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The Inflammasome Adaptor ASC Intrinsically Limits CD4+ T-Cell Proliferation to Help Maintain Intestinal Homeostasis.

Javanmard Khameneh H, Leong KWK, Mencarelli A, Vacca M, Mambwe B, Neo K, Tay A, Zolezzi F, Lee B, Mortellaro A.

Front Immunol. 2019 Jul 15;10:1566. doi: 10.3389/fimmu.2019.01566. eCollection 2019.


A Subset of Type I Conventional Dendritic Cells Controls Cutaneous Bacterial Infections through VEGFα-Mediated Recruitment of Neutrophils.

Janela B, Patel AA, Lau MC, Goh CC, Msallam R, Kong WT, Fehlings M, Hubert S, Lum J, Simoni Y, Malleret B, Zolezzi F, Chen J, Poidinger M, Satpathy AT, Briseno C, Wohn C, Malissen B, Murphy KM, Maini AA, Vanhoutte L, Guilliams M, Vial E, Hennequin L, Newell E, Ng LG, Musette P, Yona S, Hacini-Rachinel F, Ginhoux F.

Immunity. 2019 Apr 16;50(4):1069-1083.e8. doi: 10.1016/j.immuni.2019.03.001. Epub 2019 Mar 27.


Organ-Specific Fate, Recruitment, and Refilling Dynamics of Tissue-Resident Macrophages during Blood-Stage Malaria.

Lai SM, Sheng J, Gupta P, Renia L, Duan K, Zolezzi F, Karjalainen K, Newell EW, Ruedl C.

Cell Rep. 2018 Dec 11;25(11):3099-3109.e3. doi: 10.1016/j.celrep.2018.11.059.


Experimental evolution of a fungal pathogen into a gut symbiont.

Tso GHW, Reales-Calderon JA, Tan ASM, Sem X, Le GTT, Tan TG, Lai GC, Srinivasan KG, Yurieva M, Liao W, Poidinger M, Zolezzi F, Rancati G, Pavelka N.

Science. 2018 Nov 2;362(6414):589-595. doi: 10.1126/science.aat0537.


Photodynamic therapy corrects abnormal cancer-associated gene expression observed in actinic keratosis lesions and induces a remodeling effect in photodamaged skin.

Joly F, Deret S, Gamboa B, Menigot C, Fogel P, Mounier C, Reiniche P, Sidou F, Aubert J, Lear J, Fryer AA, Zolezzi F, Voegel JJ.

J Dermatol Sci. 2018 May 17. pii: S0923-1811(17)30775-2. doi: 10.1016/j.jdermsci.2018.05.002. [Epub ahead of print]


Calcineurin B in CD4+ T Cells Prevents Autoimmune Colitis by Negatively Regulating the JAK/STAT Pathway.

Mencarelli A, Vacca M, Khameneh HJ, Acerbi E, Tay A, Zolezzi F, Poidinger M, Mortellaro A.

Front Immunol. 2018 Feb 19;9:261. doi: 10.3389/fimmu.2018.00261. eCollection 2018.


Publisher Correction: IgG1 memory B cells keep the memory of IgE responses.

He JS, Subramaniam S, Narang V, Srinivasan K, Saunders SP, Carbajo D, Wen-Shan T, Hidayah Hamadee N, Lum J, Lee A, Chen J, Poidinger M, Zolezzi F, Lafaille JJ, Curotto de Lafaille MA.

Nat Commun. 2018 Mar 1;9(1):968. doi: 10.1038/s41467-018-03364-z.


The tumour microenvironment creates a niche for the self-renewal of tumour-promoting macrophages in colon adenoma.

Soncin I, Sheng J, Chen Q, Foo S, Duan K, Lum J, Poidinger M, Zolezzi F, Karjalainen K, Ruedl C.

Nat Commun. 2018 Feb 8;9(1):582. doi: 10.1038/s41467-018-02834-8.


Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities.

Cottier F, Srinivasan KG, Yurieva M, Liao W, Poidinger M, Zolezzi F, Pavelka N.

NPJ Biofilms Microbiomes. 2018 Jan 18;4:2. doi: 10.1038/s41522-017-0046-x. eCollection 2018.


NLRP10 Enhances CD4+ T-Cell-Mediated IFNγ Response via Regulation of Dendritic Cell-Derived IL-12 Release.

Vacca M, Böhme J, Zambetti LP, Khameneh HJ, Paleja BS, Laudisi F, Ho AWS, Neo K, Leong KWK, Marzuki M, Lee B, Poidinger M, Santambrogio L, Tsenova L, Zolezzi F, De Libero G, Singhal A, Mortellaro A.

Front Immunol. 2017 Nov 2;8:1462. doi: 10.3389/fimmu.2017.01462. eCollection 2017.


IgG1 memory B cells keep the memory of IgE responses.

He JS, Subramaniam S, Narang V, Srinivasan K, Saunders SP, Carbajo D, Wen-Shan T, Hidayah Hamadee N, Lum J, Lee A, Chen J, Poidinger M, Zolezzi F, Lafaille JJ, Curotto de Lafaille MA.

Nat Commun. 2017 Sep 21;8(1):641. doi: 10.1038/s41467-017-00723-0. Erratum in: Nat Commun. 2018 Mar 1;9(1):968.


The Transcriptional Response of Candida albicans to Weak Organic Acids, Carbon Source, and MIG1 Inactivation Unveils a Role for HGT16 in Mediating the Fungistatic Effect of Acetic Acid.

Cottier F, Tan ASM, Yurieva M, Liao W, Lum J, Poidinger M, Zolezzi F, Pavelka N.

G3 (Bethesda). 2017 Nov 6;7(11):3597-3604. doi: 10.1534/g3.117.300238.


Host sirtuin 1 regulates mycobacterial immunopathogenesis and represents a therapeutic target against tuberculosis.

Cheng CY, Gutierrez NM, Marzuki MB, Lu X, Foreman TW, Paleja B, Lee B, Balachander A, Chen J, Tsenova L, Kurepina N, Teng KWW, West K, Mehra S, Zolezzi F, Poidinger M, Kreiswirth B, Kaushal D, Kornfeld H, Newell EW, Singhal A.

Sci Immunol. 2017 Mar;2(9). pii: eaaj1789. doi: 10.1126/sciimmunol.aaj1789. Epub 2017 Mar 24.


Correction: Functionally diverse human T cells recognize non-microbial antigens presented by MR1.

Lepore M, Kalinichenko A, Calogero S, Kumar P, Paleja B, Schmaler M, Narang V, Zolezzi F, Poidinger M, Mori L, De Libero G.

Elife. 2017 Jun 20;6. pii: e29743. doi: 10.7554/eLife.29743. No abstract available.


Functionally diverse human T cells recognize non-microbial antigens presented by MR1.

Lepore M, Kalinichenko A, Calogero S, Kumar P, Paleja B, Schmaler M, Narang V, Zolezzi F, Poidinger M, Mori L, De Libero G.

Elife. 2017 May 18;6. pii: e24476. doi: 10.7554/eLife.24476. Erratum in: Elife. 2017 Jun 20;6:.


Mapping the human DC lineage through the integration of high-dimensional techniques.

See P, Dutertre CA, Chen J, Günther P, McGovern N, Irac SE, Gunawan M, Beyer M, Händler K, Duan K, Sumatoh HRB, Ruffin N, Jouve M, Gea-Mallorquí E, Hennekam RCM, Lim T, Yip CC, Wen M, Malleret B, Low I, Shadan NB, Fen CFS, Tay A, Lum J, Zolezzi F, Larbi A, Poidinger M, Chan JKY, Chen Q, Rénia L, Haniffa M, Benaroch P, Schlitzer A, Schultze JL, Newell EW, Ginhoux F.

Science. 2017 Jun 9;356(6342). pii: eaag3009. doi: 10.1126/science.aag3009. Epub 2017 May 4.


A functional SNP associated with atopic dermatitis controls cell type-specific methylation of the VSTM1 gene locus.

Kumar D, Puan KJ, Andiappan AK, Lee B, Westerlaken GH, Haase D, Melchiotti R, Li Z, Yusof N, Lum J, Koh G, Foo S, Yeong J, Alves AC, Pekkanen J, Sun LD, Irwanto A, Fairfax BP, Naranbhai V, Common JE, Tang M, Chuang CK, Jarvelin MR, Knight JC, Zhang X, Chew FT, Prabhakar S, Jianjun L, Wang Y, Zolezzi F, Poidinger M, Lane EB, Meyaard L, Rötzschke O.

Genome Med. 2017 Feb 20;9(1):18. doi: 10.1186/s13073-017-0404-6.


β-glucan Exposure on the Fungal Cell Wall Tightly Correlates with Competitive Fitness of Candida Species in the Mouse Gastrointestinal Tract.

Sem X, Le GT, Tan AS, Tso G, Yurieva M, Liao WW, Lum J, Srinivasan KG, Poidinger M, Zolezzi F, Pavelka N.

Front Cell Infect Microbiol. 2016 Dec 22;6:186. doi: 10.3389/fcimb.2016.00186. eCollection 2016.


Plasmablasts During Acute Dengue Infection Represent a Small Subset of a Broader Virus-specific Memory B Cell Pool.

Appanna R, Kg S, Xu MH, Toh YX, Velumani S, Carbajo D, Lee CY, Zuest R, Balakrishnan T, Xu W, Lee B, Poidinger M, Zolezzi F, Leo YS, Thein TL, Wang CI, Fink K.

EBioMedicine. 2016 Oct;12:178-188. doi: 10.1016/j.ebiom.2016.09.003. Epub 2016 Sep 7.


Corrigendum: A subpopulation of high IL-21-producing CD4+ T cells in Peyer's Patches is induced by the microbiota and regulates germinal centers.

Jones L, Ho WQ, Ying S, Ramakrishna L, Srinivasan KG, Yurieva M, Ng WP, Subramaniam S, Hamadee NH, Joseph S, Dolpady J, Atarashi K, Honda K, Zolezzi F, Poidinger M, Lafaille JJ, Curotto de Lafaille MA.

Sci Rep. 2016 Oct 10;6:34899. doi: 10.1038/srep34899. No abstract available.


A subpopulation of high IL-21-producing CD4(+) T cells in Peyer's Patches is induced by the microbiota and regulates germinal centers.

Jones L, Ho WQ, Ying S, Ramakrishna L, Srinivasan KG, Yurieva M, Ng WP, Subramaniam S, Hamadee NH, Joseph S, Dolpady J, Atarashi K, Honda K, Zolezzi F, Poidinger M, Lafaille JJ, Curotto de Lafaille MA.

Sci Rep. 2016 Aug 8;6:30784. doi: 10.1038/srep30784. Erratum in: Sci Rep. 2016 Oct 10;6:34899.


Complete human CD1a deficiency on Langerhans cells due to a rare point mutation in the coding sequence.

Cerny D, Thi Le DH, The TD, Zuest R, Kg S, Velumani S, Khor CC, Mori L, Simmons CP, Poidinger M, Zolezzi F, Ginhoux F, Haniffa M, Wills B, Fink K.

J Allergy Clin Immunol. 2016 Dec;138(6):1709-1712.e11. doi: 10.1016/j.jaci.2016.05.028. Epub 2016 Jun 29. No abstract available.


A novel infection- and inflammation-associated molecular signature in peripheral blood of myasthenia gravis patients.

Barzago C, Lum J, Cavalcante P, Srinivasan KG, Faggiani E, Camera G, Bonanno S, Andreetta F, Antozzi C, Baggi F, Calogero RA, Bernasconi P, Mantegazza R, Mori L, Zolezzi F.

Immunobiology. 2016 Nov;221(11):1227-36. doi: 10.1016/j.imbio.2016.06.012. Epub 2016 Jun 15.


Impaired calcineurin signaling in myeloid cells results in downregulation of pentraxin-3 and increased susceptibility to aspergillosis.

Zelante T, Wong AY, Mencarelli A, Foo S, Zolezzi F, Lee B, Poidinger M, Ricciardi-Castagnoli P, Fric J.

Mucosal Immunol. 2017 Mar;10(2):470-480. doi: 10.1038/mi.2016.52. Epub 2016 Jun 15.


Systematic characterization of basophil anergy.

Puan KJ, Andiappan AK, Lee B, Kumar D, Lai TS, Yeo G, Bercin D, Starke M, Haase D, Lum J, Chew FT, Connolly J, Wong SC, Zolezzi F, Poidinger M, Wang Y, Rötzschke O.

Allergy. 2017 Mar;72(3):373-384. doi: 10.1111/all.12952. Epub 2016 Aug 8.


Neutrophils Self-Regulate Immune Complex-Mediated Cutaneous Inflammation through CXCL2.

Li JL, Lim CH, Tay FW, Goh CC, Devi S, Malleret B, Lee B, Bakocevic N, Chong SZ, Evrard M, Tanizaki H, Lim HY, Russell B, Renia L, Zolezzi F, Poidinger M, Angeli V, St John AL, Harris JE, Tey HL, Tan SM, Kabashima K, Weninger W, Larbi A, Ng LG.

J Invest Dermatol. 2016 Feb;136(2):416-424. doi: 10.1038/JID.2015.410.


Gene Essentiality Is a Quantitative Property Linked to Cellular Evolvability.

Liu G, Yong MY, Yurieva M, Srinivasan KG, Liu J, Lim JS, Poidinger M, Wright GD, Zolezzi F, Choi H, Pavelka N, Rancati G.

Cell. 2015 Dec 3;163(6):1388-99. doi: 10.1016/j.cell.2015.10.069. Epub 2015 Nov 25.


Functional variants of 17q12-21 are associated with allergic asthma but not allergic rhinitis.

Andiappan AK, Sio YY, Lee B, Suri BK, Matta SA, Lum J, Foo S, Koh G, Liu J, Zolezzi F, Poidinger M, Wang de Y, Rotzschke O, Chew FT.

J Allergy Clin Immunol. 2016 Mar;137(3):758-66.e3. doi: 10.1016/j.jaci.2015.08.038. Epub 2015 Oct 23.


CD103(+) Dendritic Cells Control Th17 Cell Function in the Lung.

Zelante T, Wong AY, Ping TJ, Chen J, Sumatoh HR, Viganò E, Hong Bing Y, Lee B, Zolezzi F, Fric J, Newell EW, Mortellaro A, Poidinger M, Puccetti P, Ricciardi-Castagnoli P.

Cell Rep. 2015 Sep 22;12(11):1789-801. doi: 10.1016/j.celrep.2015.08.030. Epub 2015 Sep 10.


Genome-wide analysis of the genetic regulation of gene expression in human neutrophils.

Andiappan AK, Melchiotti R, Poh TY, Nah M, Puan KJ, Vigano E, Haase D, Yusof N, San Luis B, Lum J, Kumar D, Foo S, Zhuang L, Vasudev A, Irwanto A, Lee B, Nardin A, Liu H, Zhang F, Connolly J, Liu J, Mortellaro A, Wang Y, Poidinger M, Larbi A, Zolezzi F, Rotzschke O.

Nat Commun. 2015 Aug 10;6:7971. doi: 10.1038/ncomms8971.


Intestinal CD103(+)CD11b(-) dendritic cells restrain colitis via IFN-γ-induced anti-inflammatory response in epithelial cells.

Muzaki AR, Tetlak P, Sheng J, Loh SC, Setiagani YA, Poidinger M, Zolezzi F, Karjalainen K, Ruedl C.

Mucosal Immunol. 2016 Mar;9(2):336-51. doi: 10.1038/mi.2015.64. Epub 2015 Jul 15.


Identification of cDC1- and cDC2-committed DC progenitors reveals early lineage priming at the common DC progenitor stage in the bone marrow.

Schlitzer A, Sivakamasundari V, Chen J, Sumatoh HR, Schreuder J, Lum J, Malleret B, Zhang S, Larbi A, Zolezzi F, Renia L, Poidinger M, Naik S, Newell EW, Robson P, Ginhoux F.

Nat Immunol. 2015 Jul;16(7):718-28. doi: 10.1038/ni.3200. Epub 2015 Jun 8.


Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.

Carrara M, Lum J, Cordero F, Beccuti M, Poidinger M, Donatelli S, Calogero RA, Zolezzi F.

BMC Bioinformatics. 2015;16 Suppl 9:S2. doi: 10.1186/1471-2105-16-S9-S2. Epub 2015 Jun 1.


Cell Specific eQTL Analysis without Sorting Cells.

Westra HJ, Arends D, Esko T, Peters MJ, Schurmann C, Schramm K, Kettunen J, Yaghootkar H, Fairfax BP, Andiappan AK, Li Y, Fu J, Karjalainen J, Platteel M, Visschedijk M, Weersma RK, Kasela S, Milani L, Tserel L, Peterson P, Reinmaa E, Hofman A, Uitterlinden AG, Rivadeneira F, Homuth G, Petersmann A, Lorbeer R, Prokisch H, Meitinger T, Herder C, Roden M, Grallert H, Ripatti S, Perola M, Wood AR, Melzer D, Ferrucci L, Singleton AB, Hernandez DG, Knight JC, Melchiotti R, Lee B, Poidinger M, Zolezzi F, Larbi A, Wang de Y, van den Berg LH, Veldink JH, Rotzschke O, Makino S, Salomaa V, Strauch K, Völker U, van Meurs JB, Metspalu A, Wijmenga C, Jansen RC, Franke L.

PLoS Genet. 2015 May 8;11(5):e1005223. doi: 10.1371/journal.pgen.1005223. eCollection 2015 May.


C-Myb(+) erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages.

Hoeffel G, Chen J, Lavin Y, Low D, Almeida FF, See P, Beaudin AE, Lum J, Low I, Forsberg EC, Poidinger M, Zolezzi F, Larbi A, Ng LG, Chan JK, Greter M, Becher B, Samokhvalov IM, Merad M, Ginhoux F.

Immunity. 2015 Apr 21;42(4):665-78. doi: 10.1016/j.immuni.2015.03.011.


MicroRNA expression profiling of human blood monocyte subsets highlights functional differences.

Dang TM, Wong WC, Ong SM, Li P, Lum J, Chen J, Poidinger M, Zolezzi F, Wong SC.

Immunology. 2015 Jul;145(3):404-16. doi: 10.1111/imm.12456.


Dendritic cell derived IL-2 inhibits survival of terminally mature cells via an autocrine signaling pathway.

Balachander A, Nabti S, Sobota RM, Foo S, Zolezzi F, Lee BT, Poidinger M, Ricciardi-Castagnoli P.

Eur J Immunol. 2015 May;45(5):1494-9. doi: 10.1002/eji.201445050. Epub 2015 Mar 18.


The transcriptional stress response of Candida albicans to weak organic acids.

Cottier F, Tan AS, Chen J, Lum J, Zolezzi F, Poidinger M, Pavelka N.

G3 (Bethesda). 2015 Jan 29;5(4):497-505. doi: 10.1534/g3.114.015941.


Quantifying entire transcriptomes by aligned RNA-seq data.

Calogero RA, Zolezzi F.

Methods Mol Biol. 2015;1269:163-72. doi: 10.1007/978-1-4939-2291-8_10.


NFATc2 mediates epigenetic modification of dendritic cell cytokine and chemokine responses to dectin-1 stimulation.

Yu HB, Yurieva M, Balachander A, Foo I, Leong X, Zelante T, Zolezzi F, Poidinger M, Ricciardi-Castagnoli P.

Nucleic Acids Res. 2015 Jan;43(2):836-47. doi: 10.1093/nar/gku1369. Epub 2014 Dec 30.


Molecular profiling reveals a tumor-promoting phenotype of monocytes and macrophages in human cancer progression.

Chittezhath M, Dhillon MK, Lim JY, Laoui D, Shalova IN, Teo YL, Chen J, Kamaraj R, Raman L, Lum J, Thamboo TP, Chiong E, Zolezzi F, Yang H, Van Ginderachter JA, Poidinger M, Wong AS, Biswas SK.

Immunity. 2014 Nov 20;41(5):815-29. doi: 10.1016/j.immuni.2014.09.014. Epub 2014 Oct 30.


Metformin as adjunct antituberculosis therapy.

Singhal A, Jie L, Kumar P, Hong GS, Leow MK, Paleja B, Tsenova L, Kurepina N, Chen J, Zolezzi F, Kreiswirth B, Poidinger M, Chee C, Kaplan G, Wang YT, De Libero G.

Sci Transl Med. 2014 Nov 19;6(263):263ra159. doi: 10.1126/scitranslmed.3009885.


Calcium and calcineurin-NFAT signaling regulate granulocyte-monocyte progenitor cell cycle via Flt3-L.

Fric J, Lim CX, Mertes A, Lee BT, Viganò E, Chen J, Zolezzi F, Poidinger M, Larbi A, Strobl H, Zelante T, Ricciardi-Castagnoli P.

Stem Cells. 2014 Dec;32(12):3232-44. doi: 10.1002/stem.1813.


Human regulatory B cells combine phenotypic and genetic hallmarks with a distinct differentiation fate.

Lin W, Cerny D, Chua E, Duan K, Yi JT, Shadan NB, Lum J, Maho-Vaillant M, Zolezzi F, Wong SC, Larbi A, Fink K, Musette P, Poidinger M, Calbo S.

J Immunol. 2014 Sep 1;193(5):2258-66. doi: 10.4049/jimmunol.1303214. Epub 2014 Jul 30.


Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRβ repertoire.

Lepore M, Kalinichenko A, Colone A, Paleja B, Singhal A, Tschumi A, Lee B, Poidinger M, Zolezzi F, Quagliata L, Sander P, Newell E, Bertoletti A, Terracciano L, De Libero G, Mori L.

Nat Commun. 2014 May 15;5:3866. doi: 10.1038/ncomms4866. Erratum in: Nat Commun. 2014;5:4493. Kalinicenko, Artem [corrected to Kalinichenko, Artem].


Rational design of a live attenuated dengue vaccine: 2'-o-methyltransferase mutants are highly attenuated and immunogenic in mice and macaques.

Züst R, Dong H, Li XF, Chang DC, Zhang B, Balakrishnan T, Toh YX, Jiang T, Li SH, Deng YQ, Ellis BR, Ellis EM, Poidinger M, Zolezzi F, Qin CF, Shi PY, Fink K.

PLoS Pathog. 2013;9(8):e1003521. doi: 10.1371/journal.ppat.1003521. Epub 2013 Aug 1. Erratum in: PLoS Pathog. 2013;9(9). doi:10.1371/annotation/4d0a4eb9-24be-4d26-bef0-c6cdc8824c69.


Tolerogenic dendritic cells that inhibit autoimmune arthritis can be induced by a combination of carvacrol and thermal stress.

Spiering R, van der Zee R, Wagenaar J, Kapetis D, Zolezzi F, van Eden W, Broere F.

PLoS One. 2012;7(9):e46336. doi: 10.1371/journal.pone.0046336. Epub 2012 Sep 25.


AMDA 2.13: A major update for automated cross-platform microarray data analysis.

Kapetis D, Clarelli F, Vitulli F, de Rosbo NK, Beretta O, Foti M, Ricciardi-Castagnoli P, Zolezzi F.

Biotechniques. 2012 Jul;53(1):33-40. doi: 10.2144/0000113889.


Migratory, and not lymphoid-resident, dendritic cells maintain peripheral self-tolerance and prevent autoimmunity via induction of iTreg cells.

Vitali C, Mingozzi F, Broggi A, Barresi S, Zolezzi F, Bayry J, Raimondi G, Zanoni I, Granucci F.

Blood. 2012 Aug 9;120(6):1237-45. doi: 10.1182/blood-2011-09-379776. Epub 2012 Jul 3.


Gene expression profiling and qRT-PCR expression of RRP1B, PCNT, KIF21A and ADRB2 in leucocytes of Down's syndrome subjects.

Salemi M, Barone C, Romano C, Zolezzi F, Romano C, Scavuzzo C, Salluzzo R, Scillato F, Signorelli M, Kapetis D, Salluzzo MG, Bosco P.

J Genet. 2012 Mar 13;91(1):e18-23. No abstract available.

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