

Plant Physiol. 2008 Jan;146(1):74-82. Epub 2007 Nov 16.


Fructans from oat and rye: composition and effects on membrane stability during drying.

Hincha DK, Livingston DP 3rd, Premakumar R, Zuther E, Obel N, Cacela C, Heyer AG.

Biochim Biophys Acta. 2007 Jun;1768(6):1611-9. Epub 2007 Mar 24.


Transport and metabolism of raffinose family oligosaccharides in transgenic potato.

Hannah MA, Zuther E, Buchel K, Heyer AG.

J Exp Bot. 2006;57(14):3801-11. Epub 2006 Oct 18.


The role of raffinose in the cold acclimation response of Arabidopsis thaliana.

Zuther E, Büchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG.

FEBS Lett. 2004 Oct 8;576(1-2):169-73.


Complex nested promoters control tissue-specific expression of acetyl-CoA carboxylase genes in wheat.

Zuther E, Huang S, Jelenska J, Eilenberg H, Arnold EM, Su X, Sirikhachornkit A, Podkowinski J, Zilberstein A, Haselkorn R, Gornicki P.

Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1403-8. Epub 2004 Jan 20.


A photosystem 1 psaFJ-null mutant of the cyanobacterium Synechocystis PCC 6803 expresses the isiAB operon under iron replete conditions.

Jeanjean R, Zuther E, Yeremenko N, Havaux M, Matthijs HC, Hagemann M.

FEBS Lett. 2003 Aug 14;549(1-3):52-6.


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