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Items: 16

1.

Interspecies analysis of MYC targets identifies tRNA synthetases as mediators of growth and survival in MYC-overexpressing cells.

Zirin J, Ni X, Sack LM, Yang-Zhou D, Hu Y, Brathwaite R, Bulyk ML, Elledge SJ, Perrimon N.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14614-14619. doi: 10.1073/pnas.1821863116. Epub 2019 Jul 1. Erratum in: Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17128.

PMID:
31262815
2.

Next-generation CRISPR/Cas9 transcriptional activation in Drosophila using flySAM.

Jia Y, Xu RG, Ren X, Ewen-Campen B, Rajakumar R, Zirin J, Yang-Zhou D, Zhu R, Wang F, Mao D, Peng P, Qiao HH, Wang X, Liu LP, Xu B, Ji JY, Liu Q, Sun J, Perrimon N, Ni JQ.

Proc Natl Acad Sci U S A. 2018 May 1;115(18):4719-4724. doi: 10.1073/pnas.1800677115. Epub 2018 Apr 16.

3.

The TORC1-Regulated CPA Complex Rewires an RNA Processing Network to Drive Autophagy and Metabolic Reprogramming.

Tang HW, Hu Y, Chen CL, Xia B, Zirin J, Yuan M, Asara JM, Rabinow L, Perrimon N.

Cell Metab. 2018 May 1;27(5):1040-1054.e8. doi: 10.1016/j.cmet.2018.02.023. Epub 2018 Mar 29.

4.

A gene-specific T2A-GAL4 library for Drosophila.

Lee PT, Zirin J, Kanca O, Lin WW, Schulze KL, Li-Kroeger D, Tao R, Devereaux C, Hu Y, Chung V, Fang Y, He Y, Pan H, Ge M, Zuo Z, Housden BE, Mohr SE, Yamamoto S, Levis RW, Spradling AC, Perrimon N, Bellen HJ.

Elife. 2018 Mar 22;7. pii: e35574. doi: 10.7554/eLife.35574.

5.

Zinc Detoxification: A Functional Genomics and Transcriptomics Analysis in Drosophila melanogaster Cultured Cells.

Mohr SE, Rudd K, Hu Y, Song WR, Gilly Q, Buckner M, Housden BE, Kelley C, Zirin J, Tao R, Amador G, Sierzputowska K, Comjean A, Perrimon N.

G3 (Bethesda). 2018 Feb 2;8(2):631-641. doi: 10.1534/g3.117.300447.

6.

Optimized strategy for in vivo Cas9-activation in Drosophila.

Ewen-Campen B, Yang-Zhou D, Fernandes VR, González DP, Liu LP, Tao R, Ren X, Sun J, Hu Y, Zirin J, Mohr SE, Ni JQ, Perrimon N.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):9409-9414. doi: 10.1073/pnas.1707635114. Epub 2017 Aug 14.

7.

Activin signaling mediates muscle-to-adipose communication in a mitochondria dysfunction-associated obesity model.

Song W, Owusu-Ansah E, Hu Y, Cheng D, Ni X, Zirin J, Perrimon N.

Proc Natl Acad Sci U S A. 2017 Jul 24. pii: 201708037. doi: 10.1073/pnas.1708037114. [Epub ahead of print]

8.

FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2017 update.

Hu Y, Comjean A, Roesel C, Vinayagam A, Flockhart I, Zirin J, Perkins L, Perrimon N, Mohr SE.

Nucleic Acids Res. 2017 Jan 4;45(D1):D672-D678. doi: 10.1093/nar/gkw977. Epub 2016 Oct 23.

9.

Regulators of autophagosome formation in Drosophila muscles.

Zirin J, Nieuwenhuis J, Samsonova A, Tao R, Perrimon N.

PLoS Genet. 2015 Feb 18;11(2):e1005006. doi: 10.1371/journal.pgen.1005006. eCollection 2015 Feb.

10.

Role of autophagy in glycogen breakdown and its relevance to chloroquine myopathy.

Zirin J, Nieuwenhuis J, Perrimon N.

PLoS Biol. 2013 Nov;11(11):e1001708. doi: 10.1371/journal.pbio.1001708. Epub 2013 Nov 12.

11.

Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Vinayagam A, Zirin J, Roesel C, Hu Y, Yilmazel B, Samsonova AA, Neumüller RA, Mohr SE, Perrimon N.

Nat Methods. 2014 Jan;11(1):94-9. doi: 10.1038/nmeth.2733. Epub 2013 Nov 17.

12.

Ecdysone signaling at metamorphosis triggers apoptosis of Drosophila abdominal muscles.

Zirin J, Cheng D, Dhanyasi N, Cho J, Dura JM, Vijayraghavan K, Perrimon N.

Dev Biol. 2013 Nov 15;383(2):275-84. doi: 10.1016/j.ydbio.2013.08.029. Epub 2013 Sep 17.

13.

Primary cell cultures from Drosophila gastrula embryos.

Perrimon N, Zirin J, Bai J.

J Vis Exp. 2011 Feb 28;(48). pii: 2215. doi: 10.3791/2215.

14.

Drosophila as a model system to study autophagy.

Zirin J, Perrimon N.

Semin Immunopathol. 2010 Dec;32(4):363-72. doi: 10.1007/s00281-010-0223-y. Epub 2010 Aug 27. Review.

15.

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