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Items: 1 to 50 of 91

1.

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria.

Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH.

Front Microbiol. 2017 Sep 4;8:1623. doi: 10.3389/fmicb.2017.01623. eCollection 2017.

2.

Anaerobic Dehalogenation of Chloroanilines by Dehalococcoides mccartyi Strain CBDB1 and Dehalobacter Strain 14DCB1 via Different Pathways as Related to Molecular Electronic Structure.

Zhang S, Wondrousch D, Cooper M, Zinder SH, Schüürmann G, Adrian L.

Environ Sci Technol. 2017 Apr 4;51(7):3714-3724. doi: 10.1021/acs.est.6b05730. Epub 2017 Mar 15.

PMID:
28233989
3.

Dehalococcoides has a dehalogenation complex.

Zinder SH.

Environ Microbiol. 2016 Sep;18(9):2773-5. doi: 10.1111/1462-2920.13204. Epub 2016 Feb 4. No abstract available.

PMID:
26743438
4.

Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland.

Cadillo-Quiroz H, Browne P, Kyrpides N, Woyke T, Goodwin L, Detter C, Yavitt JB, Zinder SH.

Genome Announc. 2015 Nov 5;3(6). pii: e01280-15. doi: 10.1128/genomeA.01280-15.

5.

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.

Löffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Müller JA, Fullerton H, Zinder SH, Spormann AM.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):2015. doi: 10.1099/ijs.0.000308. No abstract available.

PMID:
26184667
6.

Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments.

Bräuer S, Cadillo-Quiroz H, Kyrpides N, Woyke T, Goodwin L, Detter C, Podell S, Yavitt JB, Zinder SH.

Microbiology. 2015 Aug;161(8):1572-81. doi: 10.1099/mic.0.000117. Epub 2015 May 21.

PMID:
25998264
7.

Complete Genome Sequence of Methanolinea tarda NOBI-1T, a Hydrogenotrophic Methanogen Isolated from Methanogenic Digester Sludge.

Yamamoto K, Tamaki H, Cadillo-Quiroz H, Imachi H, Kyrpides N, Woyke T, Goodwin L, Zinder SH, Kamagata Y, Liu WT.

Genome Announc. 2014 Sep 4;2(5). pii: e00876-14. doi: 10.1128/genomeA.00876-14.

8.

Complete Genome Sequence of Methanoregula formicica SMSPT, a Mesophilic Hydrogenotrophic Methanogen Isolated from a Methanogenic Upflow Anaerobic Sludge Blanket Reactor.

Yamamoto K, Tamaki H, Cadillo-Quiroz H, Imachi H, Kyrpides N, Woyke T, Goodwin L, Zinder SH, Kamagata Y, Liu WT.

Genome Announc. 2014 Sep 4;2(5). pii: e00870-14. doi: 10.1128/genomeA.00870-14.

9.

Isolation of an aerobic vinyl chloride oxidizer from anaerobic groundwater.

Fullerton H, Rogers R, Freedman DL, Zinder SH.

Biodegradation. 2014 Nov;25(6):893-901. doi: 10.1007/s10532-014-9708-z. Epub 2014 Aug 24.

PMID:
25151178
10.

Meta-analyses of Dehalococcoides mccartyi strain 195 transcriptomic profiles identify a respiration rate-related gene expression transition point and interoperon recruitment of a key oxidoreductase subunit.

Mansfeldt CB, Rowe AR, Heavner GL, Zinder SH, Richardson RE.

Appl Environ Microbiol. 2014 Oct;80(19):6062-72. doi: 10.1128/AEM.02130-14. Epub 2014 Jul 25.

11.

Microbial sequencing analyses suggest the presence of a fecal veneer on indoor climbing wall holds.

Bräuer SL, Vuono D, Carmichael MJ, Pepe-Ranney C, Strom A, Rabinowitz E, Buckley DH, Zinder SH.

Curr Microbiol. 2014 Nov;69(5):681-9. doi: 10.1007/s00284-014-0643-3. Epub 2014 Jun 28.

PMID:
24972665
12.

Distinct carbon isotope fractionation during anaerobic degradation of dichlorobenzene isomers.

Liang X, Mundle SO, Nelson JL, Passeport E, Chan CC, Lacrampe-Couloume G, Zinder SH, Sherwood Lollar B.

Environ Sci Technol. 2014 May 6;48(9):4844-51. doi: 10.1021/es4054384. Epub 2014 Apr 23.

PMID:
24758692
13.

Dehalogenation of chlorobenzenes, dichlorotoluenes, and tetrachloroethene by three Dehalobacter spp.

Nelson JL, Jiang J, Zinder SH.

Environ Sci Technol. 2014 Apr 1;48(7):3776-82. doi: 10.1021/es4044769. Epub 2014 Mar 18.

PMID:
24593835
14.

Methanobacterium paludis sp. nov. and a novel strain of Methanobacterium lacus isolated from northern peatlands.

Cadillo-Quiroz H, Bräuer SL, Goodson N, Yavitt JB, Zinder SH.

Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1473-80. doi: 10.1099/ijs.0.059964-0. Epub 2014 Jan 21.

PMID:
24449792
15.

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh.

Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ.

Environ Microbiol. 2014 Nov;16(11):3398-415. doi: 10.1111/1462-2920.12388. Epub 2014 Feb 26.

16.

Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis.

Blasiak LC, Zinder SH, Buckley DH, Hill RT.

ISME J. 2014 Feb;8(2):309-20. doi: 10.1038/ismej.2013.156. Epub 2013 Sep 19.

17.

Anaerobic oxidation of ethene coupled to sulfate reduction in microcosms and enrichment cultures.

Fullerton H, Crawford M, Bakenne A, Freedman DL, Zinder SH.

Environ Sci Technol. 2013;47(21):12374-81. doi: 10.1021/es4029765. Epub 2013 Oct 9.

PMID:
24033278
18.

Molecular characterization of the enzymes involved in the degradation of a brominated aromatic herbicide.

Chen K, Huang L, Xu C, Liu X, He J, Zinder SH, Li S, Jiang J.

Mol Microbiol. 2013 Sep;89(6):1121-39. doi: 10.1111/mmi.12332. Epub 2013 Jul 31.

19.

Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply.

West KA, Lee PK, Johnson DR, Zinder SH, Alvarez-Cohen L.

Biotechnol Bioeng. 2013 May;110(5):1333-41. doi: 10.1002/bit.24819. Epub 2013 Feb 9.

PMID:
23280440
20.

Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat.

Armitage DW, Gallagher KL, Youngblut ND, Buckley DH, Zinder SH.

Front Microbiol. 2012 Aug 10;3:293. doi: 10.3389/fmicb.2012.00293. eCollection 2012.

21.
22.

Seasonal changes in methanogenesis and methanogenic community in three peatlands, new york state.

Sun CL, Brauer SL, Cadillo-Quiroz H, Zinder SH, Yavitt JB.

Front Microbiol. 2012 Mar 6;3:81. doi: 10.3389/fmicb.2012.00081. eCollection 2012.

23.

Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation.

Lee PK, Dill BD, Louie TS, Shah M, Verberkmoes NC, Andersen GL, Zinder SH, Alvarez-Cohen L.

Appl Environ Microbiol. 2012 Mar;78(5):1424-36. doi: 10.1128/AEM.06792-11. Epub 2011 Dec 16.

24.

Proteomic and physiological experiments to test Thermotoga neapolitana constraint-based model hypotheses of carbon source utilization.

Munro SA, Choe L, Zinder SH, Lee KH, Walker LP.

Biotechnol Prog. 2012 Mar-Apr;28(2):312-8. doi: 10.1002/btpr.735. Epub 2011 Oct 27.

PMID:
22034176
25.

Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity.

Zhuang WQ, Yi S, Feng X, Zinder SH, Tang YJ, Alvarez-Cohen L.

Appl Environ Microbiol. 2011 Nov;77(21):7797-803. doi: 10.1128/AEM.05676-11. Epub 2011 Sep 2.

26.

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses.

Men Y, Feil H, Verberkmoes NC, Shah MB, Johnson DR, Lee PK, West KA, Zinder SH, Andersen GL, Alvarez-Cohen L.

ISME J. 2012 Feb;6(2):410-21. doi: 10.1038/ismej.2011.111. Epub 2011 Sep 1.

27.

Pathway-dependent isotope fractionation during aerobic and anaerobic degradation of monochlorobenzene and 1,2,4-trichlorobenzene.

Liang X, Howlett MR, Nelson JL, Grant G, Dworatzek S, Lacrampe-Couloume G, Zinder SH, Edwards EA, Sherwood Lollar B.

Environ Sci Technol. 2011 Oct 1;45(19):8321-7. doi: 10.1021/es201224x. Epub 2011 Sep 9.

PMID:
21851082
28.

Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales.

Sakai S, Ehara M, Tseng IC, Yamaguchi T, Bräuer SL, Cadillo-Quiroz H, Zinder SH, Imachi H.

Int J Syst Evol Microbiol. 2012 Jun;62(Pt 6):1389-95. doi: 10.1099/ijs.0.035048-0. Epub 2011 Aug 12.

PMID:
21841010
29.

A role for Dehalobacter spp. in the reductive dehalogenation of dichlorobenzenes and monochlorobenzene.

Nelson JL, Fung JM, Cadillo-Quiroz H, Cheng X, Zinder SH.

Environ Sci Technol. 2011 Aug 15;45(16):6806-13. doi: 10.1021/es200480k. Epub 2011 Jul 18.

PMID:
21732639
30.

Multicellular photo-magnetotactic bacteria.

Shapiro OH, Hatzenpichler R, Buckley DH, Zinder SH, Orphan VJ.

Environ Microbiol Rep. 2011 Apr;3(2):233-8. doi: 10.1111/j.1758-2229.2010.00215.x. Epub 2010 Sep 30.

PMID:
23761255
31.

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray.

Lee PK, Cheng D, Hu P, West KA, Dick GJ, Brodie EL, Andersen GL, Zinder SH, He J, Alvarez-Cohen L.

ISME J. 2011 Jun;5(6):1014-24. doi: 10.1038/ismej.2010.202. Epub 2011 Jan 13.

32.

Waste to bioproduct conversion with undefined mixed cultures: the carboxylate platform.

Agler MT, Wrenn BA, Zinder SH, Angenent LT.

Trends Biotechnol. 2011 Feb;29(2):70-8. doi: 10.1016/j.tibtech.2010.11.006. Epub 2010 Dec 27. Review.

PMID:
21190748
33.

Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog.

Bräuer SL, Cadillo-Quiroz H, Ward RJ, Yavitt JB, Zinder SH.

Int J Syst Evol Microbiol. 2011 Jan;61(Pt 1):45-52. doi: 10.1099/ijs.0.021782-0. Epub 2010 Feb 12.

PMID:
20154331
34.

Diversity and community structure of Archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog.

Cadillo-Quiroz H, Yavitt JB, Zinder SH, Thies JE.

Microb Ecol. 2010 May;59(4):757-67. doi: 10.1007/s00248-009-9628-3. Epub 2009 Dec 22.

PMID:
20024684
35.

Evidence for nitrogen fixation by "Dehalococcoides ethenogenes" strain 195.

Lee PK, He J, Zinder SH, Alvarez-Cohen L.

Appl Environ Microbiol. 2009 Dec;75(23):7551-5. doi: 10.1128/AEM.01886-09. Epub 2009 Oct 9. Review.

36.

The fermentation stoichiometry of Thermotoga neapolitana and influence of temperature, oxygen, and pH on hydrogen production.

Munro SA, Zinder SH, Walker LP.

Biotechnol Prog. 2009 Jul-Aug;25(4):1035-42. doi: 10.1002/btpr.201.

PMID:
19551880
37.

Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses.

Tang YJ, Yi S, Zhuang WQ, Zinder SH, Keasling JD, Alvarez-Cohen L.

J Bacteriol. 2009 Aug;191(16):5224-31. doi: 10.1128/JB.00085-09. Epub 2009 Jun 12.

38.

Reductive dehalogenation of dichlorobenzenes and monochlorobenzene to benzene in microcosms.

Fung JM, Weisenstein BP, Mack EE, Vidumsky JE, Ei TA, Zinder SH.

Environ Sci Technol. 2009 Apr 1;43(7):2302-7.

PMID:
19452878
39.

Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland.

Cadillo-Quiroz H, Yavitt JB, Zinder SH.

Int J Syst Evol Microbiol. 2009 May;59(Pt 5):928-35. doi: 10.1099/ijs.0.006890-0.

PMID:
19406770
40.

Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195.

Johnson DR, Nemir A, Andersen GL, Zinder SH, Alvarez-Cohen L.

FEMS Microbiol Lett. 2009 May;294(2):198-206. doi: 10.1111/j.1574-6968.2009.01569.x. Epub 2009 Apr 1.

41.

Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains.

West KA, Johnson DR, Hu P, DeSantis TZ, Brodie EL, Lee PK, Feil H, Andersen GL, Zinder SH, Alvarez-Cohen L.

Appl Environ Microbiol. 2008 Jun;74(11):3533-40. doi: 10.1128/AEM.01835-07. Epub 2008 Mar 21.

42.

Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase.

Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L.

Appl Environ Microbiol. 2008 May;74(9):2864-72. doi: 10.1128/AEM.02208-07. Epub 2008 Feb 29.

43.

Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen.

Cadillo-Quiroz H, Yashiro E, Yavitt JB, Zinder SH.

Appl Environ Microbiol. 2008 Apr;74(7):2059-68. doi: 10.1128/AEM.02222-07. Epub 2008 Feb 15.

44.
45.

Growth of Dehalococcoides strains with chlorophenols as electron acceptors.

Adrian L, Hansen SK, Fung JM, Görisch H, Zinder SH.

Environ Sci Technol. 2007 Apr 1;41(7):2318-23.

PMID:
17438781
46.

Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity.

Morris RM, Fung JM, Rahm BG, Zhang S, Freedman DL, Zinder SH, Richardson RE.

Appl Environ Microbiol. 2007 Jan;73(1):320-6. Epub 2006 Nov 10.

47.

Characterization of acid-tolerant H/CO-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State.

Bräuer SL, Yashiro E, Ueno NG, Yavitt JB, Zinder SH.

FEMS Microbiol Ecol. 2006 Aug;57(2):206-16.

48.

Isolation of a novel acidiphilic methanogen from an acidic peat bog.

Bräuer SL, Cadillo-Quiroz H, Yashiro E, Yavitt JB, Zinder SH.

Nature. 2006 Jul 13;442(7099):192-4. Epub 2006 May 14.

PMID:
16699521
49.

Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1.

Kube M, Beck A, Zinder SH, Kuhl H, Reinhardt R, Adrian L.

Nat Biotechnol. 2005 Oct;23(10):1269-73. Epub 2005 Aug 21.

PMID:
16116419
50.

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