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Items: 28

1.

Living in Cold Blood: Arcobacter, Campylobacter, and Helicobacter in Reptiles.

Gilbert MJ, Duim B, Zomer AL, Wagenaar JA.

Front Microbiol. 2019 May 15;10:1086. doi: 10.3389/fmicb.2019.01086. eCollection 2019. Review.

2.

Draft Genome Sequence of Streptococcus suis S10, a Virulent Strain Used in Experimental Pig Infections.

Gaiser RA, Zomer AL, Wells JM, van Baarlen P.

Microbiol Resour Announc. 2019 Jun 6;8(23). pii: e00227-19. doi: 10.1128/MRA.00227-19.

3.

Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring bla CMY-2 and bla SHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries.

Castellanos LR, van der Graaf-van Bloois L, Donado-Godoy P, Mevius DJ, Wagenaar JA, Hordijk J, Zomer AL.

Antimicrob Agents Chemother. 2019 Jun 24;63(7). pii: e02546-18. doi: 10.1128/AAC.02546-18. Print 2019 Jul.

PMID:
31085509
4.

Short-Term Hypoxia Dampens Inflammation in vivo via Enhanced Adenosine Release and Adenosine 2B Receptor Stimulation.

Kiers D, Wielockx B, Peters E, van Eijk LT, Gerretsen J, John A, Janssen E, Groeneveld R, Peters M, Damen L, Meneses AM, Krüger A, Langereis JD, Zomer AL, Blackburn MR, Joosten LA, Netea MG, Riksen NP, van der Hoeven JG, Scheffer GJ, Eltzschig HK, Pickkers P, Kox M.

EBioMedicine. 2018 Jul;33:144-156. doi: 10.1016/j.ebiom.2018.06.021. Epub 2018 Jul 4.

5.

Immunomodulation and effects on microbiota after in ovo administration of chicken cathelicidin-2.

Cuperus T, Kraaij MD, Zomer AL, van Dijk A, Haagsman HP.

PLoS One. 2018 Jun 5;13(6):e0198188. doi: 10.1371/journal.pone.0198188. eCollection 2018.

6.

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.

Cremers AJH, Mobegi FM, van der Gaast-de Jongh C, van Weert M, van Opzeeland FJ, Vehkala M, Knol MJ, Bootsma HJ, Välimäki N, Croucher NJ, Meis JF, Bentley S, van Hijum SAFT, Corander J, Zomer AL, Ferwerda G, de Jonge MI.

Clin Infect Dis. 2019 Jan 1;68(1):61-69. doi: 10.1093/cid/ciy417.

PMID:
29788414
7.

Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-García A, Rossen JW, Duim B, Wagenaar JA.

Int J Syst Evol Microbiol. 2018 May;68(5):1787-1794. doi: 10.1099/ijsem.0.002742. Epub 2018 Apr 6.

PMID:
29624164
8.

Homologous Recombination between Genetically Divergent Campylobacter fetus Lineages Supports Host-Associated Speciation.

Gilbert MJ, Duim B, van der Graaf-van Bloois L, Wagenaar JA, Zomer AL.

Genome Biol Evol. 2018 Mar 1;10(3):716-722. doi: 10.1093/gbe/evy048.

9.

Streptococcus pneumoniae PspC Subgroup Prevalence in Invasive Disease and Differences in Contribution to Complement Evasion.

van der Maten E, van den Broek B, de Jonge MI, Rensen KJW, Eleveld MJ, Zomer AL, Cremers AJH, Ferwerda G, de Groot R, Langereis JD, van der Flier M.

Infect Immun. 2018 Mar 22;86(4). pii: e00010-18. doi: 10.1128/IAI.00010-18. Print 2018 Apr.

10.

Peripheral blood vessels are a niche for blood-borne meningococci.

Capel E, Barnier JP, Zomer AL, Bole-Feysot C, Nussbaumer T, Jamet A, Lécuyer H, Euphrasie D, Virion Z, Frapy E, Pélissier P, Join-Lambert O, Rattei T, Bourdoulous S, Nassif X, Coureuil M.

Virulence. 2017 Nov 17;8(8):1808-1819. doi: 10.1080/21505594.2017.1391446. Epub 2017 Nov 27.

11.

[Outbreak of Campylobacter fetus infection after consumption of unpasteurized sheep's milk cheeses: how to trace the source?]

Koppenaal H, Groenendijk F, van den Berge M, Verkade E, Verduin K, Zomer AL, Duim B, Wagenaar JA, Tijsma ASL, Spierenburg MAH, te Wierik MJM.

Ned Tijdschr Geneeskd. 2017;161:D1704. Review. Dutch.

PMID:
29057727
12.

Whole genome-based phylogeny of reptile-associated Helicobacter indicates independent niche adaptation followed by diversification in a poikilothermic host.

Gilbert MJ, Duim B, Timmerman AJ, Zomer AL, Wagenaar JA.

Sci Rep. 2017 Aug 21;7(1):8387. doi: 10.1038/s41598-017-09091-7.

13.

Plasmids of Distinct IncK Lineages Show Compatible Phenotypes.

Rozwandowicz M, Brouwer MS, Zomer AL, Bossers A, Harders F, Mevius DJ, Wagenaar JA, Hordijk J.

Antimicrob Agents Chemother. 2017 Feb 23;61(3). pii: e01954-16. doi: 10.1128/AAC.01954-16. Print 2017 Mar.

14.

Comparative Genomics of Campylobacter iguaniorum to Unravel Genetic Regions Associated with Reptilian Hosts.

Gilbert MJ, Miller WG, Yee E, Kik M, Zomer AL, Wagenaar JA, Duim B.

Genome Biol Evol. 2016 Oct 5;8(9):3022-3029.

15.

Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization.

Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E, Meyer J, Bouzinba-Ségard H, Bille E, Jamet A, Cavau A, Letourneur F, Bourdoulous S, Rattei T, Nassif X, Coureuil M.

MBio. 2016 Aug 2;7(4). pii: e01173-16. doi: 10.1128/mBio.01173-16.

16.

Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages.

Gilbert MJ, Miller WG, Yee E, Zomer AL, van der Graaf-van Bloois L, Fitzgerald C, Forbes KJ, Méric G, Sheppard SK, Wagenaar JA, Duim B.

Genome Biol Evol. 2016 Jul 2;8(6):2006-19. doi: 10.1093/gbe/evw146.

17.

Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids.

Graaf-van Bloois Lv, Miller WG, Yee E, Gorkiewicz G, Forbes KJ, Zomer AL, Wagenaar JA, Duim B.

PLoS One. 2016 Apr 6;11(4):e0152832. doi: 10.1371/journal.pone.0152832. eCollection 2016.

18.

The post-vaccine microevolution of invasive Streptococcus pneumoniae.

Cremers AJ, Mobegi FM, de Jonge MI, van Hijum SA, Meis JF, Hermans PW, Ferwerda G, Bentley SD, Zomer AL.

Sci Rep. 2015 Oct 23;5:14952. doi: 10.1038/srep14952.

19.

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition.

Cremers AJ, Zomer AL, Gritzfeld JF, Ferwerda G, van Hijum SA, Ferreira DM, Shak JR, Klugman KP, Boekhorst J, Timmerman HM, de Jonge MI, Gordon SB, Hermans PW.

Microbiome. 2014 Dec 15;2:44. doi: 10.1186/2049-2618-2-44. eCollection 2014.

20.

Bacterial lipopolysaccharide inhibits influenza virus infection of human macrophages and the consequent induction of CD8+ T cell immunity.

Short KR, Vissers M, de Kleijn S, Zomer AL, Kedzierska K, Grant E, Reading PC, Hermans PW, Ferwerda G, Diavatopoulos DA.

J Innate Immun. 2014;6(2):129-39. doi: 10.1159/000353905. Epub 2013 Aug 20.

21.

Supervised Lowess normalization of comparative genome hybridization data--application to lactococcal strain comparisons.

van Hijum SA, Baerends RJ, Zomer AL, Karsens HA, Martin-Requena V, Trelles O, Kok J, Kuipers OP.

BMC Bioinformatics. 2008 Feb 11;9:93. doi: 10.1186/1471-2105-9-93.

22.

Cell envelope stress induced by the bacteriocin Lcn972 is sensed by the Lactococcal two-component system CesSR.

Martínez B, Zomer AL, Rodríguez A, Kok J, Kuipers OP.

Mol Microbiol. 2007 Apr;64(2):473-86.

23.

Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

Zomer AL, Buist G, Larsen R, Kok J, Kuipers OP.

J Bacteriol. 2007 Feb;189(4):1366-81. Epub 2006 Oct 6.

24.

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.

van Hijum SA, Zomer AL, Kuipers OP, Kok J.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W560-6.

25.

Comparative and functional genomics of lactococci.

Kok J, Buist G, Zomer AL, van Hijum SA, Kuipers OP.

FEMS Microbiol Rev. 2005 Aug;29(3):411-33. Review.

26.

Projector: automatic contig mapping for gap closure purposes.

van Hijum SA, Zomer AL, Kuipers OP, Kok J.

Nucleic Acids Res. 2003 Nov 15;31(22):e144.

27.

Cell wall attachment of a widely distributed peptidoglycan binding domain is hindered by cell wall constituents.

Steen A, Buist G, Leenhouts KJ, El Khattabi M, Grijpstra F, Zomer AL, Venema G, Kuipers OP, Kok J.

J Biol Chem. 2003 Jun 27;278(26):23874-81. Epub 2003 Apr 8.

28.

Transcriptome analysis and related databases of Lactococcus lactis.

Kuipers OP, de Jong A, Baerends RJ, van Hijum SA, Zomer AL, Karsens HA, den Hengst CD, Kramer NE, Buist G, Kok J.

Antonie Van Leeuwenhoek. 2002 Aug;82(1-4):113-22. Review.

PMID:
12369183

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