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Items: 29

1.

Growth Factor-like Gene Regulation Is Separable from Survival and Maturation in Antibody-Secreting Cells.

Stephenson S, Care MA, Fan I, Zougman A, Westhead DR, Doody GM, Tooze RM.

J Immunol. 2019 Feb 15;202(4):1287-1300. doi: 10.4049/jimmunol.1801407. Epub 2019 Jan 14.

2.

Cellular Barcoding Identifies Clonal Substitution as a Hallmark of Local Recurrence in a Surgical Model of Head and Neck Squamous Cell Carcinoma.

Roh V, Abramowski P, Hiou-Feige A, Cornils K, Rivals JP, Zougman A, Aranyossy T, Thielecke L, Truan Z, Mermod M, Monnier Y, Prassolov V, Glauche I, Nowrouzi A, Abdollahi A, Fehse B, Simon C, Tolstonog GV.

Cell Rep. 2018 Nov 20;25(8):2208-2222.e7. doi: 10.1016/j.celrep.2018.10.090.

3.

Network Analysis Identifies Proinflammatory Plasma Cell Polarization for Secretion of ISG15 in Human Autoimmunity.

Care MA, Stephenson SJ, Barnes NA, Fan I, Zougman A, El-Sherbiny YM, Vital EM, Westhead DR, Tooze RM, Doody GM.

J Immunol. 2016 Aug 15;197(4):1447-59. doi: 10.4049/jimmunol.1600624. Epub 2016 Jun 29.

4.

C-STrap Sample Preparation Method--In-Situ Cysteinyl Peptide Capture for Bottom-Up Proteomics Analysis in the STrap Format.

Zougman A, Banks RE.

PLoS One. 2015 Sep 25;10(9):e0138775. doi: 10.1371/journal.pone.0138775. eCollection 2015.

5.

Suspension trapping (STrap) sample preparation method for bottom-up proteomics analysis.

Zougman A, Selby PJ, Banks RE.

Proteomics. 2014 May;14(9):1006-0. doi: 10.1002/pmic.201300553. Epub 2014 Mar 26.

PMID:
24678027
6.

MiR-26b is down-regulated in carcinoma-associated fibroblasts from ER-positive breast cancers leading to enhanced cell migration and invasion.

Verghese ET, Drury R, Green CA, Holliday DL, Lu X, Nash C, Speirs V, Thorne JL, Thygesen HH, Zougman A, Hull MA, Hanby AM, Hughes TA.

J Pathol. 2013 Nov;231(3):388-99. doi: 10.1002/path.4248.

7.

Predicting response to bevacizumab in ovarian cancer: a panel of potential biomarkers informing treatment selection.

Collinson F, Hutchinson M, Craven RA, Cairns DA, Zougman A, Wind TC, Gahir N, Messenger MP, Jackson S, Thompson D, Adusei C, Ledermann JA, Hall G, Jayson GC, Selby PJ, Banks RE.

Clin Cancer Res. 2013 Sep 15;19(18):5227-39. doi: 10.1158/1078-0432.CCR-13-0489. Epub 2013 Aug 9.

8.

Serum aminoacylase-1 is a novel biomarker with potential prognostic utility for long-term outcome in patients with delayed graft function following renal transplantation.

Welberry Smith MP, Zougman A, Cairns DA, Wilson M, Wind T, Wood SL, Thompson D, Messenger MP, Mooney A, Selby PJ, Lewington AJ, Banks RE.

Kidney Int. 2013 Dec;84(6):1214-25. doi: 10.1038/ki.2013.200. Epub 2013 Jun 5.

9.

Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age.

Craven RA, Cairns DA, Zougman A, Harnden P, Selby PJ, Banks RE.

Proteomics Clin Appl. 2013 Apr;7(3-4):273-82. doi: 10.1002/prca.201200065. Epub 2013 Mar 6.

10.

Retinoic acid-induced protein 3: identification and characterisation of a novel prognostic colon cancer biomarker.

Zougman A, Hutchins GG, Cairns DA, Verghese E, Perry SL, Jayne DG, Selby PJ, Banks RE.

Eur J Cancer. 2013 Jan;49(2):531-9. doi: 10.1016/j.ejca.2012.07.031. Epub 2012 Sep 26.

PMID:
23021913
11.

Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene.

Zougman A, Mann M, Wisniewski JR.

Nucleic Acids Res. 2011 Sep 1;39(16):7103-13. doi: 10.1093/nar/gkr273. Epub 2011 May 17.

12.

A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses.

Smith MP, Wood SL, Zougman A, Ho JT, Peng J, Jackson D, Cairns DA, Lewington AJ, Selby PJ, Banks RE.

Proteomics. 2011 Jun;11(11):2222-35. doi: 10.1002/pmic.201100005. Epub 2011 May 5.

13.

Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.

Wiśniewski JR, Nagaraj N, Zougman A, Gnad F, Mann M.

J Proteome Res. 2010 Jun 4;9(6):3280-9. doi: 10.1021/pr1002214.

PMID:
20415495
14.

Immunohistochemical and proteomic evaluation of nuclear ubiquitous casein and cyclin-dependent kinases substrate in invasive ductal carcinoma of the breast.

Ziółkowski P, Gamian E, Osiecka B, Zougman A, Wiśniewski JR.

J Biomed Biotechnol. 2009;2009:919645. doi: 10.1155/2009/919645. Epub 2009 Dec 24.

15.

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.

Wiśniewski JR, Zougman A, Mann M.

J Proteome Res. 2009 Dec;8(12):5674-8. doi: 10.1021/pr900748n.

PMID:
19848406
16.

Mapping of lysine monomethylation of linker histones in human breast and its cancer.

Lu A, Zougman A, Pudełko M, Bebenek M, Ziółkowski P, Mann M, Wiśniewski JR.

J Proteome Res. 2009 Sep;8(9):4207-15. doi: 10.1021/pr9000652.

PMID:
19552482
17.

Universal sample preparation method for proteome analysis.

Wiśniewski JR, Zougman A, Nagaraj N, Mann M.

Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19.

PMID:
19377485
18.

Identification of novel neuropeptides in the ventral nerve cord ganglia and their targets in an annelid worm, Eisenia fetida.

Herbert Z, Pollák E, Zougman A, Boros A, Kapan N, Molnár L.

J Comp Neurol. 2009 Jun 10;514(5):415-32. doi: 10.1002/cne.22043.

PMID:
19350635
19.

Evidence for insertional RNA editing in humans.

Zougman A, Ziółkowski P, Mann M, Wiśniewski JR.

Curr Biol. 2008 Nov 25;18(22):1760-5. doi: 10.1016/j.cub.2008.09.059. Epub 2008 Nov 6.

20.

Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics.

Wiśniewski JR, Zougman A, Krüger S, Ziółkowski P, Pudełko M, Bebenek M, Mann M.

Proteins. 2008 Nov 15;73(3):710-8. doi: 10.1002/prot.22104.

PMID:
18491381
22.

Integrated analysis of the cerebrospinal fluid peptidome and proteome.

Zougman A, Pilch B, Podtelejnikov A, Kiehntopf M, Schnabel C, Kumar C, Mann M.

J Proteome Res. 2008 Jan;7(1):386-99. Epub 2007 Dec 4.

PMID:
18052119
23.

Analysis of the mouse liver proteome using advanced mass spectrometry.

Shi R, Kumar C, Zougman A, Zhang Y, Podtelejnikov A, Cox J, Wiśniewski JR, Mann M.

J Proteome Res. 2007 Aug;6(8):2963-72. Epub 2007 Jul 3.

PMID:
17608399
24.

A proteomic screen for presynaptic terminal N-type calcium channel (CaV2.2) binding partners.

Khanna R, Zougman A, Stanley EF.

J Biochem Mol Biol. 2007 May 31;40(3):302-14.

PMID:
17562281
25.

MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.

Zhang Y, Zhang Y, Adachi J, Olsen JV, Shi R, de Souza G, Pasini E, Foster LJ, Macek B, Zougman A, Kumar C, Wisniewski JR, Jun W, Mann M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D771-9. Epub 2006 Nov 7.

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Proteomic, functional, and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization.

Jin J, Smith FD, Stark C, Wells CD, Fawcett JP, Kulkarni S, Metalnikov P, O'Donnell P, Taylor P, Taylor L, Zougman A, Woodgett JR, Langeberg LK, Scott JD, Pawson T.

Curr Biol. 2004 Aug 24;14(16):1436-50.

29.

RAM: a conserved signaling network that regulates Ace2p transcriptional activity and polarized morphogenesis.

Nelson B, Kurischko C, Horecka J, Mody M, Nair P, Pratt L, Zougman A, McBroom LD, Hughes TR, Boone C, Luca FC.

Mol Biol Cell. 2003 Sep;14(9):3782-803. Epub 2003 May 29.

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