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Items: 45

1.

Synthetic switches and regulatory circuits in plants.

Andres J, Blomeier T, Zurbriggen MD.

Plant Physiol. 2019 Jan 28. pii: pp.01362.2018. doi: 10.1104/pp.18.01362. [Epub ahead of print] No abstract available.

2.

Phytochrome-Based Extracellular Matrix with Reversibly Tunable Mechanical Properties.

Hörner M, Raute K, Hummel B, Madl J, Creusen G, Thomas OS, Christen EH, Hotz N, Gübeli RJ, Engesser R, Rebmann B, Lauer J, Rolauffs B, Timmer J, Schamel WWA, Pruszak J, Römer W, Zurbriggen MD, Friedrich C, Walther A, Minguet S, Sawarkar R, Weber W.

Adv Mater. 2019 Jan 27:e1806727. doi: 10.1002/adma.201806727. [Epub ahead of print]

PMID:
30687975
3.

Construction of a fusion enzyme for astaxanthin formation and its characterisation in microbial and plant hosts: A new tool for engineering ketocarotenoids.

Nogueira M, Enfissi EMA, Welsch R, Beyer P, Zurbriggen MD, Fraser PD.

Metab Eng. 2019 Mar;52:243-252. doi: 10.1016/j.ymben.2018.12.006. Epub 2018 Dec 20.

4.

Dual-controlled optogenetic system for the rapid down-regulation of protein levels in mammalian cells.

Baaske J, Gonschorek P, Engesser R, Dominguez-Monedero A, Raute K, Fischbach P, Müller K, Cachat E, Schamel WWA, Minguet S, Davies JA, Timmer J, Weber W, Zurbriggen MD.

Sci Rep. 2018 Oct 9;8(1):15024. doi: 10.1038/s41598-018-32929-7.

5.

Generic and reversible opto-trapping of biomolecules.

Beyer HM, Thomas OS, Riegel N, Zurbriggen MD, Weber W, Hörner M.

Acta Biomater. 2018 Oct 1;79:276-282. doi: 10.1016/j.actbio.2018.08.032. Epub 2018 Aug 28.

PMID:
30165200
6.

Long-Day Photoperiod Enhances Jasmonic Acid-Related Plant Defense.

Cagnola JI, Cerdán PD, Pacín M, Andrade A, Rodriguez V, Zurbriggen MD, Legris M, Buchovsky S, Carrillo N, Chory J, Blázquez MA, Alabadi D, Casal JJ.

Plant Physiol. 2018 Sep;178(1):163-173. doi: 10.1104/pp.18.00443. Epub 2018 Aug 1.

PMID:
30068539
7.

Auxin methylation is required for differential growth in Arabidopsis.

Abbas M, Hernández-García J, Pollmann S, Samodelov SL, Kolb M, Friml J, Hammes UZ, Zurbriggen MD, Blázquez MA, Alabadí D.

Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6864-6869. doi: 10.1073/pnas.1806565115. Epub 2018 Jun 13.

8.

A Green-Light-Responsive System for the Control of Transgene Expression in Mammalian and Plant Cells.

Chatelle C, Ochoa-Fernandez R, Engesser R, Schneider N, Beyer HM, Jones AR, Timmer J, Zurbriggen MD, Weber W.

ACS Synth Biol. 2018 May 18;7(5):1349-1358. doi: 10.1021/acssynbio.7b00450. Epub 2018 Apr 19.

PMID:
29634242
9.

Synthetic Biology Makes Polymer Materials Count.

Beyer HM, Engesser R, Hörner M, Koschmieder J, Beyer P, Timmer J, Zurbriggen MD, Weber W.

Adv Mater. 2018 May;30(21):e1800472. doi: 10.1002/adma.201800472. Epub 2018 Mar 30.

PMID:
29603429
10.

Data-Driven Modeling of Intracellular Auxin Fluxes Indicates a Dominant Role of the ER in Controlling Nuclear Auxin Uptake.

Middleton AM, Dal Bosco C, Chlap P, Bensch R, Harz H, Ren F, Bergmann S, Wend S, Weber W, Hayashi KI, Zurbriggen MD, Uhl R, Ronneberger O, Palme K, Fleck C, Dovzhenko A.

Cell Rep. 2018 Mar 13;22(11):3044-3057. doi: 10.1016/j.celrep.2018.02.074.

11.

Multiple links between shade avoidance and auxin networks.

Iglesias MJ, Sellaro R, Zurbriggen MD, Casal JJ.

J Exp Bot. 2018 Jan 4;69(2):213-228. doi: 10.1093/jxb/erx295. Review.

PMID:
29036463
12.

Chloroplast Redox Status Modulates Genome-Wide Plant Responses during the Non-host Interaction of Tobacco with the Hemibiotrophic Bacterium Xanthomonas campestris pv. vesicatoria.

Pierella Karlusich JJ, Zurbriggen MD, Shahinnia F, Sonnewald S, Sonnewald U, Hosseini SA, Hajirezaei MR, Carrillo N.

Front Plant Sci. 2017 Jul 4;8:1158. doi: 10.3389/fpls.2017.01158. eCollection 2017.

13.

Quantitatively Understanding Plant Signaling: Novel Theoretical-Experimental Approaches.

Samodelov SL, Zurbriggen MD.

Trends Plant Sci. 2017 Aug;22(8):685-704. doi: 10.1016/j.tplants.2017.05.006. Epub 2017 Jun 28. Review.

PMID:
28668509
14.

Variation in auxin sensing guides AUX/IAA transcriptional repressor ubiquitylation and destruction.

Winkler M, Niemeyer M, Hellmuth A, Janitza P, Christ G, Samodelov SL, Wilde V, Majovsky P, Trujillo M, Zurbriggen MD, Hoehenwarter W, Quint M, Calderón Villalobos LIA.

Nat Commun. 2017 Jun 7;8:15706. doi: 10.1038/ncomms15706.

15.

Unearthing the transition rates between photoreceptor conformers.

Smith RW, Helwig B, Westphal AH, Pel E, Hörner M, Beyer HM, Samodelov SL, Weber W, Zurbriggen MD, Borst JW, Fleck C.

BMC Syst Biol. 2016 Nov 25;10(1):110.

16.

StrigoQuant: A genetically encoded biosensor for quantifying strigolactone activity and specificity.

Samodelov SL, Beyer HM, Guo X, Augustin M, Jia KP, Baz L, Ebenhöh O, Beyer P, Weber W, Al-Babili S, Zurbriggen MD.

Sci Adv. 2016 Nov 4;2(11):e1601266. eCollection 2016 Nov.

17.

Erratum to: Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression.

Ochoa-Fernandez R, Samodelov SL, Brandl SM, Wehinger E, Müller K, Weber W, Zurbriggen MD.

Methods Mol Biol. 2016;1408:E1. doi: 10.1007/978-1-4939-3512-3_28. No abstract available.

PMID:
27314667
18.

Synthetic strategies for plant signalling studies: molecular toolbox and orthogonal platforms.

Braguy J, Zurbriggen MD.

Plant J. 2016 Jul;87(1):118-38. doi: 10.1111/tpj.13218. Review.

19.

Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression.

Ochoa-Fernandez R, Samodelov SL, Brandl SM, Wehinger E, Müller K, Weber W, Zurbriggen MD.

Methods Mol Biol. 2016;1408:125-39. doi: 10.1007/978-1-4939-3512-3_9. Erratum in: Methods Mol Biol. 2016;1408:E1.

PMID:
26965120
20.

A synthetic mammalian network to compute population borders based on engineered reciprocal cell-cell communication.

Kolar K, Wischhusen HM, Müller K, Karlsson M, Weber W, Zurbriggen MD.

BMC Syst Biol. 2015 Dec 30;9:97. doi: 10.1186/s12918-015-0252-1.

21.

Signalling to the nucleus under the control of light and small molecules.

Juillot S, Beyer HM, Madl J, Weber W, Zurbriggen MD, Römer W.

Mol Biosyst. 2016 Feb;12(2):345-9. doi: 10.1039/c5mb00763a.

PMID:
26672971
22.

AQUA Cloning: A Versatile and Simple Enzyme-Free Cloning Approach.

Beyer HM, Gonschorek P, Samodelov SL, Meier M, Weber W, Zurbriggen MD.

PLoS One. 2015 Sep 11;10(9):e0137652. doi: 10.1371/journal.pone.0137652. eCollection 2015.

23.

Correction to Transcription Factor Sensor System for Parallel Quantification of Metabolites On-Chip.

Ketterer S, Hövermann D, Guebeli RJ, Bartels-Burgahn F, Riewe D, Altmann T, Zurbriggen MD, Junker B, Weber W, Meier M.

Anal Chem. 2015 Aug 4;87(15):8034. doi: 10.1021/acs.analchem.5b02553. Epub 2015 Jul 24. No abstract available.

PMID:
26205219
24.

Red Light-Regulated Reversible Nuclear Localization of Proteins in Mammalian Cells and Zebrafish.

Beyer HM, Juillot S, Herbst K, Samodelov SL, Müller K, Schamel WW, Römer W, Schäfer E, Nagy F, Strähle U, Weber W, Zurbriggen MD.

ACS Synth Biol. 2015 Sep 18;4(9):951-8. doi: 10.1021/acssynbio.5b00004. Epub 2015 Mar 30.

PMID:
25803699
25.

An optogenetic upgrade for the Tet-OFF system.

Müller K, Zurbriggen MD, Weber W.

Biotechnol Bioeng. 2015 Jul;112(7):1483-7. doi: 10.1002/bit.25562. Epub 2015 Mar 13.

PMID:
25683779
26.

Transcription factor sensor system for parallel quantification of metabolites on-chip.

Ketterer S, Hövermann D, Guebeli RJ, Bartels-Burgahn F, Riewe D, Altmann T, Zurbriggen MD, Junker B, Weber W, Meier M.

Anal Chem. 2014 Dec 16;86(24):12152-8. doi: 10.1021/ac503269m. Epub 2014 Dec 5. Erratum in: Anal Chem. 2015 Aug 4;87(15):8034.

PMID:
25479036
27.

Orthogonal optogenetic triple-gene control in Mammalian cells.

Müller K, Engesser R, Timmer J, Zurbriggen MD, Weber W.

ACS Synth Biol. 2014 Nov 21;3(11):796-801. doi: 10.1021/sb500305v. Epub 2014 Oct 28.

PMID:
25343333
28.

Optogenetics for gene expression in mammalian cells.

Müller K, Naumann S, Weber W, Zurbriggen MD.

Biol Chem. 2015 Feb;396(2):145-52. doi: 10.1515/hsz-2014-0199. Review.

PMID:
25153239
29.

Novel perspectives for the engineering of abiotic stress tolerance in plants.

Cabello JV, Lodeyro AF, Zurbriggen MD.

Curr Opin Biotechnol. 2014 Apr;26:62-70. doi: 10.1016/j.copbio.2013.09.011. Epub 2013 Oct 23. Review.

PMID:
24679260
30.

Control of gene expression using a red- and far-red light-responsive bi-stable toggle switch.

Müller K, Zurbriggen MD, Weber W.

Nat Protoc. 2014 Mar;9(3):622-32. doi: 10.1038/nprot.2014.038. Epub 2014 Feb 20.

PMID:
24556785
31.

A red light-controlled synthetic gene expression switch for plant systems.

Müller K, Siegel D, Rodriguez Jahnke F, Gerrer K, Wend S, Decker EL, Reski R, Weber W, Zurbriggen MD.

Mol Biosyst. 2014 Jul;10(7):1679-88. doi: 10.1039/c3mb70579j. Epub 2014 Jan 27.

PMID:
24469598
32.

Optogenetic control of protein kinase activity in mammalian cells.

Wend S, Wagner HJ, Müller K, Zurbriggen MD, Weber W, Radziwill G.

ACS Synth Biol. 2014 May 16;3(5):280-5. doi: 10.1021/sb400090s. Epub 2013 Oct 4.

PMID:
24090449
33.

Synthesis of phycocyanobilin in mammalian cells.

Müller K, Engesser R, Timmer J, Nagy F, Zurbriggen MD, Weber W.

Chem Commun (Camb). 2013 Oct 11;49(79):8970-2. doi: 10.1039/c3cc45065a.

PMID:
23963496
34.

A quantitative ratiometric sensor for time-resolved analysis of auxin dynamics.

Wend S, Dal Bosco C, Kämpf MM, Ren F, Palme K, Weber W, Dovzhenko A, Zurbriggen MD.

Sci Rep. 2013;3:2052. doi: 10.1038/srep02052.

35.

Multi-chromatic control of mammalian gene expression and signaling.

Müller K, Engesser R, Schulz S, Steinberg T, Tomakidi P, Weber CC, Ulm R, Timmer J, Zurbriggen MD, Weber W.

Nucleic Acids Res. 2013 Jul;41(12):e124. doi: 10.1093/nar/gkt340. Epub 2013 Apr 26.

36.

Bacterial signaling systems as platforms for rational design of new generations of biosensors.

Checa SK, Zurbriggen MD, Soncini FC.

Curr Opin Biotechnol. 2012 Oct;23(5):766-72. doi: 10.1016/j.copbio.2012.05.003. Epub 2012 Jun 2. Review.

PMID:
22658939
37.

Rewiring and dosing of systems modules as a design approach for synthetic mammalian signaling networks.

Kämpf MM, Engesser R, Busacker M, Hörner M, Karlsson M, Zurbriggen MD, Fussenegger M, Timmer J, Weber W.

Mol Biosyst. 2012 Jun;8(6):1824-32. doi: 10.1039/c2mb05509k. Epub 2012 Apr 25.

PMID:
22532387
38.

Plant and bacterial systems biology as platform for plant synthetic bio(techno)logy.

Zurbriggen MD, Moor A, Weber W.

J Biotechnol. 2012 Jul 31;160(1-2):80-90. doi: 10.1016/j.jbiotec.2012.01.014. Epub 2012 Jan 25. Review.

PMID:
22306308
39.

ROS signaling in the hypersensitive response: when, where and what for?

Zurbriggen MD, Carrillo N, Hajirezaei MR.

Plant Signal Behav. 2010 Apr;5(4):393-6. Epub 2010 Apr 26.

40.

Engineering the future. Development of transgenic plants with enhanced tolerance to adverse environments.

Zurbriggen MD, Hajirezaei MR, Carrillo N.

Biotechnol Genet Eng Rev. 2010;27:33-56. Review.

PMID:
21415892
41.

Chloroplast-generated reactive oxygen species play a major role in localized cell death during the non-host interaction between tobacco and Xanthomonas campestris pv. vesicatoria.

Zurbriggen MD, Carrillo N, Tognetti VB, Melzer M, Peisker M, Hause B, Hajirezaei MR.

Plant J. 2009 Dec;60(6):962-73. doi: 10.1111/j.1365-313X.2009.04010.x.

42.

Combating stress with flavodoxin: a promising route for crop improvement.

Zurbriggen MD, Tognetti VB, Fillat MF, Hajirezaei MR, Valle EM, Carrillo N.

Trends Biotechnol. 2008 Oct;26(10):531-7. doi: 10.1016/j.tibtech.2008.07.001. Epub 2008 Aug 14.

PMID:
18706721
43.

Enhanced plant tolerance to iron starvation by functional substitution of chloroplast ferredoxin with a bacterial flavodoxin.

Tognetti VB, Zurbriggen MD, Morandi EN, Fillat MF, Valle EM, Hajirezaei MR, Carrillo N.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11495-500. Epub 2007 Jun 25.

44.

Stress-inducible flavodoxin from photosynthetic microorganisms. The mystery of flavodoxin loss from the plant genome.

Zurbriggen MD, Tognetti VB, Carrillo N.

IUBMB Life. 2007 Apr-May;59(4-5):355-60. Review.

45.

Nocardia asteroides mastitis in a small Argentinian herd.

Tarabla HD, Zurbriggen MD, Canavesio VR, Vitulich CA, Calvinho LF.

Vet Rec. 1993 Mar 20;132(12):303. No abstract available.

PMID:
8470348

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