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Items: 1 to 50 of 96

1.

Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition.

Bancel E, Bonnot T, Davanture M, Alvarez D, Zivy M, Martre P, Déjean S, Ravel C.

Front Plant Sci. 2019 Jul 4;10:832. doi: 10.3389/fpls.2019.00832. eCollection 2019.

2.

Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome.

Henry C, Haller L, Blein-Nicolas M, Zivy M, Canette A, Verbrugghe M, Mézange C, Boulay M, Gardan R, Samson S, Martin V, André-Leroux G, Monnet V.

Front Microbiol. 2019 Jun 19;10:1329. doi: 10.3389/fmicb.2019.01329. eCollection 2019.

3.

Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in endoplasmic reticulum and peroxisome metabolisms and in lipid composition.

Havé M, Luo J, Tellier F, Balliau T, Cueff G, Chardon F, Zivy M, Rajjou L, Cacas JL, Masclaux-Daubresse C.

New Phytol. 2019 Aug;223(3):1461-1477. doi: 10.1111/nph.15913. Epub 2019 Jun 22.

PMID:
31077612
4.

Modeling Protein Destiny in Developing Fruit.

Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S.

Plant Physiol. 2019 Jul;180(3):1709-1724. doi: 10.1104/pp.19.00086. Epub 2019 Apr 23.

5.

Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm.

Cui J, Davanture M, Zivy M, Lamade E, Tcherkez G.

New Phytol. 2019 Jul;223(1):310-322. doi: 10.1111/nph.15751. Epub 2019 Mar 19.

PMID:
30767245
6.

Peptide filtering differently affects the performances of XIC-based quantification methods.

Belouah I, Blein-Nicolas M, Balliau T, Gibon Y, Zivy M, Colombié S.

J Proteomics. 2019 Feb 20;193:131-141. doi: 10.1016/j.jprot.2018.10.003. Epub 2018 Oct 10.

7.

α-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes.

Bichang'a G, Da Lage JL, Capdevielle-Dulac C, Zivy M, Balliau T, Sambai K, Le Ru B, Kaiser L, Juma G, Maina ENM, Calatayud PA.

J Chem Ecol. 2018 Nov;44(11):1030-1039. doi: 10.1007/s10886-018-1002-9. Epub 2018 Aug 7.

PMID:
30084041
8.

Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia.

Berrabah F, Balliau T, Aït-Salem EH, George J, Zivy M, Ratet P, Gourion B.

New Phytol. 2018 Jul;219(1):310-323. doi: 10.1111/nph.15142. Epub 2018 Apr 18.

9.

Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics.

Balliau T, Blein-Nicolas M, Zivy M.

Proteomes. 2018 Jan 30;6(1). pii: E6. doi: 10.3390/proteomes6010006.

10.

Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?

Havé M, Balliau T, Cottyn-Boitte B, Dérond E, Cueff G, Soulay F, Lornac A, Reichman P, Dissmeyer N, Avice JC, Gallois P, Rajjou L, Zivy M, Masclaux-Daubresse C.

J Exp Bot. 2018 Mar 14;69(6):1369-1385. doi: 10.1093/jxb/erx482.

11.

Proline Hydroxylation in Cell Wall Proteins: Is It Yet Possible to Define Rules?

Duruflé H, Hervé V, Balliau T, Zivy M, Dunand C, Jamet E.

Front Plant Sci. 2017 Oct 17;8:1802. doi: 10.3389/fpls.2017.01802. eCollection 2017.

12.

Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study.

Duruflé H, Hervé V, Ranocha P, Balliau T, Zivy M, Chourré J, San Clemente H, Burlat V, Albenne C, Déjean S, Jamet E, Dunand C.

Plant Sci. 2017 Oct;263:183-193. doi: 10.1016/j.plantsci.2017.07.015. Epub 2017 Jul 20.

PMID:
28818374
13.

A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda.

Villegente M, Marmey P, Job C, Galland M, Cueff G, Godin B, Rajjou L, Balliau T, Zivy M, Fogliani B, Sarramegna-Burtet V, Job D.

Proteomes. 2017 Jul 28;5(3). pii: E19. doi: 10.3390/proteomes5030019.

14.

Mass Spectrometry of Mitochondrial Membrane Protein Complexes.

Negroni L, Zivy M, Lemaire C.

Methods Mol Biol. 2017;1635:233-246. doi: 10.1007/978-1-4939-7151-0_12.

PMID:
28755372
15.

Phosphoproteomic Analysis of Isolated Mitochondria in Yeast.

Renvoisé M, Bonhomme L, Davanture M, Zivy M, Lemaire C.

Methods Mol Biol. 2017;1636:283-299. doi: 10.1007/978-1-4939-7154-1_18.

PMID:
28730486
16.

The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis.

Aloui A, Recorbet G, Lemaître-Guillier C, Mounier A, Balliau T, Zivy M, Wipf D, Dumas-Gaudot E.

Mycorrhiza. 2018 Jan;28(1):1-16. doi: 10.1007/s00572-017-0789-5. Epub 2017 Jul 19.

PMID:
28725961
17.

Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum.

Bonnot T, Bancel E, Alvarez D, Davanture M, Boudet J, Pailloux M, Zivy M, Ravel C, Martre P.

Plant J. 2017 Sep;91(5):894-910. doi: 10.1111/tpj.13615. Epub 2017 Jul 31.

18.

Cell wall proteome analysis of Arabidopsis thaliana mature stems.

Duruflé H, Clemente HS, Balliau T, Zivy M, Dunand C, Jamet E.

Proteomics. 2017 Apr;17(8). doi: 10.1002/pmic.201600449. Epub 2017 Mar 13.

PMID:
28155257
19.

X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification.

Langella O, Valot B, Balliau T, Blein-Nicolas M, Bonhomme L, Zivy M.

J Proteome Res. 2017 Feb 3;16(2):494-503. doi: 10.1021/acs.jproteome.6b00632. Epub 2016 Dec 19.

PMID:
27990826
20.

Concerted Changes in the Phosphoproteome and Metabolome Under Different CO2/O2 Gaseous Conditions in Arabidopsis Rosettes.

Abadie C, Mainguet S, Davanture M, Hodges M, Zivy M, Tcherkez G.

Plant Cell Physiol. 2016 Jul;57(7):1544-1556. Epub 2016 May 11.

PMID:
27903807
21.

The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6.

Dobrenel T, Mancera-Martínez E, Forzani C, Azzopardi M, Davanture M, Moreau M, Schepetilnikov M, Chicher J, Langella O, Zivy M, Robaglia C, Ryabova LA, Hanson J, Meyer C.

Front Plant Sci. 2016 Nov 7;7:1611. eCollection 2016.

22.

An enlarged cell wall proteome of Arabidopsis thaliana rosettes.

Hervé V, Duruflé H, San Clemente H, Albenne C, Balliau T, Zivy M, Dunand C, Jamet E.

Proteomics. 2016 Dec;16(24):3183-3187. doi: 10.1002/pmic.201600290.

PMID:
27775233
23.

Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics.

Blein-Nicolas M, Zivy M.

Biochim Biophys Acta. 2016 Aug;1864(8):883-95. doi: 10.1016/j.bbapap.2016.02.019. Epub 2016 Mar 3. Review.

PMID:
26947242
24.

Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences.

Nguyen-Kim H, San Clemente H, Balliau T, Zivy M, Dunand C, Albenne C, Jamet E.

Proteomics. 2016 Feb;16(3):491-503. doi: 10.1002/pmic.201500129.

PMID:
26572690
25.

The Amborella vacuolar processing enzyme family.

Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, de Kochko A, Sarramegna-Burtet V, Job D.

Front Plant Sci. 2015 Aug 21;6:618. doi: 10.3389/fpls.2015.00618. eCollection 2015.

26.

Proteomic Approach to Identify Nuclear Proteins in Wheat Grain.

Bancel E, Bonnot T, Davanture M, Branlard G, Zivy M, Martre P.

J Proteome Res. 2015 Oct 2;14(10):4432-9. doi: 10.1021/acs.jproteome.5b00446. Epub 2015 Sep 8.

PMID:
26228564
27.

The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping.

Zivy M, Wienkoop S, Renaut J, Pinheiro C, Goulas E, Carpentier S.

Front Plant Sci. 2015 Jul 9;6:448. doi: 10.3389/fpls.2015.00448. eCollection 2015. Review.

28.

A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast.

Blein-Nicolas M, Albertin W, da Silva T, Valot B, Balliau T, Masneuf-Pomarède I, Bely M, Marullo P, Sicard D, Dillmann C, de Vienne D, Zivy M.

Mol Cell Proteomics. 2015 Aug;14(8):2056-71. doi: 10.1074/mcp.M115.048058. Epub 2015 May 13.

29.

An integrated "omics" approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase.

Amiour N, Imbaud S, Clément G, Agier N, Zivy M, Valot B, Balliau T, Quilleré I, Tercé-Laforgue T, Dargel-Graffin C, Hirel B.

BMC Genomics. 2014 Nov 20;15:1005. doi: 10.1186/1471-2164-15-1005.

30.

Omics technologies provide new insights into the molecular physiopathology of equine osteochondrosis.

Desjardin C, Riviere J, Vaiman A, Morgenthaler C, Diribarne M, Zivy M, Robert C, Le Moyec L, Wimel L, Lepage O, Jacques C, Cribiu E, Schibler L.

BMC Genomics. 2014 Oct 31;15:947. doi: 10.1186/1471-2164-15-947.

31.

Photosynthetic activity influences cellulose biosynthesis and phosphorylation of proteins involved therein in Arabidopsis leaves.

Boex-Fontvieille E, Davanture M, Jossier M, Zivy M, Hodges M, Tcherkez G.

J Exp Bot. 2014 Sep;65(17):4997-5010. doi: 10.1093/jxb/eru268. Epub 2014 Jul 19.

PMID:
25039072
32.

The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis.

Abdallah C, Valot B, Guillier C, Mounier A, Balliau T, Zivy M, van Tuinen D, Renaut J, Wipf D, Dumas-Gaudot E, Recorbet G.

J Proteomics. 2014 Aug 28;108:354-68. doi: 10.1016/j.jprot.2014.05.028. Epub 2014 Jun 10.

PMID:
24925269
33.

Phosphoproteome profiles of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea during exponential growth in axenic cultures.

Davanture M, Dumur J, Bataillé-Simoneau N, Campion C, Valot B, Zivy M, Simoneau P, Fillinger S.

Proteomics. 2014 Jul;14(13-14):1639-45. doi: 10.1002/pmic.201300541. Epub 2014 Jun 16.

PMID:
24825570
34.

Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae.

Renvoisé M, Bonhomme L, Davanture M, Valot B, Zivy M, Lemaire C.

J Proteomics. 2014 Jun 25;106:140-50. doi: 10.1016/j.jprot.2014.04.022. Epub 2014 Apr 24.

PMID:
24769239
35.

Phosphorylation pattern of Rubisco activase in Arabidopsis leaves.

Boex-Fontvieille E, Daventure M, Jossier M, Hodges M, Zivy M, Tcherkez G.

Plant Biol (Stuttg). 2014 May;16(3):550-7. doi: 10.1111/plb.12100. Epub 2013 Sep 30.

PMID:
24119201
36.

An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp.

Xu J, Pascual L, Aurand R, Bouchet JP, Valot B, Zivy M, Causse M, Faurobert M.

Proteomics. 2013 Oct;13(20):3059-63. doi: 10.1002/pmic.201200438. Epub 2013 Sep 13.

PMID:
23929585
37.

Photosynthetic control of Arabidopsis leaf cytoplasmic translation initiation by protein phosphorylation.

Boex-Fontvieille E, Daventure M, Jossier M, Zivy M, Hodges M, Tcherkez G.

PLoS One. 2013 Jul 24;8(7):e70692. doi: 10.1371/journal.pone.0070692. Print 2013.

38.

Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers.

Douché T, San Clemente H, Burlat V, Roujol D, Valot B, Zivy M, Pont-Lezica R, Jamet E.

Proteomics. 2013 Aug;13(16):2438-54. doi: 10.1002/pmic.201200507. Epub 2013 Jul 23.

PMID:
23784962
39.

Yeast proteome variations reveal different adaptive responses to grape must fermentation.

Blein-Nicolas M, Albertin W, Valot B, Marullo P, Sicard D, Giraud C, Huet S, Bourgais A, Dillmann C, de Vienne D, Zivy M.

Mol Biol Evol. 2013 Jun;30(6):1368-83. doi: 10.1093/molbev/mst050. Epub 2013 Mar 14.

PMID:
23493259
40.

Management and dissemination of MS proteomic data with PROTICdb: example of a quantitative comparison between methods of protein extraction.

Langella O, Valot B, Jacob D, Balliau T, Flores R, Hoogland C, Joets J, Zivy M.

Proteomics. 2013 May;13(9):1457-66. doi: 10.1002/pmic.201200564. Epub 2013 Apr 5.

PMID:
23468041
41.

The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize.

Amiour N, Imbaud S, Clément G, Agier N, Zivy M, Valot B, Balliau T, Armengaud P, Quilleré I, Cañas R, Tercet-Laforgue T, Hirel B.

J Exp Bot. 2012 Sep;63(14):5017-33. doi: 10.1093/jxb/ers186.

PMID:
22936829
42.

Including shared peptides for estimating protein abundances: a significant improvement for quantitative proteomics.

Blein-Nicolas M, Xu H, de Vienne D, Giraud C, Huet S, Zivy M.

Proteomics. 2012 Sep;12(18):2797-801. doi: 10.1002/pmic.201100660.

PMID:
22833229
43.

Phosphoproteome dynamics upon changes in plant water status reveal early events associated with rapid growth adjustment in maize leaves.

Bonhomme L, Valot B, Tardieu F, Zivy M.

Mol Cell Proteomics. 2012 Oct;11(10):957-72. Epub 2012 Jul 10.

44.

A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage.

Desjardin C, Balliau T, Valot B, Zivy M, Wimel L, Guérin G, Cribiu E, Schibler L.

Proteomics. 2012 Jun;12(11):1870-4. doi: 10.1002/pmic.201100366.

PMID:
22623359
45.

The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions.

Virlouvet L, Jacquemot MP, Gerentes D, Corti H, Bouton S, Gilard F, Valot B, Trouverie J, Tcherkez G, Falque M, Damerval C, Rogowsky P, Perez P, Noctor G, Zivy M, Coursol S.

Plant Physiol. 2011 Oct;157(2):917-36. doi: 10.1104/pp.111.176818. Epub 2011 Aug 18.

46.

Oil body proteins sequentially accumulate throughout seed development in Brassica napus.

Jolivet P, Boulard C, Bellamy A, Valot B, d'Andréa S, Zivy M, Nesi N, Chardot T.

J Plant Physiol. 2011 Nov 15;168(17):2015-20. doi: 10.1016/j.jplph.2011.06.007. Epub 2011 Jul 31.

PMID:
21803444
47.

MassChroQ: a versatile tool for mass spectrometry quantification.

Valot B, Langella O, Nano E, Zivy M.

Proteomics. 2011 Sep;11(17):3572-7. doi: 10.1002/pmic.201100120. Epub 2011 Aug 4.

PMID:
21751374
48.

Plant proteomics.

Job D, Haynes PA, Zivy M.

Proteomics. 2011 May;11(9):1557-8. doi: 10.1002/pmic.201190035. No abstract available.

PMID:
21520414
49.

Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts.

Bienvenut WV, Espagne C, Martinez A, Majeran W, Valot B, Zivy M, Vallon O, Adam Z, Meinnel T, Giglione C.

Proteomics. 2011 May;11(9):1734-50. doi: 10.1002/pmic.201000634. Epub 2011 Apr 4.

PMID:
21462344
50.

Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO).

Agrawal GK, Job D, Zivy M, Agrawal VP, Bradshaw RA, Dunn MJ, Haynes PA, van Wijk KJ, Kikuchi S, Renaut J, Weckwerth W, Rakwal R.

Proteomics. 2011 May;11(9):1559-68. doi: 10.1002/pmic.201000608. Epub 2011 Mar 23.

PMID:
21433283

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