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Items: 1 to 50 of 129

1.

Living in Cold Blood: Arcobacter, Campylobacter, and Helicobacter in Reptiles.

Gilbert MJ, Duim B, Zomer AL, Wagenaar JA.

Front Microbiol. 2019 May 15;10:1086. doi: 10.3389/fmicb.2019.01086. eCollection 2019. Review.

2.

Draft Genome Sequence of Streptococcus suis S10, a Virulent Strain Used in Experimental Pig Infections.

Gaiser RA, Zomer AL, Wells JM, van Baarlen P.

Microbiol Resour Announc. 2019 Jun 6;8(23). pii: e00227-19. doi: 10.1128/MRA.00227-19.

3.

Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring bla CMY-2 and bla SHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries.

Castellanos LR, van der Graaf-van Bloois L, Donado-Godoy P, Mevius DJ, Wagenaar JA, Hordijk J, Zomer AL.

Antimicrob Agents Chemother. 2019 Jun 24;63(7). pii: e02546-18. doi: 10.1128/AAC.02546-18. Print 2019 Jul.

PMID:
31085509
4.

Zoonotic Endocarditis in a Man, the Netherlands.

Sleutjens J, Meijer D, Meregalli PG, Bakker L, Wagenaar JA, Duim B, Zomer A.

Emerg Infect Dis. 2019 Jan;25(1):180-182. doi: 10.3201/eid2501.181029.

5.

Genomic Characterization of Extended-Spectrum Cephalosporin-Resistant Salmonella enterica in the Colombian Poultry Chain.

Castellanos LR, van der Graaf-van Bloois L, Donado-Godoy P, León M, Clavijo V, Arévalo A, Bernal JF, Mevius DJ, Wagenaar JA, Zomer A, Hordijk J.

Front Microbiol. 2018 Oct 26;9:2431. doi: 10.3389/fmicb.2018.02431. eCollection 2018.

6.

Comparative genomics of phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius of canine origin.

Wegener A, Broens EM, Zomer A, Spaninks M, Wagenaar JA, Duim B.

Vet Microbiol. 2018 Nov;225:125-131. doi: 10.1016/j.vetmic.2018.09.013. Epub 2018 Sep 22.

PMID:
30322524
7.

Short-Term Hypoxia Dampens Inflammation in vivo via Enhanced Adenosine Release and Adenosine 2B Receptor Stimulation.

Kiers D, Wielockx B, Peters E, van Eijk LT, Gerretsen J, John A, Janssen E, Groeneveld R, Peters M, Damen L, Meneses AM, Krüger A, Langereis JD, Zomer AL, Blackburn MR, Joosten LA, Netea MG, Riksen NP, van der Hoeven JG, Scheffer GJ, Eltzschig HK, Pickkers P, Kox M.

EBioMedicine. 2018 Jul;33:144-156. doi: 10.1016/j.ebiom.2018.06.021. Epub 2018 Jul 4.

8.

Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles.

Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J.

EMBO J. 2018 Aug 1;37(15). pii: e98357. doi: 10.15252/embj.201798357. Epub 2018 Jun 14.

9.

Immunomodulation and effects on microbiota after in ovo administration of chicken cathelicidin-2.

Cuperus T, Kraaij MD, Zomer AL, van Dijk A, Haagsman HP.

PLoS One. 2018 Jun 5;13(6):e0198188. doi: 10.1371/journal.pone.0198188. eCollection 2018.

10.

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.

Cremers AJH, Mobegi FM, van der Gaast-de Jongh C, van Weert M, van Opzeeland FJ, Vehkala M, Knol MJ, Bootsma HJ, Välimäki N, Croucher NJ, Meis JF, Bentley S, van Hijum SAFT, Corander J, Zomer AL, Ferwerda G, de Jonge MI.

Clin Infect Dis. 2019 Jan 1;68(1):61-69. doi: 10.1093/cid/ciy417.

PMID:
29788414
11.

Bordetella pertussis population dynamics and phylogeny in Japan after adoption of acellular pertussis vaccines.

Zomer A, Otsuka N, Hiramatsu Y, Kamachi K, Nishimura N, Ozaki T, Poolman J, Geurtsen J.

Microb Genom. 2018 May;4(5). doi: 10.1099/mgen.0.000180. Epub 2018 May 17.

12.

Glycosylated extracellular vesicles released by glioblastoma cells are decorated by CCL18 allowing for cellular uptake via chemokine receptor CCR8.

Berenguer J, Lagerweij T, Zhao XW, Dusoswa S, van der Stoop P, Westerman B, de Gooijer MC, Zoetemelk M, Zomer A, Crommentuijn MHW, Wedekind LE, López-López À, Giovanazzi A, Bruch-Oms M, van der Meulen-Muileman IH, Reijmers RM, van Kuppevelt TH, García-Vallejo JJ, van Kooyk Y, Tannous BA, Wesseling P, Koppers-Lalic D, Vandertop WP, Noske DP, van Beusechem VW, van Rheenen J, Pegtel DM, van Tellingen O, Wurdinger T.

J Extracell Vesicles. 2018 Mar 13;7(1):1446660. doi: 10.1080/20013078.2018.1446660. eCollection 2018.

13.

Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-García A, Rossen JW, Duim B, Wagenaar JA.

Int J Syst Evol Microbiol. 2018 May;68(5):1787-1794. doi: 10.1099/ijsem.0.002742. Epub 2018 Apr 6.

PMID:
29624164
14.

Homologous Recombination between Genetically Divergent Campylobacter fetus Lineages Supports Host-Associated Speciation.

Gilbert MJ, Duim B, van der Graaf-van Bloois L, Wagenaar JA, Zomer AL.

Genome Biol Evol. 2018 Mar 1;10(3):716-722. doi: 10.1093/gbe/evy048.

15.

Adaptation of Bordetella pertussis to the Respiratory Tract.

van Beek LF, de Gouw D, Eleveld MJ, Bootsma HJ, de Jonge MI, Mooi FR, Zomer A, Diavatopoulos DA.

J Infect Dis. 2018 May 25;217(12):1987-1996. doi: 10.1093/infdis/jiy125.

PMID:
29528444
16.

A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant.

Lavelle K, Murphy J, Fitzgerald B, Lugli GA, Zomer A, Neve H, Ventura M, Franz CM, Cambillau C, van Sinderen D, Mahony J.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e02855-17. doi: 10.1128/AEM.02855-17. Print 2018 May 15.

17.

Streptococcus pneumoniae PspC Subgroup Prevalence in Invasive Disease and Differences in Contribution to Complement Evasion.

van der Maten E, van den Broek B, de Jonge MI, Rensen KJW, Eleveld MJ, Zomer AL, Cremers AJH, Ferwerda G, de Groot R, Langereis JD, van der Flier M.

Infect Immun. 2018 Mar 22;86(4). pii: e00010-18. doi: 10.1128/IAI.00010-18. Print 2018 Apr.

18.

Correction: Quantifying exosome secretion from single cells reveals a modulatory role for GPCR signaling.

Verweij FJ, Bebelman MP, Jimenez CR, Garcia-Vallejo JJ, Janssen H, Neefjes J, Knol JC, de Goeij-de Haas R, Piersma SR, Baglio SR, Verhage M, Middeldorp JM, Zomer A, van Rheenen J, Coppolino MG, Hurbain I, Raposo G, Smit MJ, Toonen RFG, van Niel G, Pegtel DM.

J Cell Biol. 2018 Mar 5;217(3):1157. doi: 10.1083/JCB.20170320601192018c. Epub 2018 Jan 23. No abstract available.

19.

Quantifying exosome secretion from single cells reveals a modulatory role for GPCR signaling.

Verweij FJ, Bebelman MP, Jimenez CR, Garcia-Vallejo JJ, Janssen H, Neefjes J, Knol JC, de Goeij-de Haas R, Piersma SR, Baglio SR, Verhage M, Middeldorp JM, Zomer A, van Rheenen J, Coppolino MG, Hurbain I, Raposo G, Smit MJ, Toonen RFG, van Niel G, Pegtel DM.

J Cell Biol. 2018 Mar 5;217(3):1129-1142. doi: 10.1083/jcb.201703206. Epub 2018 Jan 16. Erratum in: J Cell Biol. 2018 Jan 23;:.

20.

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

Bottacini F, Zomer A, Milani C, Ferrario C, Lugli GA, Egan M, Ventura M, van Sinderen D.

BMC Genomics. 2017 Dec 28;18(1):991. doi: 10.1186/s12864-017-4387-x.

21.

Peripheral blood vessels are a niche for blood-borne meningococci.

Capel E, Barnier JP, Zomer AL, Bole-Feysot C, Nussbaumer T, Jamet A, Lécuyer H, Euphrasie D, Virion Z, Frapy E, Pélissier P, Join-Lambert O, Rattei T, Bourdoulous S, Nassif X, Coureuil M.

Virulence. 2017 Nov 17;8(8):1808-1819. doi: 10.1080/21505594.2017.1391446. Epub 2017 Nov 27.

22.

[Outbreak of Campylobacter fetus infection after consumption of unpasteurized sheep's milk cheeses: how to trace the source?]

Koppenaal H, Groenendijk F, van den Berge M, Verkade E, Verduin K, Zomer AL, Duim B, Wagenaar JA, Tijsma ASL, Spierenburg MAH, te Wierik MJM.

Ned Tijdschr Geneeskd. 2017;161:D1704. Review. Dutch.

PMID:
29057727
23.

Whole genome-based phylogeny of reptile-associated Helicobacter indicates independent niche adaptation followed by diversification in a poikilothermic host.

Gilbert MJ, Duim B, Timmerman AJ, Zomer AL, Wagenaar JA.

Sci Rep. 2017 Aug 21;7(1):8387. doi: 10.1038/s41598-017-09091-7.

24.

Th17-Mediated Cross Protection against Pneumococcal Carriage by Vaccination with a Variable Antigen.

Kuipers K, Jong WSP, van der Gaast-de Jongh CE, Houben D, van Opzeeland F, Simonetti E, van Selm S, de Groot R, Koenders MI, Azarian T, Pupo E, van der Ley P, Langereis JD, Zomer A, Luirink J, de Jonge MI.

Infect Immun. 2017 Sep 20;85(10). pii: e00281-17. doi: 10.1128/IAI.00281-17. Print 2017 Oct.

25.

Prospective observational study in two Dutch hospitals to assess the performance of inflammatory plasma markers to determine disease severity of viral respiratory tract infections in children.

Ahout IML, Brand KH, Zomer A, van den Hurk WH, Schilders G, Brouwer ML, Neeleman C, Groot R, Ferwerda G.

BMJ Open. 2017 Jun 30;7(6):e014596. doi: 10.1136/bmjopen-2016-014596.

26.

Chance of surgery in adult congenital heart disease.

Verheugt CL, Uiterwaal CS, Vaartjes I, van der Velde ET, Zomer AC, Meijboom FJ, Pieper PG, Post MC, Vliegen HW, Hazekamp MG, Grobbee DE, Mulder BJ.

Eur J Prev Cardiol. 2017 Aug;24(12):1319-1327. doi: 10.1177/2047487317710355. Epub 2017 May 25.

PMID:
28541122
27.

Genome-wide fitness analyses of the foodborne pathogen Campylobacter jejuni in in vitro and in vivo models.

de Vries SP, Gupta S, Baig A, Wright E, Wedley A, Jensen AN, Lora LL, Humphrey S, Skovgård H, Macleod K, Pont E, Wolanska DP, L'Heureux J, Mobegi FM, Smith DGE, Everest P, Zomer A, Williams N, Wigley P, Humphrey T, Maskell DJ, Grant AJ.

Sci Rep. 2017 Apr 28;7(1):1251. doi: 10.1038/s41598-017-01133-4.

28.

Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data.

Mobegi FM, Cremers AJ, de Jonge MI, Bentley SD, van Hijum SA, Zomer A.

Sci Rep. 2017 Feb 16;7:42808. doi: 10.1038/srep42808.

29.

Identity and dynamics of mammary stem cells during branching morphogenesis.

Scheele CL, Hannezo E, Muraro MJ, Zomer A, Langedijk NS, van Oudenaarden A, Simons BD, van Rheenen J.

Nature. 2017 Feb 16;542(7641):313-317. doi: 10.1038/nature21046. Epub 2017 Jan 30.

30.

Phage-Derived Protein Induces Increased Platelet Activation and Is Associated with Mortality in Patients with Invasive Pneumococcal Disease.

Tunjungputri RN, Mobegi FM, Cremers AJ, van der Gaast-de Jongh CE, Ferwerda G, Meis JF, Roeleveld N, Bentley SD, Pastura AS, van Hijum SA, van der Ven AJ, de Mast Q, Zomer A, de Jonge MI.

MBio. 2017 Jan 17;8(1). pii: e01984-16. doi: 10.1128/mBio.01984-16.

31.

Plasmids of Distinct IncK Lineages Show Compatible Phenotypes.

Rozwandowicz M, Brouwer MS, Zomer AL, Bossers A, Harders F, Mevius DJ, Wagenaar JA, Hordijk J.

Antimicrob Agents Chemother. 2017 Feb 23;61(3). pii: e01954-16. doi: 10.1128/AAC.01954-16. Print 2017 Mar.

32.

Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes.

Nebenzahl-Guimaraes H, van Laarhoven A, Farhat MR, Koeken VACM, Mandemakers JJ, Zomer A, van Hijum SAFT, Netea MG, Murray M, van Crevel R, van Soolingen D.

Am J Respir Crit Care Med. 2017 Jun 1;195(11):1519-1527. doi: 10.1164/rccm.201605-1042OC.

33.

Transcriptome assists prognosis of disease severity in respiratory syncytial virus infected infants.

Jong VL, Ahout IM, van den Ham HJ, Jans J, Zaaraoui-Boutahar F, Zomer A, Simonetti E, Bijl MA, Brand HK, van IJcken WF, de Jonge MI, Fraaij PL, de Groot R, Osterhaus AD, Eijkemans MJ, Ferwerda G, Andeweg AC.

Sci Rep. 2016 Nov 11;6:36603. doi: 10.1038/srep36603.

34.

Comparative Genomics of Campylobacter iguaniorum to Unravel Genetic Regions Associated with Reptilian Hosts.

Gilbert MJ, Miller WG, Yee E, Kik M, Zomer AL, Wagenaar JA, Duim B.

Genome Biol Evol. 2016 Oct 5;8(9):3022-3029.

35.

Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production.

van der Graaf-van Bloois L, Duim B, Miller WG, Forbes KJ, Wagenaar JA, Zomer A.

BMC Genomics. 2016 Sep 6;17:713. doi: 10.1186/s12864-016-3058-7.

36.

Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization.

Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E, Meyer J, Bouzinba-Ségard H, Bille E, Jamet A, Cavau A, Letourneur F, Bourdoulous S, Rattei T, Nassif X, Coureuil M.

MBio. 2016 Aug 2;7(4). pii: e01173-16. doi: 10.1128/mBio.01173-16.

37.

Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages.

Gilbert MJ, Miller WG, Yee E, Zomer AL, van der Graaf-van Bloois L, Fitzgerald C, Forbes KJ, Méric G, Sheppard SK, Wagenaar JA, Duim B.

Genome Biol Evol. 2016 Jul 2;8(6):2006-19. doi: 10.1093/gbe/evw146.

38.

Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids.

Graaf-van Bloois Lv, Miller WG, Yee E, Gorkiewicz G, Forbes KJ, Zomer AL, Wagenaar JA, Duim B.

PLoS One. 2016 Apr 6;11(4):e0152832. doi: 10.1371/journal.pone.0152832. eCollection 2016.

39.

Implications of Extracellular Vesicle Transfer on Cellular Heterogeneity in Cancer: What Are the Potential Clinical Ramifications?

Zomer A, van Rheenen J.

Cancer Res. 2016 Apr 15;76(8):2071-5. doi: 10.1158/0008-5472.CAN-15-2804. Epub 2016 Mar 31. Review.

40.

Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages.

Murphy J, Bottacini F, Mahony J, Kelleher P, Neve H, Zomer A, Nauta A, van Sinderen D.

Sci Rep. 2016 Feb 19;6:21345. doi: 10.1038/srep21345.

41.

Advances and perspectives in computational prediction of microbial gene essentiality.

Mobegi FM, Zomer A, de Jonge MI, van Hijum SA.

Brief Funct Genomics. 2017 Mar 1;16(2):70-79. doi: 10.1093/bfgp/elv063. Review.

PMID:
26857942
42.

Highly conserved nucleotide phosphatase essential for membrane lipid homeostasis in Streptococcus pneumoniae.

Kuipers K, Gallay C, Martínek V, Rohde M, Martínková M, van der Beek SL, Jong WS, Venselaar H, Zomer A, Bootsma H, Veening JW, de Jonge MI.

Mol Microbiol. 2016 Jul;101(1):12-26. doi: 10.1111/mmi.13312. Epub 2016 Feb 19.

43.

Studying extracellular vesicle transfer by a Cre-loxP method.

Zomer A, Steenbeek SC, Maynard C, van Rheenen J.

Nat Protoc. 2016 Jan;11(1):87-101. doi: 10.1038/nprot.2015.138. Epub 2015 Dec 10.

PMID:
26658469
44.

The post-vaccine microevolution of invasive Streptococcus pneumoniae.

Cremers AJ, Mobegi FM, de Jonge MI, van Hijum SA, Meis JF, Hermans PW, Ferwerda G, Bentley SD, Zomer AL.

Sci Rep. 2015 Oct 23;5:14952. doi: 10.1038/srep14952.

45.

The vaccine potential of Bordetella pertussis biofilm-derived membrane proteins.

de Gouw D, Serra DO, de Jonge MI, Hermans PW, Wessels HJ, Zomer A, Yantorno OM, Diavatopoulos DA, Mooi FR.

Emerg Microbes Infect. 2014 Aug;3(8):e58. doi: 10.1038/emi.2014.58. Epub 2014 Aug 20.

46.

In Vivo imaging reveals extracellular vesicle-mediated phenocopying of metastatic behavior.

Zomer A, Maynard C, Verweij FJ, Kamermans A, Schäfer R, Beerling E, Schiffelers RM, de Wit E, Berenguer J, Ellenbroek SIJ, Wurdinger T, Pegtel DM, van Rheenen J.

Cell. 2015 May 21;161(5):1046-1057. doi: 10.1016/j.cell.2015.04.042.

47.

Secundum atrial septal defect is associated with reduced survival in adult men.

Kuijpers JM, van der Bom T, van Riel AC, Meijboom FJ, van Dijk AP, Pieper PG, Vliegen HW, Waskowsky WM, Oomen T, Zomer AC, Wagenaar LJ, Heesen WF, Roos-Hesselink JW, Zwinderman AH, Mulder BJ, Bouma BJ.

Eur Heart J. 2015 Aug 14;36(31):2079-2086. Epub 2015 Apr 16.

PMID:
25883174
48.

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition.

Cremers AJ, Zomer AL, Gritzfeld JF, Ferwerda G, van Hijum SA, Ferreira DM, Shak JR, Klugman KP, Boekhorst J, Timmerman HM, de Jonge MI, Gordon SB, Hermans PW.

Microbiome. 2014 Dec 15;2:44. doi: 10.1186/2049-2618-2-44. eCollection 2014.

49.

From microbial gene essentiality to novel antimicrobial drug targets.

Mobegi FM, van Hijum SA, Burghout P, Bootsma HJ, de Vries SP, van der Gaast-de Jongh CE, Simonetti E, Langereis JD, Hermans PW, de Jonge MI, Zomer A.

BMC Genomics. 2014 Nov 5;15:958. doi: 10.1186/1471-2164-15-958.

50.

Nasopharyngeal gene expression, a novel approach to study the course of respiratory syncytial virus infection.

van den Kieboom CH, Ahout IM, Zomer A, Brand KH, de Groot R, Ferwerda G, de Jonge MI.

Eur Respir J. 2015 Mar;45(3):718-25. doi: 10.1183/09031936.00085614. Epub 2014 Sep 26.

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