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Items: 1 to 50 of 371

1.

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK.

mSystems. 2019 Jun 11;4(4). pii: e00061-19. doi: 10.1128/mSystems.00061-19.

2.

Preliminary Screening Results Outside the 1945-1965 Birth Cohort: A Forgotten Population for Hepatitis C?

Winetsky D, Zucker J, Slowikowski J, Scherer M, Verna EC, Gordon P.

Open Forum Infect Dis. 2019 Apr 10;6(5):ofz178. doi: 10.1093/ofid/ofz178. eCollection 2019 May.

3.

Predictors of Disengagement in Care for Individuals Receiving Pre-Exposure Prophylaxis (PrEP).

Zucker J, Carnevale C, Richards P, Slowikowski J, Borsa A, Gottlieb F, Vakkur I, Hyden C, Olender S, Cohall A, Gordon P, Sobieszczyk ME.

J Acquir Immune Defic Syndr. 2019 Apr 11. doi: 10.1097/QAI.0000000000002054. [Epub ahead of print]

PMID:
30985557
4.

Clinical Utilization of the FilmArray Meningitis/Encephalitis (ME) Multiplex Polymerase Chain Reaction (PCR) Assay.

Radmard S, Reid S, Ciryam P, Boubour A, Ho N, Zucker J, Sayre D, Greendyke WG, Miko BA, Pereira MR, Whittier S, Green DA, Thakur KT.

Front Neurol. 2019 Mar 26;10:281. doi: 10.3389/fneur.2019.00281. eCollection 2019.

5.

Towards the Inference of Social and Behavioral Determinants of Sexual Health: Development of a Gold-Standard Corpus with Semi-Supervised Learning.

Feller DJ, Zucker J, Don't Walk OB 4th, Srikishan B, Martinez R, Evans H, Yin MT, Gordon P, Elhadad N.

AMIA Annu Symp Proc. 2018 Dec 5;2018:422-429. eCollection 2018.

6.

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity.

Dao MC, Sokolovska N, Brazeilles R, Affeldt S, Pelloux V, Prifti E, Chilloux J, Verger EO, Kayser BD, Aron-Wisnewsky J, Ichou F, Pujos-Guillot E, Hoyles L, Juste C, Doré J, Dumas ME, Rizkalla SW, Holmes BA, Zucker JD, Clément K; MICRO-Obes Consortium.

Front Physiol. 2019 Feb 5;9:1958. doi: 10.3389/fphys.2018.01958. eCollection 2018.

7.

Indications and results of diagnostic biopsy in pediatric renal tumors: A retrospective analysis of 317 patients with critical review of SIOP guidelines.

de la Monneraye Y, Michon J, Pacquement H, Aerts I, Orbach D, Doz F, Bourdeaut F, Sarnacki S, Philippe-Chomette P, Audry G, Coulomb A, Fréneaux P, Klijanienko J, Berrebi D, Zucker JM, Schleiermacher G, Brisse HJ.

Pediatr Blood Cancer. 2019 Jun;66(6):e27641. doi: 10.1002/pbc.27641. Epub 2019 Feb 12.

PMID:
30746839
8.

Improving HPV vaccine delivery at school-based health centers.

Oliver K, McCorkell C, Pister I, Majid N, Benkel DH, Zucker JR.

Hum Vaccin Immunother. 2019 Feb 8:1-8. doi: 10.1080/21645515.2019.1578596. [Epub ahead of print]

PMID:
30735468
9.

Adolescent Preexposure Prophylaxis Administration: An Education Curriculum for Health Care Providers.

Carnevale C, Zucker J, Womack JA, Dixon J, Cohall A, Sobieszczyk ME, Gordon P.

J Pediatr Health Care. 2019 May - Jun;33(3):288-295. doi: 10.1016/j.pedhc.2018.09.007. Epub 2018 Dec 27.

PMID:
30594441
10.

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Hurley JM, Jankowski MS, De Los Santos H, Crowell AM, Fordyce SB, Zucker JD, Kumar N, Purvine SO, Robinson EW, Shukla A, Zink E, Cannon WR, Baker SE, Loros JJ, Dunlap JC.

Cell Syst. 2018 Dec 26;7(6):613-626.e5. doi: 10.1016/j.cels.2018.10.014. Epub 2018 Dec 12.

PMID:
30553726
11.

Prediction of Long-Term Diabetes Remission After RYGB, Sleeve Gastrectomy, and Adjustable Gastric Banding Using DiaRem and Advanced-DiaRem Scores.

Dicker D, Golan R, Aron-Wisnewsky J, Zucker JD, Sokolowska N, Comaneshter DS, Yahalom R, Vinker S, Clément K, Rudich A.

Obes Surg. 2019 Mar;29(3):796-804. doi: 10.1007/s11695-018-3583-3.

PMID:
30467708
12.

Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann Machines.

Sokolovska N, Permiakova O, Forslund K, Zucker JD.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov 5. doi: 10.1109/TCBB.2018.2879504. [Epub ahead of print]

PMID:
30403636
13.

Missed Opportunities for Engagement in the Prevention Continuum in a Predominantly Black and Latino Community in New York City.

Zucker J, Patterson B, Ellman T, Slowikowski J, Olender S, Gordon P, Morrison EAB, Sobieszczyk ME.

AIDS Patient Care STDS. 2018 Nov;32(11):432-437. doi: 10.1089/apc.2018.0127.

PMID:
30398951
14.

Long-term Relapse of Type 2 Diabetes After Roux-en-Y Gastric Bypass: Prediction and Clinical Relevance.

Debédat J, Sokolovska N, Coupaye M, Panunzi S, Chakaroun R, Genser L, de Turenne G, Bouillot JL, Poitou C, Oppert JM, Blüher M, Stumvoll M, Mingrone G, Ledoux S, Zucker JD, Clément K, Aron-Wisnewsky J.

Diabetes Care. 2018 Oct;41(10):2086-2095. doi: 10.2337/dc18-0567. Epub 2018 Aug 6.

PMID:
30082327
15.

Public Health Consequences of a 2013 Measles Outbreak in New York City.

Rosen JB, Arciuolo RJ, Khawja AM, Fu J, Giancotti FR, Zucker JR.

JAMA Pediatr. 2018 Sep 1;172(9):811-817. doi: 10.1001/jamapediatrics.2018.1024.

PMID:
30073293
16.

Development and Validation of an Electronic Medical Record-Based Algorithm to Identify Patient Milestones in the Hepatitis C Virus Care Cascade.

Zucker J, Aaron JG, Feller DJ, Slowikowski J, Evans H, Scherer ML, Yin MT, Gordon P.

Open Forum Infect Dis. 2018 Jul 3;5(7):ofy153. doi: 10.1093/ofid/ofy153. eCollection 2018 Jul.

17.

Major microbiota dysbiosis in severe obesity: fate after bariatric surgery.

Aron-Wisnewsky J, Prifti E, Belda E, Ichou F, Kayser BD, Dao MC, Verger EO, Hedjazi L, Bouillot JL, Chevallier JM, Pons N, Le Chatelier E, Levenez F, Ehrlich SD, Dore J, Zucker JD, Clément K.

Gut. 2019 Jan;68(1):70-82. doi: 10.1136/gutjnl-2018-316103. Epub 2018 Jun 13.

PMID:
29899081
18.

No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

Danchin A, Ouzounis C, Tokuyasu T, Zucker JD.

Microb Biotechnol. 2018 Jul;11(4):588-605. doi: 10.1111/1751-7915.13284. Epub 2018 May 28. Review.

19.

Monitoring Serious Adverse Events in the Sierra Leone Trial to Introduce a Vaccine Against Ebola.

Jarrett OD, Seward JF, Fombah AE, Lindblad R, Jalloh MI, El-Khorazaty J, Dawson P, Burton D, Zucker J, Carr W, Bah MM, Deen GF, George PM, James F, Lisk DR, Pratt D, Russell JBW, Sandy JD, Turay P, Hamel MJ, Schrag SJ, Walker RE, Samai M, Goldstein ST.

J Infect Dis. 2018 May 18;217(suppl_1):S24-S32. doi: 10.1093/infdis/jiy042.

20.

Positive or Not, That Is the Question: HIV Testing for Individuals on Pre-exposure Prophylaxis.

Zucker J, Carnevale C, Rai AJ, Gordon P, Sobieszczyk ME.

J Acquir Immune Defic Syndr. 2018 Jun 1;78(2):e11-e13. doi: 10.1097/QAI.0000000000001665. No abstract available.

21.

Using Clinical Notes and Natural Language Processing for Automated HIV Risk Assessment.

Feller DJ, Zucker J, Yin MT, Gordon P, Elhadad N.

J Acquir Immune Defic Syndr. 2018 Feb 1;77(2):160-166. doi: 10.1097/QAI.0000000000001580.

22.

Effectiveness of Measles Vaccination and Immune Globulin Post-Exposure Prophylaxis in an Outbreak Setting-New York City, 2013.

Arciuolo RJ, Jablonski RR, Zucker JR, Rosen JB.

Clin Infect Dis. 2017 Nov 13;65(11):1843-1847. doi: 10.1093/cid/cix639.

PMID:
29028959
23.

Identifying Gaps in Respiratory Syncytial Virus Disease Epidemiology in the United States Prior to the Introduction of Vaccines.

Kim L, Rha B, Abramson JS, Anderson LJ, Byington CL, Chen GL, DeVincenzo J, Edwards KM, Englund JA, Falsey AR, Griffin MR, Karron RA, Martin KG, Meissner HC, Munoz FM, Pavia AT, Piedra PA, Schaffner W, Simões EAF, Singleton R, Talbot HK, Walsh EE, Zucker JR, Gerber SI.

Clin Infect Dis. 2017 Sep 15;65(6):1020-1025. doi: 10.1093/cid/cix432.

24.

Missed Testing Opportunities for HIV Screening and Early Diagnosis in an Urban Tertiary Care Center.

DeRose J, Zucker J, Cennimo D, Swaminathan S.

AIDS Res Treat. 2017;2017:5708620. doi: 10.1155/2017/5708620. Epub 2017 Jul 4.

25.

The advanced-DiaRem score improves prediction of diabetes remission 1 year post-Roux-en-Y gastric bypass.

Aron-Wisnewsky J, Sokolovska N, Liu Y, Comaneshter DS, Vinker S, Pecht T, Poitou C, Oppert JM, Bouillot JL, Genser L, Dicker D, Zucker JD, Rudich A, Clément K.

Diabetologia. 2017 Oct;60(10):1892-1902. doi: 10.1007/s00125-017-4371-7. Epub 2017 Jul 21.

PMID:
28733906
26.

Rubella Surveillance and Diagnostic Testing among a Low-Prevalence Population, New York City, 2012-2013.

Isaac BM, Zucker JR, Giancotti FR, Abernathy E, Icenogle J, Rakeman JL, Rosen JB.

Clin Vaccine Immunol. 2017 Sep 5;24(9). pii: e00102-17. doi: 10.1128/CVI.00102-17. Print 2017 Sep.

27.

Zika Virus-Associated Cognitive Impairment in Adolescent, 2016.

Zucker J, Neu N, Chiriboga CA, Hinton VJ, Leonardo M, Sheikh A, Thakur K.

Emerg Infect Dis. 2017 Jun;23(6):1047-1048. doi: 10.3201/eid2306.162029.

28.

The FAT Score, a Fibrosis Score of Adipose Tissue: Predicting Weight-Loss Outcome After Gastric Bypass.

Bel Lassen P, Charlotte F, Liu Y, Bedossa P, Le Naour G, Tordjman J, Poitou C, Bouillot JL, Genser L, Zucker JD, Sokolovska N, Aron-Wisnewsky J, Clément K.

J Clin Endocrinol Metab. 2017 Jul 1;102(7):2443-2453. doi: 10.1210/jc.2017-00138.

PMID:
28419237
29.

Hepatitis A Cases Among Food Handlers: A Local Health Department Response-New York City, 2013.

Ridpath A, Reddy V, Layton M, Misener M, Scaccia A, Starr D, Stavinsky F, Varma JK, Waechter H, Zucker JR, Balter S.

J Public Health Manag Pract. 2017 Nov/Dec;23(6):571-576. doi: 10.1097/PHH.0000000000000526.

PMID:
28166179
30.

Spectral consensus strategy for accurate reconstruction of large biological networks.

Affeldt S, Sokolovska N, Prifti E, Zucker JD.

BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):493. doi: 10.1186/s12859-016-1308-y.

31.

Notes from the Field: Use of Social Media as a Communication Tool During a Mumps Outbreak - New York City, 2015.

Isaac BM, Zucker JR, MacGregor J, Asfaw M, Rakeman JL, Fu J, Deocharan B, Liu D, Rosen JB.

MMWR Morb Mortal Wkly Rep. 2017 Jan 20;66(2):60-61. doi: 10.15585/mmwr.mm6602a5. No abstract available.

32.

Use of Precision Medicine Molecular Profiling of Baseline Tumor Specimen May Not Benefit Outcomes in Children With Relapsed or Refractory Pediatric Sarcomas.

Carter J, Cheng L, Zucker J, Marshall M, Pollok K, Murray M, Li L, Renbarger J.

Clin Pharmacol Ther. 2017 Mar;101(3):328-330. doi: 10.1002/cpt.599. No abstract available.

33.

Mumps Outbreak Among a Highly Vaccinated University Community-New York City, January-April 2014.

Patel LN, Arciuolo RJ, Fu J, Giancotti FR, Zucker JR, Rakeman JL, Rosen JB.

Clin Infect Dis. 2017 Feb 15;64(4):408-412. doi: 10.1093/cid/ciw762.

PMID:
27927872
34.

Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.

White RA 3rd, Bottos EM, Roy Chowdhury T, Zucker JD, Brislawn CJ, Nicora CD, Fansler SJ, Glaesemann KR, Glass K, Jansson JK.

mSystems. 2016 Jun 28;1(3). pii: e00045-16. eCollection 2016 May-Jun.

35.

Adolescent HIV viral load in an urban hospital in Newark, New Jersey.

Wong K, Zucker J, Fernandes H, Cennimo D.

Int J Pediatr Adolesc Med. 2016 Sep;3(3):103-108. doi: 10.1016/j.ijpam.2016.04.001. Epub 2016 May 13.

36.

Effects of Health Level 7 Messaging on Data Quality in New York City's Immunization Information System, 2014.

Metroka AE, Papadouka V, Ternier A, Zucker JR.

Public Health Rep. 2016 Jul-Aug;131(4):583-7.

37.

Identifying Areas for Improvement in the HIV Screening Process of a High-Prevalence Emergency Department.

Zucker J, Cennimo D, Sugalski G, Swaminathan S.

AIDS Patient Care STDS. 2016 Jun;30(6):247-53. doi: 10.1089/apc.2016.0068. Erratum in: AIDS Patient Care STDS. 2016 Jul;30(7):357.

PMID:
27286295
38.

Elevated Pertussis Reporting in Response to 2011-2012 Outbreak, New York City, New York, USA.

Arciuolo RJ, Rosen JB, Zucker JR.

Emerg Infect Dis. 2016 Jun;22(6):1117-9. doi: 10.3201/eid2206.151514. No abstract available.

39.

Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction.

Henry CS, Bernstein HC, Weisenhorn P, Taylor RC, Lee JY, Zucker J, Song HS.

J Cell Physiol. 2016 Nov;231(11):2339-45. doi: 10.1002/jcp.25428. Epub 2016 Jun 2.

40.

Impact of Stewardship Interventions on Antiretroviral Medication Errors in an Urban Medical Center: A 3-Year, Multiphase Study.

Zucker J, Mittal J, Jen SP, Cheng L, Cennimo D.

Pharmacotherapy. 2016 Mar;36(3):245-51. doi: 10.1002/phar.1716. Epub 2016 Mar 6.

PMID:
26833760
41.

Medication errors with antituberculosis therapy in an inpatient, academic setting: forgotten but not gone.

Jen SP, Zucker J, Buczynski P, Odenigbo C, Cennimo D, Patrawalla A.

J Clin Pharm Ther. 2016 Feb;41(1):54-8. doi: 10.1111/jcpt.12347. Epub 2016 Jan 13.

PMID:
26763664
42.

A Child With Dyserythropoietic Anemia and Megakaryocyte Dysplasia Due to a Novel 5'UTR GATA1s Splice Mutation.

Zucker J, Temm C, Czader M, Nalepa G.

Pediatr Blood Cancer. 2016 May;63(5):917-21. doi: 10.1002/pbc.25871. Epub 2015 Dec 29.

43.

High utilization of inpatient detoxification: predictors among US veterans.

Chang G, Raffi E, Tang M, Fernando GI, Zucker J, Schein AZ.

Am J Drug Alcohol Abuse. 2016 May;42(3):279-86. doi: 10.3109/00952990.2015.1089256. Epub 2015 Oct 30.

PMID:
26516789
44.

Cost-Effectiveness of Meningococcal Vaccination Among Men Who Have Sex With Men in New York City.

Simon MS, Weiss D, Geevarughese A, Kratz MM, Cutler B, Gulick RM, Zucker JR, Varma JK, Schackman BR.

J Acquir Immune Defic Syndr. 2016 Feb 1;71(2):146-54. doi: 10.1097/QAI.0000000000000822.

PMID:
26334735
45.

Sparse Zero-Sum Games as Stable Functional Feature Selection.

Sokolovska N, Teytaud O, Rizkalla S; MicroObese consortium, Clément K, Zucker JD.

PLoS One. 2015 Sep 1;10(9):e0134683. doi: 10.1371/journal.pone.0134683. eCollection 2015.

46.

Community-Based Outbreak of Neisseria meningitidis Serogroup C Infection in Men who Have Sex with Men, New York City, New York, USA, 2010-2013.

Kratz MM, Weiss D, Ridpath A, Zucker JR, Geevarughese A, Rakeman J, Varma JK.

Emerg Infect Dis. 2015 Aug;21(8):1379-86. doi: 10.3201/eid2108.141837.

47.

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.

PLoS Comput Biol. 2015 May 28;11(5):e1004096. doi: 10.1371/journal.pcbi.1004096. eCollection 2015 May.

48.

Invasive Pneumococcal Disease Following the Introduction of 13-Valent Conjugate Vaccine in Children in New York City From 2007 to 2012.

Farnham AC, Zimmerman CM, Papadouka V, Konty KJ, Zucker JR, Nattanmai GV, Jose S, Rosen JB.

JAMA Pediatr. 2015 Jul;169(7):646-52. doi: 10.1001/jamapediatrics.2015.0612.

PMID:
25938798
49.

Adolescent vaccine co-administration and coverage in New York City: 2007-2013.

Sull M, Eavey J, Papadouka V, Mandell R, Hansen MA, Zucker JR.

Pediatrics. 2014 Dec;134(6):e1576-83. doi: 10.1542/peds.2014-1452. Epub 2014 Nov 10.

50.

Dietary patterns differently associate with inflammation and gut microbiota in overweight and obese subjects.

Kong LC, Holmes BA, Cotillard A, Habi-Rachedi F, Brazeilles R, Gougis S, Gausserès N, Cani PD, Fellahi S, Bastard JP, Kennedy SP, Doré J, Ehrlich SD, Zucker JD, Rizkalla SW, Clément K.

PLoS One. 2014 Oct 20;9(10):e109434. doi: 10.1371/journal.pone.0109434. eCollection 2014.

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