Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 44

1.

Akkermansia muciniphila abundance is lower in severe obesity, but its increased level after bariatric surgery is not associated with metabolic health improvement.

Dao MC, Belda E, Prifti E, Everard A, Kayser BD, Bouillot JL, Chevallier JM, Pons N, Le Chatelier E, Ehrlich SD, Doré J, Aron-Wisnewsky J, Zucker JD, Cani PD, Clément K.

Am J Physiol Endocrinol Metab. 2019 Sep 1;317(3):E446-E459. doi: 10.1152/ajpendo.00140.2019. Epub 2019 Jul 2.

PMID:
31265324
2.

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK.

mSystems. 2019 Jun 11;4(4). pii: e00061-19. doi: 10.1128/mSystems.00061-19.

3.

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity.

Dao MC, Sokolovska N, Brazeilles R, Affeldt S, Pelloux V, Prifti E, Chilloux J, Verger EO, Kayser BD, Aron-Wisnewsky J, Ichou F, Pujos-Guillot E, Hoyles L, Juste C, Doré J, Dumas ME, Rizkalla SW, Holmes BA, Zucker JD, Clément K; MICRO-Obes Consortium.

Front Physiol. 2019 Feb 5;9:1958. doi: 10.3389/fphys.2018.01958. eCollection 2018.

4.

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Hurley JM, Jankowski MS, De Los Santos H, Crowell AM, Fordyce SB, Zucker JD, Kumar N, Purvine SO, Robinson EW, Shukla A, Zink E, Cannon WR, Baker SE, Loros JJ, Dunlap JC.

Cell Syst. 2018 Dec 26;7(6):613-626.e5. doi: 10.1016/j.cels.2018.10.014. Epub 2018 Dec 12.

PMID:
30553726
5.

Prediction of Long-Term Diabetes Remission After RYGB, Sleeve Gastrectomy, and Adjustable Gastric Banding Using DiaRem and Advanced-DiaRem Scores.

Dicker D, Golan R, Aron-Wisnewsky J, Zucker JD, Sokolowska N, Comaneshter DS, Yahalom R, Vinker S, Clément K, Rudich A.

Obes Surg. 2019 Mar;29(3):796-804. doi: 10.1007/s11695-018-3583-3.

PMID:
30467708
6.

Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann Machines.

Sokolovska N, Permiakova O, Forslund K, Zucker JD.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov 5. doi: 10.1109/TCBB.2018.2879504. [Epub ahead of print]

PMID:
30403636
7.

Long-term Relapse of Type 2 Diabetes After Roux-en-Y Gastric Bypass: Prediction and Clinical Relevance.

Debédat J, Sokolovska N, Coupaye M, Panunzi S, Chakaroun R, Genser L, de Turenne G, Bouillot JL, Poitou C, Oppert JM, Blüher M, Stumvoll M, Mingrone G, Ledoux S, Zucker JD, Clément K, Aron-Wisnewsky J.

Diabetes Care. 2018 Oct;41(10):2086-2095. doi: 10.2337/dc18-0567. Epub 2018 Aug 6.

PMID:
30082327
8.

Major microbiota dysbiosis in severe obesity: fate after bariatric surgery.

Aron-Wisnewsky J, Prifti E, Belda E, Ichou F, Kayser BD, Dao MC, Verger EO, Hedjazi L, Bouillot JL, Chevallier JM, Pons N, Le Chatelier E, Levenez F, Ehrlich SD, Dore J, Zucker JD, Clément K.

Gut. 2019 Jan;68(1):70-82. doi: 10.1136/gutjnl-2018-316103. Epub 2018 Jun 13.

PMID:
29899081
9.

No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

Danchin A, Ouzounis C, Tokuyasu T, Zucker JD.

Microb Biotechnol. 2018 Jul;11(4):588-605. doi: 10.1111/1751-7915.13284. Epub 2018 May 28. Review.

10.

The advanced-DiaRem score improves prediction of diabetes remission 1 year post-Roux-en-Y gastric bypass.

Aron-Wisnewsky J, Sokolovska N, Liu Y, Comaneshter DS, Vinker S, Pecht T, Poitou C, Oppert JM, Bouillot JL, Genser L, Dicker D, Zucker JD, Rudich A, Clément K.

Diabetologia. 2017 Oct;60(10):1892-1902. doi: 10.1007/s00125-017-4371-7. Epub 2017 Jul 21.

PMID:
28733906
11.

The FAT Score, a Fibrosis Score of Adipose Tissue: Predicting Weight-Loss Outcome After Gastric Bypass.

Bel Lassen P, Charlotte F, Liu Y, Bedossa P, Le Naour G, Tordjman J, Poitou C, Bouillot JL, Genser L, Zucker JD, Sokolovska N, Aron-Wisnewsky J, Clément K.

J Clin Endocrinol Metab. 2017 Jul 1;102(7):2443-2453. doi: 10.1210/jc.2017-00138.

PMID:
28419237
12.

Spectral consensus strategy for accurate reconstruction of large biological networks.

Affeldt S, Sokolovska N, Prifti E, Zucker JD.

BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):493. doi: 10.1186/s12859-016-1308-y.

13.

Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.

White RA 3rd, Bottos EM, Roy Chowdhury T, Zucker JD, Brislawn CJ, Nicora CD, Fansler SJ, Glaesemann KR, Glass K, Jansson JK.

mSystems. 2016 Jun 28;1(3). pii: e00045-16. eCollection 2016 May-Jun.

14.

Sparse Zero-Sum Games as Stable Functional Feature Selection.

Sokolovska N, Teytaud O, Rizkalla S; MicroObese consortium, Clément K, Zucker JD.

PLoS One. 2015 Sep 1;10(9):e0134683. doi: 10.1371/journal.pone.0134683. eCollection 2015.

15.

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.

PLoS Comput Biol. 2015 May 28;11(5):e1004096. doi: 10.1371/journal.pcbi.1004096. eCollection 2015 May.

16.

Dietary patterns differently associate with inflammation and gut microbiota in overweight and obese subjects.

Kong LC, Holmes BA, Cotillard A, Habi-Rachedi F, Brazeilles R, Gougis S, Gausserès N, Cani PD, Fellahi S, Bastard JP, Kennedy SP, Doré J, Ehrlich SD, Zucker JD, Rizkalla SW, Clément K.

PLoS One. 2014 Oct 20;9(10):e109434. doi: 10.1371/journal.pone.0109434. eCollection 2014.

17.

The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries?

Roche B, Broutin H, Choisy M, Godreuil S, de Magny GC, Chevaleyre Y, Zucker JD, Breban R, Cazelles B, Simard F.

BMC Public Health. 2014 Jul 25;14:753. doi: 10.1186/1471-2458-14-753. Review.

18.

Association of adipose tissue and liver fibrosis with tissue stiffness in morbid obesity: links with diabetes and BMI loss after gastric bypass.

Abdennour M, Reggio S, Le Naour G, Liu Y, Poitou C, Aron-Wisnewsky J, Charlotte F, Bouillot JL, Torcivia A, Sasso M, Miette V, Zucker JD, Bedossa P, Tordjman J, Clement K.

J Clin Endocrinol Metab. 2014 Mar;99(3):898-907. doi: 10.1210/jc.2013-3253. Epub 2014 Jan 1.

PMID:
24423338
19.

Insulin resistance and inflammation predict kinetic body weight changes in response to dietary weight loss and maintenance in overweight and obese subjects by using a Bayesian network approach.

Kong LC, Wuillemin PH, Bastard JP, Sokolovska N, Gougis S, Fellahi S, Darakhshan F, Bonnefont-Rousselot D, Bittar R, Doré J, Zucker JD, Clément K, Rizkalla S.

Am J Clin Nutr. 2013 Dec;98(6):1385-94. doi: 10.3945/ajcn.113.058099. Epub 2013 Oct 30.

PMID:
24172304
20.

Dietary intervention impact on gut microbial gene richness.

Cotillard A, Kennedy SP, Kong LC, Prifti E, Pons N, Le Chatelier E, Almeida M, Quinquis B, Levenez F, Galleron N, Gougis S, Rizkalla S, Batto JM, Renault P; ANR MicroObes consortium, Doré J, Zucker JD, Clément K, Ehrlich SD.

Nature. 2013 Aug 29;500(7464):585-8. doi: 10.1038/nature12480. Erratum in: Nature. 2013 Oct 24;502(7472)580.

PMID:
23985875
21.

Richness of human gut microbiome correlates with metabolic markers.

Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium, Bork P, Wang J, Ehrlich SD, Pedersen O.

Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506.

PMID:
23985870
22.

Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM.

Dreyfuss JM, Zucker JD, Hood HM, Ocasio LR, Sachs MS, Galagan JE.

PLoS Comput Biol. 2013;9(7):e1003126. doi: 10.1371/journal.pcbi.1003126. Epub 2013 Jul 18.

23.

Noninvasive diagnosis of nonalcoholic steatohepatitis disease based on clinical decision support system.

Douali N, Abdennour M, Sasso M, Miette V, Tordjman J, Bedossa P, Veyrie N, Poitou C, Aron-Wisnewsky J, Clément K, Jaulent MC, Zucker JD.

Stud Health Technol Inform. 2013;192:1178.

PMID:
23920952
24.

Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes.

Kong LC, Tap J, Aron-Wisnewsky J, Pelloux V, Basdevant A, Bouillot JL, Zucker JD, Doré J, Clément K.

Am J Clin Nutr. 2013 Jul;98(1):16-24. doi: 10.3945/ajcn.113.058743. Epub 2013 May 29.

PMID:
23719559
25.

A distinct adipose tissue gene expression response to caloric restriction predicts 6-mo weight maintenance in obese subjects.

Mutch DM, Pers TH, Temanni MR, Pelloux V, Marquez-Quiñones A, Holst C, Martinez JA, Babalis D, van Baak MA, Handjieva-Darlenska T, Walker CG, Astrup A, Saris WH, Langin D, Viguerie N, Zucker JD, Clément K; DiOGenes Project.

Am J Clin Nutr. 2011 Dec;94(6):1399-409. doi: 10.3945/ajcn.110.006858. Epub 2011 Oct 26.

PMID:
22030226
26.

Exploring interaction measures to identify informative pairs of genes.

Hanczar B, Henegar C, Zucker JD.

Int J Bioinform Res Appl. 2010;6(6):628-42.

PMID:
21354968
27.

Interactional and functional centrality in transcriptional co-expression networks.

Prifti E, Zucker JD, Clément K, Henegar C.

Bioinformatics. 2010 Dec 15;26(24):3083-9. doi: 10.1093/bioinformatics/btq591. Epub 2010 Oct 19.

PMID:
20959383
28.

Fibrosis in human adipose tissue: composition, distribution, and link with lipid metabolism and fat mass loss.

Divoux A, Tordjman J, Lacasa D, Veyrie N, Hugol D, Aissat A, Basdevant A, Guerre-Millo M, Poitou C, Zucker JD, Bedossa P, Clément K.

Diabetes. 2010 Nov;59(11):2817-25. doi: 10.2337/db10-0585. Epub 2010 Aug 16.

29.

TB database 2010: overview and update.

Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK.

Tuberculosis (Edinb). 2010 Jul;90(4):225-35. doi: 10.1016/j.tube.2010.03.010. Epub 2010 May 20. Review.

PMID:
20488753
30.

Needle and surgical biopsy techniques differentially affect adipose tissue gene expression profiles.

Mutch DM, Tordjman J, Pelloux V, Hanczar B, Henegar C, Poitou C, Veyrie N, Zucker JD, Clément K.

Am J Clin Nutr. 2009 Jan;89(1):51-7. doi: 10.3945/ajcn.2008.26802. Epub 2008 Dec 3.

PMID:
19056587
31.

FunNet: an integrative tool for exploring transcriptional interactions.

Prifti E, Zucker JD, Clement K, Henegar C.

Bioinformatics. 2008 Nov 15;24(22):2636-8. doi: 10.1093/bioinformatics/btn492. Epub 2008 Sep 17.

PMID:
18799481
32.

Use of the C4.5 machine learning algorithm to test a clinical guideline-based decision support system.

Lamy JB, Ellini A, Ebrahiminia V, Zucker JD, Falcoff H, Venot A.

Stud Health Technol Inform. 2008;136:223-8.

33.

A paradigm of diagnostic criteria for polyarteritis nodosa: analysis of a series of 949 patients with vasculitides.

Henegar C, Pagnoux C, Puéchal X, Zucker JD, Bar-Hen A, Le Guern V, Saba M, Bagnères D, Meyer O, Guillevin L; French Vasculitis Study Group.

Arthritis Rheum. 2008 May;58(5):1528-38. doi: 10.1002/art.23470.

34.

Adipose tissue transcriptomic signature highlights the pathological relevance of extracellular matrix in human obesity.

Henegar C, Tordjman J, Achard V, Lacasa D, Cremer I, Guerre-Millo M, Poitou C, Basdevant A, Stich V, Viguerie N, Langin D, Bedossa P, Zucker JD, Clement K.

Genome Biol. 2008 Jan 21;9(1):R14. doi: 10.1186/gb-2008-9-1-r14.

35.

Adipose gene expression prior to weight loss can differentiate and weakly predict dietary responders.

Mutch DM, Temanni MR, Henegar C, Combes F, Pelloux V, Holst C, Sørensen TI, Astrup A, Martinez JA, Saris WH, Viguerie N, Langin D, Zucker JD, Clément K.

PLoS One. 2007 Dec 19;2(12):e1344.

36.

Feature construction from synergic pairs to improve microarray-based classification.

Hanczar B, Zucker JD, Henegar C, Saitta L.

Bioinformatics. 2007 Nov 1;23(21):2866-72. Epub 2007 Oct 9.

PMID:
17925306
37.

Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

Henegar C, Cancello R, Rome S, Vidal H, Clément K, Zucker JD.

J Bioinform Comput Biol. 2006 Aug;4(4):833-52.

PMID:
17007070
38.

The case for strategic international alliances to harness nutritional genomics for public and personal health.

Kaput J, Ordovas JM, Ferguson L, van Ommen B, Rodriguez RL, Allen L, Ames BN, Dawson K, German B, Krauss R, Malyj W, Archer MC, Barnes S, Bartholomew A, Birk R, van Bladeren P, Bradford KJ, Brown KH, Caetano R, Castle D, Chadwick R, Clarke S, Clément K, Cooney CA, Corella D, Manica da Cruz IB, Daniel H, Duster T, Ebbesson SO, Elliott R, Fairweather-Tait S, Felton J, Fenech M, Finley JW, Fogg-Johnson N, Gill-Garrison R, Gibney MJ, Gillies PJ, Gustafsson JA, Hartman JL 4th, He L, Hwang JK, Jais JP, Jang Y, Joost H, Junien C, Kanter M, Kibbe WA, Koletzko B, Korf BR, Kornman K, Krempin DW, Langin D, Lauren DR, Ho Lee J, Leveille GA, Lin SJ, Mathers J, Mayne M, McNabb W, Milner JA, Morgan P, Muller M, Nikolsky Y, van der Ouderaa F, Park T, Pensel N, Perez-Jimenez F, Poutanen K, Roberts M, Saris WH, Schuster G, Shelling AN, Simopoulos AP, Southon S, Tai ES, Towne B, Trayhurn P, Uauy R, Visek WJ, Warden C, Weiss R, Wiencke J, Winkler J, Wolff GL, Zhao-Wilson X, Zucker JD.

Br J Nutr. 2005 Nov;94(5):623-32. Review.

39.

Reduction of macrophage infiltration and chemoattractant gene expression changes in white adipose tissue of morbidly obese subjects after surgery-induced weight loss.

Cancello R, Henegar C, Viguerie N, Taleb S, Poitou C, Rouault C, Coupaye M, Pelloux V, Hugol D, Bouillot JL, Bouloumié A, Barbatelli G, Cinti S, Svensson PA, Barsh GS, Zucker JD, Basdevant A, Langin D, Clément K.

Diabetes. 2005 Aug;54(8):2277-86.

40.

Cathepsin S, a novel biomarker of adiposity: relevance to atherogenesis.

Taleb S, Lacasa D, Bastard JP, Poitou C, Cancello R, Pelloux V, Viguerie N, Benis A, Zucker JD, Bouillot JL, Coussieu C, Basdevant A, Langin D, Clement K.

FASEB J. 2005 Sep;19(11):1540-2. Epub 2005 Jun 28.

PMID:
15985526
41.

Serum amyloid A: production by human white adipocyte and regulation by obesity and nutrition.

Poitou C, Viguerie N, Cancello R, De Matteis R, Cinti S, Stich V, Coussieu C, Gauthier E, Courtine M, Zucker JD, Barsh GS, Saris W, Bruneval P, Basdevant A, Langin D, Clément K.

Diabetologia. 2005 Mar;48(3):519-28. Epub 2005 Feb 24.

PMID:
15729583
42.

Weight loss regulates inflammation-related genes in white adipose tissue of obese subjects.

Clément K, Viguerie N, Poitou C, Carette C, Pelloux V, Curat CA, Sicard A, Rome S, Benis A, Zucker JD, Vidal H, Laville M, Barsh GS, Basdevant A, Stich V, Cancello R, Langin D.

FASEB J. 2004 Nov;18(14):1657-69.

PMID:
15522911
43.

In vivo epinephrine-mediated regulation of gene expression in human skeletal muscle.

Viguerie N, Clement K, Barbe P, Courtine M, Benis A, Larrouy D, Hanczar B, Pelloux V, Poitou C, Khalfallah Y, Barsh GS, Thalamas C, Zucker JD, Langin D.

J Clin Endocrinol Metab. 2004 May;89(5):2000-14.

PMID:
15126512
44.

A grounded theory of abstraction in artificial intelligence.

Zucker JD.

Philos Trans R Soc Lond B Biol Sci. 2003 Jul 29;358(1435):1293-309.

Supplemental Content

Loading ...
Support Center