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Items: 50

1.

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Duranti S, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Milani C, Mangifesta M, Anzalone R, Viappiani A, Yassour M, Vlamakis H, Xavier R, Collado CM, Koren O, Tateo S, Soffiati M, Pedrotti A, Ventura M, Huttenhower C, Bork P, Segata N.

Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5. doi: 10.1016/j.chom.2018.06.005.

2.

Profiling microbial strains in urban environments using metagenomic sequencing data.

Zolfo M, Asnicar F, Manghi P, Pasolli E, Tett A, Segata N.

Biol Direct. 2018 May 9;13(1):9. doi: 10.1186/s13062-018-0211-z.

3.

Correction for Pinto et al., "Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Strains from a Freshwater Ecosystem".

Pinto F, Tett A, Armanini F, Asnicar F, Boscaini A, Pasolli E, Zolfo M, Donati C, Salmaso N, Segata N.

Genome Announc. 2018 Mar 8;6(10). pii: e00169-18. doi: 10.1128/genomeA.00169-18. No abstract available.

4.

Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem.

Pinto F, Tett A, Armanini F, Asnicar F, Boscaini A, Pasolli E, Zolfo M, Donati C, Salmaso N, Segata N.

Genome Announc. 2018 Feb 1;6(5). pii: e00009-18. doi: 10.1128/genomeA.00009-18. Erratum in: Genome Announc. 2018 Mar 8;6(10 ):.

5.

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater.

Pinto F, Tett A, Armanini F, Asnicar F, Boscaini A, Pasolli E, Zolfo M, Donati C, Salmaso N, Segata N.

Genome Announc. 2017 Nov 22;5(47). pii: e01294-17. doi: 10.1128/genomeA.01294-17.

6.

Open-Source Electronic Health Record Systems for Low-Resource Settings: Systematic Review.

Syzdykova A, Malta A, Zolfo M, Diro E, Oliveira JL.

JMIR Med Inform. 2017 Nov 13;5(4):e44. doi: 10.2196/medinform.8131. Review.

7.

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission.

Duranti S, Lugli GA, Mancabelli L, Armanini F, Turroni F, James K, Ferretti P, Gorfer V, Ferrario C, Milani C, Mangifesta M, Anzalone R, Zolfo M, Viappiani A, Pasolli E, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Fedi S, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Soffiati M, Tateo S, Pedrotti A, Segata N, van Sinderen D, Ventura M.

Microbiome. 2017 Jun 26;5(1):66. doi: 10.1186/s40168-017-0282-6.

8.

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis.

Tett A, Pasolli E, Farina S, Truong DT, Asnicar F, Zolfo M, Beghini F, Armanini F, Jousson O, De Sanctis V, Bertorelli R, Girolomoni G, Cristofolini M, Segata N.

NPJ Biofilms Microbiomes. 2017 Jun 22;3:14. doi: 10.1038/s41522-017-0022-5. eCollection 2017.

9.

Community Health Volunteers in Primary Healthcare in Rural Uganda: Factors Influencing Performance.

Kuule Y, Dobson AE, Woldeyohannes D, Zolfo M, Najjemba R, Edwin BMR, Haven N, Verdonck K, Owiti P, Wilkinson E.

Front Public Health. 2017 Mar 29;5:62. doi: 10.3389/fpubh.2017.00062. eCollection 2017.

10.

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling.

Asnicar F, Manara S, Zolfo M, Truong DT, Scholz M, Armanini F, Ferretti P, Gorfer V, Pedrotti A, Tett A, Segata N.

mSystems. 2017 Jan 17;2(1). pii: e00164-16. doi: 10.1128/mSystems.00164-16. eCollection 2017 Jan-Feb.

11.

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.

Zolfo M, Tett A, Jousson O, Donati C, Segata N.

Nucleic Acids Res. 2017 Jan 25;45(2):e7. doi: 10.1093/nar/gkw837. Epub 2016 Sep 19.

12.

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing.

Donati C, Zolfo M, Albanese D, Tin Truong D, Asnicar F, Iebba V, Cavalieri D, Jousson O, De Filippo C, Huttenhower C, Segata N.

Nat Microbiol. 2016 May 27;1(7):16070. doi: 10.1038/nmicrobiol.2016.70.

PMID:
27572971
13.

Strain-level microbial epidemiology and population genomics from shotgun metagenomics.

Scholz M, Ward DV, Pasolli E, Tolio T, Zolfo M, Asnicar F, Truong DT, Tett A, Morrow AL, Segata N.

Nat Methods. 2016 May;13(5):435-8. doi: 10.1038/nmeth.3802. Epub 2016 Mar 21.

PMID:
26999001
14.

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants.

Ward DV, Scholz M, Zolfo M, Taft DH, Schibler KR, Tett A, Segata N, Morrow AL.

Cell Rep. 2016 Mar 29;14(12):2912-24. doi: 10.1016/j.celrep.2016.03.015. Epub 2016 Mar 17.

15.

Enhancing research capacity of African institutions through social networking.

Jimenez-Castellanos A, Ramirez-Robles M, Shousha A, Bagayoko CO, Perrin C, Zolfo M, Cuzin A, Roland A, Aryeetey R, Maojo V.

Stud Health Technol Inform. 2013;192:1099.

PMID:
23920873
16.

Nucleoside reverse transcriptase inhibitor resistance mutations associated with first-line stavudine-containing antiretroviral therapy: programmatic implications for countries phasing out stavudine.

Tang MW, Rhee SY, Bertagnolio S, Ford N, Holmes S, Sigaloff KC, Hamers RL, de Wit TF, Fleury HJ, Kanki PJ, Ruxrungtham K, Hawkins CA, Wallis CL, Stevens W, van Zyl GU, Manosuthi W, Hosseinipour MC, Ngo-Giang-Huong N, Belec L, Peeters M, Aghokeng A, Bunupuradah T, Burda S, Cane P, Cappelli G, Charpentier C, Dagnra AY, Deshpande AK, El-Katib Z, Eshleman SH, Fokam J, Gody JC, Katzenstein D, Koyalta DD, Kumwenda JJ, Lallemant M, Lynen L, Marconi VC, Margot NA, Moussa S, Ndung'u T, Nyambi PN, Orrell C, Schapiro JM, Schuurman R, Sirivichayakul S, Smith D, Zolfo M, Jordan MR, Shafer RW.

J Infect Dis. 2013 Jun 15;207 Suppl 2:S70-7. doi: 10.1093/infdis/jit114.

17.

Feasibility of a clearing house for improved cooperation between telemedicine networks delivering humanitarian services: acceptability to network coordinators.

Wootton R, Bonnardot L, Geissbuhler A, Jethwani K, Kovarik C, McGoey S, Person DA, Vladzymyrskyy A, Zolfo M.

Glob Health Action. 2012 Oct 9;5:18713. doi: 10.3402/gha.v5i0.18713.

18.

Comparative performance of seven long-running telemedicine networks delivering humanitarian services.

Wootton R, Geissbuhler A, Jethwani K, Kovarik C, Person DA, Vladzymyrskyy A, Zanaboni P, Zolfo M.

J Telemed Telecare. 2012 Sep;18(6):305-11. doi: 10.1258/jtt.2012.120315. Epub 2012 Aug 6.

PMID:
22869822
19.

Long-running telemedicine networks delivering humanitarian services: experience, performance and scientific output.

Wootton R, Geissbuhler A, Jethwani K, Kovarik C, Person DA, Vladzymyrskyy A, Zanaboni P, Zolfo M.

Bull World Health Organ. 2012 May 1;90(5):341-347D. doi: 10.2471/BLT.11.099143.

20.
21.

Experience with low-cost telemedicine in three different settings. Recommendations based on a proposed framework for network performance evaluation.

Wootton R, Vladzymyrskyy A, Zolfo M, Bonnardot L.

Glob Health Action. 2011;4. doi: 10.3402/gha.v4i0.7214. Epub 2011 Dec 6.

22.

Prevention of mother-to-child transmission of HIV and the health-related Millennium Development Goals: time for a public health approach.

Schouten EJ, Jahn A, Midiani D, Makombe SD, Mnthambala A, Chirwa Z, Harries AD, van Oosterhout JJ, Meguid T, Ben-Smith A, Zachariah R, Lynen L, Zolfo M, Van Damme W, Gilks CF, Atun R, Shawa M, Chimbwandira F.

Lancet. 2011 Jul 16;378(9787):282-4. doi: 10.1016/S0140-6736(10)62303-3. No abstract available.

PMID:
21763940
23.

Challenges in developing national HIV guidelines: experience from the eastern Mediterranean.

De Weggheleire A, Bortolotti V, Zolfo M, Crowley S, Colebunders R, Riedner G, Lynen L.

Bull World Health Organ. 2011 Jun 1;89(6):442-50. doi: 10.2471/BLT.10.083790. Epub 2011 Apr 29.

24.

A telemedicine service for HIV/AIDS physicians working in developing countries.

Zolfo M, Bateganya MH, Adetifa IM, Colebunders R, Lynen L.

J Telemed Telecare. 2011;17(2):65-70. doi: 10.1258/jtt.2010.100308. Epub 2010 Nov 15.

PMID:
21078680
25.

Genotypic impact of prolonged detectable HIV type 1 RNA viral load after HAART failure in a CRF01_AE-infected cohort.

Zolfo M, Schapiro JM, Phan V, Koole O, Thai S, Vekemans M, Fransen K, Lynen L.

AIDS Res Hum Retroviruses. 2011 Jul;27(7):727-35. doi: 10.1089/AID.2010.0037. Epub 2010 Nov 23.

PMID:
20854169
26.

Mobile learning for HIV/AIDS healthcare worker training in resource-limited settings.

Zolfo M, Iglesias D, Kiyan C, Echevarria J, Fucay L, Llacsahuanga E, de Waard I, Suàrez V, Llaque WC, Lynen L.

AIDS Res Ther. 2010 Sep 8;7:35. doi: 10.1186/1742-6405-7-35.

27.

Time for "test and treat" in prevention of mother-to-child transmission programs in low- and middle-income countries.

Zolfo M, De Weggheleire A, Schouten E, Lynen L.

J Acquir Immune Defic Syndr. 2010 Nov;55(3):287-9. doi: 10.1097/QAI.0b013e3181eef3da.

PMID:
20714271
28.

Rational use of antiretroviral therapy in low-income and middle-income countries: optimizing regimen sequencing and switching.

Elliott JH, Lynen L, Calmy A, De Luca A, Shafer RW, Zolfo M, Clotet B, Huffam S, Boucher CA, Cooper DA, Schapiro JM.

AIDS. 2008 Oct 18;22(16):2053-67. doi: 10.1097/QAD.0b013e328309520d. Review. No abstract available.

PMID:
18753937
29.

Immune reconstitution inflammatory syndrome in an HIV/TB co-infected patient four years after starting antiretroviral therapy.

Huyst V, Lynen L, Bottieau E, Zolfo M, Kestens L, Colebunders R.

Acta Clin Belg. 2007 Mar-Apr;62(2):126-9.

PMID:
17547295
30.

Remote consultations and HIV/AIDS continuing education in low-resource settings.

Zolfo M, Lynen L, Dierckx J, Colebunders R.

Int J Med Inform. 2006 Sep;75(9):633-7. Epub 2006 May 2.

PMID:
16647877
31.
32.

Telemedicine for HIV/AIDS Care in Low Resource Settings.

Zolfo M, Arnould L, Huyst V, Lynen L.

Stud Health Technol Inform. 2005;114:18-22.

PMID:
15923756
33.

Management of Kaposi's sarcoma in resource-limited settings in the era of HAART.

Lynen L, Zolfo M, Huyst V, Louis F, Barnardt P, Van de Velde A, De Schacht C, Colebunders R.

AIDS Rev. 2005 Jan-Mar;7(1):13-21. Review.

PMID:
15875657
34.

Disseminated nocardiosis presenting with cardiac tamponade in an HIV patient.

Leang B, Lynen L, Lim K, Jacques G, Van Esbroeck M, Zolfo M.

Int J STD AIDS. 2004 Dec;15(12):839-40.

PMID:
15601492
35.

Mutations in dihydropteroate synthase gene of Pneumocystis carinii in HIV patients with Pneumocystis carinii pneumonia.

Visconti E, Ortona E, Mencarini P, Margutti P, Marinaci S, Zolfo M, Siracusano A, Tamburrini E.

Int J Antimicrob Agents. 2001 Dec;18(6):547-51.

PMID:
11738342
36.

Very low frequence of Pneumocystis carinii DNA detection by PCR in specimens from patients with lung damage.

Visconti E, Marinaci S, Zolfo M, Mencarini P, Tamburrini E, Pagliari G, Ortona E, Siracusano A.

J Clin Microbiol. 2000 Mar;38(3):1307-8. No abstract available.

37.

Pneumocystis carinii infection in young non-immunosuppressed rabbits. Kinetics of infection and of the primary specific immune response.

Tamburrini E, Ortona E, Visconti E, Mencarini P, Margutti P, Zolfo M, Barca S, Peters SE, Wakefield AE, Siracusano A.

Med Microbiol Immunol. 1999 Aug;188(1):1-7.

PMID:
10691087
38.

Noninvasive diagnosis of P. carinii pneumonia on oral washes in an HIV-infected child.

Martino AM, Visconti E, Zolfo M, Genovese O, Rendeli C, Mencarini P, Tamburrini E.

Pediatr Pulmonol. 1999 Nov;28(5):352-5. No abstract available.

PMID:
10536066
39.

Successful treatment of PCP episodes caused by Pneumocystis carinii with mutant dihydropteroate (DHPS) gene.

Visconti E, Ortona E, Margutti P, Marinaci S, Zolfo M, Celentano LP, Mencarini P, Siracusano A, Tamburrini E.

J Eukaryot Microbiol. 1999 Sep-Oct;46(5):135S. No abstract available.

PMID:
10519288
40.

Identification of dihydropteroate (DHPS) gene mutant in Pneumocystis carinii in respiratory samples of HIV+ patients from 1992 to 1997.

Visconti E, Ortona E, Margutti P, Marinaci S, Zolfo M, Mencarini P, Celentano LP, Siracusano A, Tamburrini E.

J Eukaryot Microbiol. 1999 Sep-Oct;46(5):132S. No abstract available.

PMID:
10519286
41.

Typing with internal transcribed spacer regions of Pneumocystis carinii from AIDS patients with recurrent pneumonia.

Margutti P, Visconti E, Mencarini P, Zolfo M, Marinaci S, Tamburrini E, Siracusano A, Ortona E.

Res Microbiol. 1998 Sep;149(8):595-9. No abstract available.

PMID:
9795997
42.

Potential impact of Pneumocystis genetic diversity on the molecular detection of the parasite in human host.

Tamburrini E, Mencarini P, Visconti E, Zolfo M, Marinaci S, Zinzi D, Margutti P, Ortona E, Siracusano A.

FEMS Immunol Med Microbiol. 1998 Sep;22(1-2):37-49.

43.

Typing with ITS regions of P.carinii from AIDS patients with recurrent pneumonia.

Margutti P, Visconti E, Mencarini P, Zolfo M, Marinaci S, Tamburrini E, Siracusano A, Ortona E.

J Eukaryot Microbiol. 1997 Nov-Dec;44(6):50S.

PMID:
9508436
44.

Cellular and humoral response in Pneumocystis carinii spontaneously infected rabbits.

Ortona E, Visconti E, Barca S, Margutti P, Mencarini P, Zolfo M, Tamburrini E, Siracusano A.

J Eukaryot Microbiol. 1997 Nov-Dec;44(6):49S. No abstract available.

PMID:
9508434
45.

Detection of Pneumocystis carinii in oropharyngeal washings by PCR-SHELA and nested PCR.

Tamburrini E, Ortona E, Visconti E, Margutti P, Mencarini P, Zolfo M, Marinaci S, Siracusano A.

J Eukaryot Microbiol. 1997 Nov-Dec;44(6):48S.

PMID:
9508433
46.

Detection of Pneumocystis carinii in respiratory specimens by PCR-solution hybridization enzyme-linked immunoassay.

Ortona E, Margutti P, Tamburrini E, Mencarini P, Visconti E, Zolfo M, Siracusano A.

J Clin Microbiol. 1997 Jun;35(6):1589-91.

47.

Comparison of two PCR methods for detection of Pneumocystis carinii in bronchoalveolar lavage fluid.

Tamburrini E, Mencarini P, Visconti E, Zolfo M, De Luca A, Siracusano A, Ortona E, Margutti P, Wakefield AE.

J Eukaryot Microbiol. 1996 Sep-Oct;43(5):20S. No abstract available.

PMID:
8822825
48.

Detection of Pneumocystis carinii DNA in HIV patients with P. carinii pneumonia (PCP) and in animal models.

Tamburrini E, Mencarini P, Visconti E, Zolfo M, De Luca A, Siracusano A, Ortona E, Margutti P, Wakefield AE, Peters SE, Denis CM, Dei-Cas E.

J Eukaryot Microbiol. 1996 Sep-Oct;43(5):18S-19S. No abstract available.

PMID:
8822824
49.

Imbalance between Pneumocystis carinii cysts and trophozoites in bronchoalveolar lavage fluid from patients with pneumocystosis receiving prophylaxis.

Tamburrini E, Mencarini P, Visconti E, De Luca A, Zolfo M, Siracusano A, Ortona E, Murri R, Antinori A.

J Med Microbiol. 1996 Aug;45(2):146-8.

PMID:
8683551
50.

Detection of Pneumocystis carinii DNA in blood by PCR is not of value for diagnosis of P. carinii pneumonia.

Tamburrini E, Mencarini P, Visconti E, Zolfo M, De Luca A, Siracusano A, Ortona E, Wakefield AE.

J Clin Microbiol. 1996 Jun;34(6):1586-8.

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