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Items: 44

1.

Synthesis, antimicrobial activity and conformational analysis of the class IIa bacteriocin pediocin PA-1 and analogs thereof.

Bédard F, Hammami R, Zirah S, Rebuffat S, Fliss I, Biron E.

Sci Rep. 2018 Jun 13;8(1):9029. doi: 10.1038/s41598-018-27225-3.

2.

An orthogonal system for heterologous expression of actinobacterial lasso peptides in Streptomyces hosts.

Mevaere J, Goulard C, Schneider O, Sekurova ON, Ma H, Zirah S, Afonso C, Rebuffat S, Zotchev SB, Li Y.

Sci Rep. 2018 May 29;8(1):8232. doi: 10.1038/s41598-018-26620-0.

3.

Structural Basis for Natural Product Selection and Export by Bacterial ABC Transporters.

Romano M, Fusco G, Choudhury HG, Mehmood S, Robinson CV, Zirah S, Hegemann JD, Lescop E, Marahiel MA, Rebuffat S, De Simone A, Beis K.

ACS Chem Biol. 2018 Jun 15;13(6):1598-1609. doi: 10.1021/acschembio.8b00226. Epub 2018 May 18.

PMID:
29757605
4.

Metal ions induced secondary structure rearrangements: mechanically interlocked lasso vs. unthreaded branched-cyclic topoisomers.

Jeanne Dit Fouque K, Moreno J, Hegemann JD, Zirah S, Rebuffat S, Fernandez-Lima F.

Analyst. 2018 May 15;143(10):2323-2333. doi: 10.1039/c8an00138c.

PMID:
29721555
5.

Identification of Lasso Peptide Topologies Using Native Nanoelectrospray Ionization-Trapped Ion Mobility Spectrometry-Mass Spectrometry.

Dit Fouque KJ, Moreno J, Hegemann JD, Zirah S, Rebuffat S, Fernandez-Lima F.

Anal Chem. 2018 Apr 17;90(8):5139-5146. doi: 10.1021/acs.analchem.7b05230. Epub 2018 Apr 3.

PMID:
29579382
6.

β,γ-diamino acids as building blocks for new analogues of Gramicidin S: Synthesis and biological activity.

Wan Y, Stanovych A, Gori D, Zirah S, Kouklovsky C, Alezra V.

Eur J Med Chem. 2018 Apr 10;149:122-128. doi: 10.1016/j.ejmech.2018.02.053. Epub 2018 Feb 21.

PMID:
29499484
7.

General rules of fragmentation evidencing lasso structures in CID and ETD.

Jeanne Dit Fouque K, Lavanant H, Zirah S, Hegemann JD, Fage CD, Marahiel MA, Rebuffat S, Afonso C.

Analyst. 2018 Feb 26;143(5):1157-1170. doi: 10.1039/c7an02052j.

PMID:
29404537
8.

Structural basis for antibacterial peptide self-immunity by the bacterial ABC transporter McjD.

Bountra K, Hagelueken G, Choudhury HG, Corradi V, El Omari K, Wagner A, Mathavan I, Zirah S, Yuan Wahlgren W, Tieleman DP, Schiemann O, Rebuffat S, Beis K.

EMBO J. 2017 Oct 16;36(20):3062-3079. doi: 10.15252/embj.201797278. Epub 2017 Sep 1.

9.

Radiocarbon dating minute amounts of bone (3-60 mg) with ECHoMICADAS.

Cersoy S, Zazzo A, Rofes J, Tresset A, Zirah S, Gauthier C, Kaltnecker E, Thil F, Tisnerat-Laborde N.

Sci Rep. 2017 Aug 2;7(1):7141. doi: 10.1038/s41598-017-07645-3.

10.

Furanoterpene Diversity and Variability in the Marine Sponge Spongia officinalis, from Untargeted LC-MS/MS Metabolomic Profiling to Furanolactam Derivatives.

Bauvais C, Bonneau N, Blond A, Pérez T, Bourguet-Kondracki ML, Zirah S.

Metabolites. 2017 Jun 13;7(2). pii: E27. doi: 10.3390/metabo7020027.

11.

Signatures of Mechanically Interlocked Topology of Lasso Peptides by Ion Mobility-Mass Spectrometry: Lessons from a Collection of Representatives.

Fouque KJD, Lavanant H, Zirah S, Hegemann JD, Zimmermann M, Marahiel MA, Rebuffat S, Afonso C.

J Am Soc Mass Spectrom. 2017 Feb;28(2):315-322. doi: 10.1007/s13361-016-1524-8. Epub 2016 Nov 3.

PMID:
27812920
12.

Deconjugated Bile Salts Produced by Extracellular Bile-Salt Hydrolase-Like Activities from the Probiotic Lactobacillus johnsonii La1 Inhibit Giardia duodenalis In vitro Growth.

Travers MA, Sow C, Zirah S, Deregnaucourt C, Chaouch S, Queiroz RM, Charneau S, Allain T, Florent I, Grellier P.

Front Microbiol. 2016 Sep 27;7:1453. eCollection 2016.

13.

Structural and Functional Basis for Lipid Synergy on the Activity of the Antibacterial Peptide ABC Transporter McjD.

Mehmood S, Corradi V, Choudhury HG, Hussain R, Becker P, Axford D, Zirah S, Rebuffat S, Tieleman DP, Robinson CV, Beis K.

J Biol Chem. 2016 Oct 7;291(41):21656-21668. Epub 2016 Aug 23.

14.

Initial Molecular Recognition Steps of McjA Precursor during Microcin J25 Lasso Peptide Maturation.

Assrir N, Pavelkova A, Dazzoni R, Ducasse R, Morellet N, Guittet E, Rebuffat S, Zirah S, Li Y, Lescop E.

Chembiochem. 2016 Oct 4;17(19):1851-1858. doi: 10.1002/cbic.201600306. Epub 2016 Aug 12.

PMID:
27514791
15.

Preservation of Archaeal Surface Layer Structure During Mineralization.

Kish A, Miot J, Lombard C, Guigner JM, Bernard S, Zirah S, Guyot F.

Sci Rep. 2016 May 25;6:26152. doi: 10.1038/srep26152.

16.

IRMPD Spectroscopy: Evidence of Hydrogen Bonding in the Gas Phase Conformations of Lasso Peptides and their Branched-Cyclic Topoisomers.

Jeanne Dit Fouque K, Lavanant H, Zirah S, Steinmetz V, Rebuffat S, Maître P, Afonso C.

J Phys Chem A. 2016 Jun 2;120(21):3810-6. doi: 10.1021/acs.jpca.6b04496. Epub 2016 May 19.

PMID:
27171649
17.

Characterization of Sviceucin from Streptomyces Provides Insight into Enzyme Exchangeability and Disulfide Bond Formation in Lasso Peptides.

Li Y, Ducasse R, Zirah S, Blond A, Goulard C, Lescop E, Giraud C, Hartke A, Guittet E, Pernodet JL, Rebuffat S.

ACS Chem Biol. 2015 Nov 20;10(11):2641-9. doi: 10.1021/acschembio.5b00584. Epub 2015 Sep 21.

PMID:
26343290
18.

Gas-phase conformations of capistruin - comparison of lasso, branched-cyclic and linear topologies.

Jeanne Dit Fouque K, Lavanant H, Zirah S, Lemoine J, Rebuffat S, Tabet JC, Kulesza A, Afonso C, Dugourd P, Chirot F.

Rapid Commun Mass Spectrom. 2015 Aug 15;29(15):1411-9. doi: 10.1002/rcm.7231.

PMID:
26147481
19.

Sponging up metals: bacteria associated with the marine sponge Spongia officinalis.

Bauvais C, Zirah S, Piette L, Chaspoul F, Domart-Coulon I, Chapon V, Gallice P, Rebuffat S, Pérez T, Bourguet-Kondracki ML.

Mar Environ Res. 2015 Mar;104:20-30. doi: 10.1016/j.marenvres.2014.12.005. Epub 2014 Dec 26.

PMID:
25575352
20.

Ion mobility-mass spectrometry of lasso peptides: signature of a rotaxane topology.

Jeanne Dit Fouque K, Afonso C, Zirah S, Hegemann JD, Zimmermann M, Marahiel MA, Rebuffat S, Lavanant H.

Anal Chem. 2015 Jan 20;87(2):1166-72. doi: 10.1021/ac503772n. Epub 2014 Dec 31.

PMID:
25495527
21.

Structure of an antibacterial peptide ATP-binding cassette transporter in a novel outward occluded state.

Choudhury HG, Tong Z, Mathavan I, Li Y, Iwata S, Zirah S, Rebuffat S, van Veen HW, Beis K.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9145-50. doi: 10.1073/pnas.1320506111. Epub 2014 Jun 11.

22.

Structural basis for hijacking siderophore receptors by antimicrobial lasso peptides.

Mathavan I, Zirah S, Mehmood S, Choudhury HG, Goulard C, Li Y, Robinson CV, Rebuffat S, Beis K.

Nat Chem Biol. 2014 May;10(5):340-2. doi: 10.1038/nchembio.1499. Epub 2014 Apr 6.

23.

Thiazole-based γ-building blocks as reverse-turn mimetic to design a gramicidin S analogue: conformational and biological evaluation.

Legrand B, Mathieu L, Lebrun A, Andriamanarivo S, Lisowski V, Masurier N, Zirah S, Kang YK, Martinez J, Maillard LT.

Chemistry. 2014 May 26;20(22):6713-20. doi: 10.1002/chem.201402190. Epub 2014 Mar 25.

PMID:
24668890
24.

Prompt and slow electron-detachment-dissociation/electron-photodetachment-dissociation of a 21-mer peptide.

Pérot-Taillandier M, Zirah S, Enjalbert Q, Antoine R, Lemoine J, Dugourd P, Rebuffat S, Tabet JC, Afonso C.

Chemistry. 2013 Jan 2;19(1):350-7. doi: 10.1002/chem.201202578. Epub 2012 Nov 23.

PMID:
23180738
25.

Determination of peptide topology through time-resolved double-resonance under electron capture dissociation conditions.

Pérot-Taillandier M, Zirah S, Rebuffat S, Linne U, Marahiel MA, Cole RB, Tabet JC, Afonso C.

Anal Chem. 2012 Jun 5;84(11):4957-64. doi: 10.1021/ac300607y. Epub 2012 May 11.

PMID:
22571326
26.

Dissecting the maturation steps of the lasso peptide microcin J25 in vitro.

Yan KP, Li Y, Zirah S, Goulard C, Knappe TA, Marahiel MA, Rebuffat S.

Chembiochem. 2012 May 7;13(7):1046-52. doi: 10.1002/cbic.201200016. Epub 2012 Apr 5.

PMID:
22488892
27.

Sequence determinants governing the topology and biological activity of a lasso peptide, microcin J25.

Ducasse R, Yan KP, Goulard C, Blond A, Li Y, Lescop E, Guittet E, Rebuffat S, Zirah S.

Chembiochem. 2012 Feb 13;13(3):371-80. doi: 10.1002/cbic.201100702. Epub 2012 Jan 27.

PMID:
22287061
28.

Unprecedented occurrence of isoaspartic acid in a plant cyclopeptide.

Lacroix D, Prado S, Kamoga D, Kasenene J, Zirah S, Bodo B.

Org Lett. 2012 Jan 20;14(2):576-9. doi: 10.1021/ol203190f. Epub 2012 Jan 5.

PMID:
22220690
29.

Isolation and characterization of environmental bacteria capable of extracellular biosorption of mercury.

François F, Lombard C, Guigner JM, Soreau P, Brian-Jaisson F, Martino G, Vandervennet M, Garcia D, Molinier AL, Pignol D, Peduzzi J, Zirah S, Rebuffat S.

Appl Environ Microbiol. 2012 Feb;78(4):1097-106. doi: 10.1128/AEM.06522-11. Epub 2011 Dec 9.

30.

Topoisomer differentiation of molecular knots by FTICR MS: lessons from class II lasso peptides.

Zirah S, Afonso C, Linne U, Knappe TA, Marahiel MA, Rebuffat S, Tabet JC.

J Am Soc Mass Spectrom. 2011 Mar;22(3):467-79. doi: 10.1007/s13361-010-0028-1. Epub 2011 Feb 10.

PMID:
21472565
31.

Post-translational modification and folding of a lasso-type gene-encoded antimicrobial peptide require two enzymes only in Escherichia coli.

Duquesne S, Destoumieux-Garzón D, Zirah S, Knappe TA, Goulard C, Peduzzi J, Marahiel MA, Rebuffat S.

Adv Exp Med Biol. 2009;611:35-6. No abstract available.

PMID:
19400082
32.

Biosynthesis of siderophore-peptides, a class of potent antimicrobial peptides from enterobacteria, of requires two precursors.

Vassiliadis G, Peduzzi J, Destoumieux-Garzón D, Zirah S, Thomas X, Rebuffat S.

Adv Exp Med Biol. 2009;611:33-4. No abstract available.

PMID:
19400081
33.

Isolation and structural characterization of capistruin, a lasso peptide predicted from the genome sequence of Burkholderia thailandensis E264.

Knappe TA, Linne U, Zirah S, Rebuffat S, Xie X, Marahiel MA.

J Am Chem Soc. 2008 Aug 27;130(34):11446-54. doi: 10.1021/ja802966g. Epub 2008 Aug 1.

PMID:
18671394
34.

Collision induced dissociation-based characterization of nucleotide peptides: fragmentation patterns of microcin C7-C51, an antimicrobial peptide produced by Escherichia coli.

Petit VW, Zirah S, Rebuffat S, Tabet JC.

J Am Soc Mass Spectrom. 2008 Aug;19(8):1187-98. doi: 10.1016/j.jasms.2008.04.020. Epub 2008 Apr 11.

35.

Two enzymes catalyze the maturation of a lasso peptide in Escherichia coli.

Duquesne S, Destoumieux-Garzón D, Zirah S, Goulard C, Peduzzi J, Rebuffat S.

Chem Biol. 2007 Jul;14(7):793-803.

36.

Insight into siderophore-carrying peptide biosynthesis: enterobactin is a precursor for microcin E492 posttranslational modification.

Vassiliadis G, Peduzzi J, Zirah S, Thomas X, Rebuffat S, Destoumieux-Garzón D.

Antimicrob Agents Chemother. 2007 Oct;51(10):3546-53. Epub 2007 Jul 23.

37.

Experimental and analytical variation in human urine in 1H NMR spectroscopy-based metabolic phenotyping studies.

Maher AD, Zirah SF, Holmes E, Nicholson JK.

Anal Chem. 2007 Jul 15;79(14):5204-11. Epub 2007 Jun 8.

PMID:
17555297
38.

A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model.

Martin FP, Dumas ME, Wang Y, Legido-Quigley C, Yap IK, Tang H, Zirah S, Murphy GM, Cloarec O, Lindon JC, Sprenger N, Fay LB, Kochhar S, van Bladeren P, Holmes E, Nicholson JK.

Mol Syst Biol. 2007;3:112. Epub 2007 May 22.

39.

Combined proteomic and metabonomic studies in three genetic forms of the renal Fanconi syndrome.

Vilasi A, Cutillas PR, Maher AD, Zirah SF, Capasso G, Norden AW, Holmes E, Nicholson JK, Unwin RJ.

Am J Physiol Renal Physiol. 2007 Aug;293(2):F456-67. Epub 2007 May 9.

40.

Statistical search space reduction and two-dimensional data display approaches for UPLC-MS in biomarker discovery and pathway analysis.

Crockford DJ, Lindon JC, Cloarec O, Plumb RS, Bruce SJ, Zirah S, Rainville P, Stumpf CL, Johnson K, Holmes E, Nicholson JK.

Anal Chem. 2006 Jul 1;78(13):4398-408.

PMID:
16808447
41.

Statistical heterospectroscopy, an approach to the integrated analysis of NMR and UPLC-MS data sets: application in metabonomic toxicology studies.

Crockford DJ, Holmes E, Lindon JC, Plumb RS, Zirah S, Bruce SJ, Rainville P, Stumpf CL, Nicholson JK.

Anal Chem. 2006 Jan 15;78(2):363-71.

PMID:
16408915
42.

Structural changes of region 1-16 of the Alzheimer disease amyloid beta-peptide upon zinc binding and in vitro aging.

Zirah S, Kozin SA, Mazur AK, Blond A, Cheminant M, Ségalas-Milazzo I, Debey P, Rebuffat S.

J Biol Chem. 2006 Jan 27;281(4):2151-61. Epub 2005 Nov 21.

43.

Zinc binding agonist effect on the recognition of the beta-amyloid (4-10) epitope by anti-beta-amyloid antibodies.

Zirah S, Stefanescu R, Manea M, Tian X, Cecal R, Kozin SA, Debey P, Rebuffat S, Przybylski M.

Biochem Biophys Res Commun. 2004 Aug 20;321(2):324-8.

PMID:
15358179
44.

Zinc binding to Alzheimer's Abeta(1-16) peptide results in stable soluble complex.

Kozin SA, Zirah S, Rebuffat S, Hoa GH, Debey P.

Biochem Biophys Res Commun. 2001 Jul 27;285(4):959-64.

PMID:
11467845

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