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Items: 23

1.

Revisiting Trypanosome Mitochondrial Genome Mysteries: Broader and Deeper.

Zimmer SL.

Trends Parasitol. 2019 Feb;35(2):102-104. doi: 10.1016/j.pt.2018.09.006. Epub 2018 Oct 9. Review.

PMID:
30314806
2.

Advances in Emerging and Neglected Infectious Diseases 2018.

Spencer CT, Vasconcelos JR, Thornburg NJ, Zimmer SL.

Biomed Res Int. 2018 Jul 15;2018:4619282. doi: 10.1155/2018/4619282. eCollection 2018. No abstract available.

3.

High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Zimmer SL, Simpson RM, Read LK.

Wiley Interdiscip Rev RNA. 2018 Jun 11:e1487. doi: 10.1002/wrna.1487. [Epub ahead of print] Review.

PMID:
29888550
4.

Gene expression to mitochondrial metabolism: Variability among cultured Trypanosoma cruzi strains.

Kalem MC, Gerasimov ES, Vu PK, Zimmer SL.

PLoS One. 2018 May 30;13(5):e0197983. doi: 10.1371/journal.pone.0197983. eCollection 2018.

5.

Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Gerasimov ES, Gasparyan AA, Kaurov I, Tichý B, Logacheva MD, Kolesnikov AA, Lukeš J, Yurchenko V, Zimmer SL, Flegontov P.

Nucleic Acids Res. 2018 Jan 25;46(2):765-781. doi: 10.1093/nar/gkx1202.

6.

Tail characteristics of Trypanosoma brucei mitochondrial transcripts are developmentally altered in a transcript-specific manner.

Gazestani VH, Hampton M, Shaw AK, Salavati R, Zimmer SL.

Int J Parasitol. 2018 Feb;48(2):179-189. doi: 10.1016/j.ijpara.2017.08.012. Epub 2017 Nov 1.

PMID:
29100810
7.

A putative ATP/GTP binding protein affects Leishmania mexicana growth in insect vectors and vertebrate hosts.

Ishemgulova A, Kraeva N, Hlaváčová J, Zimmer SL, Butenko A, Podešvová L, Leštinová T, Lukeš J, Kostygov A, Votýpka J, Volf P, Yurchenko V.

PLoS Negl Trop Dis. 2017 Jul 24;11(7):e0005782. doi: 10.1371/journal.pntd.0005782. eCollection 2017 Jul.

8.

The interaction of a Trypanosoma brucei KH-domain protein with a ribonuclease is implicated in ribosome processing.

Kala S, Mehta V, Yip CW, Moshiri H, Najafabadi HS, Ma R, Nikpour N, Zimmer SL, Salavati R.

Mol Biochem Parasitol. 2017 Jan;211:94-103. doi: 10.1016/j.molbiopara.2016.12.003. Epub 2016 Dec 11.

PMID:
27965085
9.

Mitochondrial Gene Expression Is Responsive to Starvation Stress and Developmental Transition in Trypanosoma cruzi.

Shaw AK, Kalem MC, Zimmer SL.

mSphere. 2016 Apr 13;1(2). pii: e00051-16. doi: 10.1128/mSphere.00051-16. eCollection 2016 Mar-Apr.

10.

circTAIL-seq, a targeted method for deep analysis of RNA 3' tails, reveals transcript-specific differences by multiple metrics.

Gazestani VH, Hampton M, Abrahante JE, Salavati R, Zimmer SL.

RNA. 2016 Mar;22(3):477-86. doi: 10.1261/rna.054494.115. Epub 2016 Jan 12.

11.

Ribosome biogenesis requires a highly diverged XRN family 5'->3' exoribonuclease for rRNA processing in Trypanosoma brucei.

Sakyiama J, Zimmer SL, Ciganda M, Williams N, Read LK.

RNA. 2013 Oct;19(10):1419-31. doi: 10.1261/rna.038547.113. Epub 2013 Aug 23.

12.

Dual core processing: MRB1 is an emerging kinetoplast RNA editing complex.

Hashimi H, Zimmer SL, Ammerman ML, Read LK, Lukeš J.

Trends Parasitol. 2013 Feb;29(2):91-9. doi: 10.1016/j.pt.2012.11.005. Epub 2013 Jan 8. Review.

13.

Functional characterization of two paralogs that are novel RNA binding proteins influencing mitochondrial transcripts of Trypanosoma brucei.

Kafková L, Ammerman ML, Faktorová D, Fisk JC, Zimmer SL, Sobotka R, Read LK, Lukes J, Hashimi H.

RNA. 2012 Oct;18(10):1846-61. doi: 10.1261/rna.033852.112. Epub 2012 Aug 16. Erratum in: RNA. 2012 Dec;18(12):2345.

14.

Additive and transcript-specific effects of KPAP1 and TbRND activities on 3' non-encoded tail characteristics and mRNA stability in Trypanosoma brucei.

Zimmer SL, McEvoy SM, Menon S, Read LK.

PLoS One. 2012;7(5):e37639. doi: 10.1371/journal.pone.0037639. Epub 2012 May 21.

15.

Marked for translation: long A/U tails as an interface between completion of RNA editing and ribosome recruitment.

Read LK, Zimmer SL, Ammerman ML.

Mol Cell. 2011 Apr 8;42(1):6-8. doi: 10.1016/j.molcel.2011.03.013.

16.

A novel member of the RNase D exoribonuclease family functions in mitochondrial guide RNA metabolism in Trypanosoma brucei.

Zimmer SL, McEvoy SM, Li J, Qu J, Read LK.

J Biol Chem. 2011 Mar 25;286(12):10329-40. doi: 10.1074/jbc.M110.152439. Epub 2011 Jan 20.

17.

Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.

Zimmer SL, Schein A, Zipor G, Stern DB, Schuster G.

Plant J. 2009 Jul;59(1):88-99. doi: 10.1111/j.1365-313X.2009.03853.x. Epub 2009 Feb 26.

18.
19.

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, Kapitonov VV, Ren Q, Ferris P, Lindquist E, Shapiro H, Lucas SM, Grimwood J, Schmutz J, Cardol P, Cerutti H, Chanfreau G, Chen CL, Cognat V, Croft MT, Dent R, Dutcher S, Fernández E, Fukuzawa H, González-Ballester D, González-Halphen D, Hallmann A, Hanikenne M, Hippler M, Inwood W, Jabbari K, Kalanon M, Kuras R, Lefebvre PA, Lemaire SD, Lobanov AV, Lohr M, Manuell A, Meier I, Mets L, Mittag M, Mittelmeier T, Moroney JV, Moseley J, Napoli C, Nedelcu AM, Niyogi K, Novoselov SV, Paulsen IT, Pazour G, Purton S, Ral JP, Riaño-Pachón DM, Riekhof W, Rymarquis L, Schroda M, Stern D, Umen J, Willows R, Wilson N, Zimmer SL, Allmer J, Balk J, Bisova K, Chen CJ, Elias M, Gendler K, Hauser C, Lamb MR, Ledford H, Long JC, Minagawa J, Page MD, Pan J, Pootakham W, Roje S, Rose A, Stahlberg E, Terauchi AM, Yang P, Ball S, Bowler C, Dieckmann CL, Gladyshev VN, Green P, Jorgensen R, Mayfield S, Mueller-Roeber B, Rajamani S, Sayre RT, Brokstein P, Dubchak I, Goodstein D, Hornick L, Huang YW, Jhaveri J, Luo Y, Martínez D, Ngau WC, Otillar B, Poliakov A, Porter A, Szajkowski L, Werner G, Zhou K, Grigoriev IV, Rokhsar DS, Grossman AR.

Science. 2007 Oct 12;318(5848):245-50.

20.

Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii.

Yehudai-Resheff S, Zimmer SL, Komine Y, Stern DB.

Plant Cell. 2007 Mar;19(3):1023-38. Epub 2007 Mar 9.

21.

Antisense transcript and RNA processing alterations suppress instability of polyadenylated mRNA in chlamydomonas chloroplasts.

Nishimura Y, Kikis EA, Zimmer SL, Komine Y, Stern DB.

Plant Cell. 2004 Nov;16(11):2849-69. Epub 2004 Oct 14.

22.

Antibiotic-inducible promoter regulated by the cell envelope stress-sensing two-component system LiaRS of Bacillus subtilis.

Mascher T, Zimmer SL, Smith TA, Helmann JD.

Antimicrob Agents Chemother. 2004 Aug;48(8):2888-96.

23.

Expression of the melanocortin 5 receptor on rat lymphocytes.

Akbulut S, Byersdorfer CA, Larsen CP, Zimmer SL, Humphreys TD, Clarke BL.

Biochem Biophys Res Commun. 2001 Mar;281(5):1086-92.

PMID:
11243846

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