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Items: 17

1.

Altered social behavior in mice carrying a cortical Foxp2 deletion.

Medvedeva VP, Rieger MA, Vieth B, Mombereau C, Ziegenhain C, Ghosh T, Cressant A, Enard W, Granon S, Dougherty JD, Groszer M.

Hum Mol Genet. 2018 Oct 23. doi: 10.1093/hmg/ddy372. [Epub ahead of print]

PMID:
30357341
2.

Transcriptional effects of actin-binding compounds: the cytoplasm sets the tone.

Gegenfurtner FA, Zisis T, Al Danaf N, Schrimpf W, Kliesmete Z, Ziegenhain C, Enard W, Kazmaier U, Lamb DC, Vollmar AM, Zahler S.

Cell Mol Life Sci. 2018 Sep 11. doi: 10.1007/s00018-018-2919-4. [Epub ahead of print]

PMID:
30206640
3.

Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa.

Granato ET, Ziegenhain C, Marvig RL, Kümmerli R.

ISME J. 2018 Jul 31. doi: 10.1038/s41396-018-0231-9. [Epub ahead of print]

PMID:
30065310
4.

Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq.

Bagnoli JW, Ziegenhain C, Janjic A, Wange LE, Vieth B, Parekh S, Geuder J, Hellmann I, Enard W.

Nat Commun. 2018 Jul 26;9(1):2937. doi: 10.1038/s41467-018-05347-6.

5.

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.

Parekh S, Ziegenhain C, Vieth B, Enard W, Hellmann I.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy059.

6.

Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing.

Gegenfurtner FA, Jahn B, Wagner H, Ziegenhain C, Enard W, Geistlinger L, Rädler JO, Vollmar AM, Zahler S.

J Cell Sci. 2018 May 29;131(10). pii: jcs212886. doi: 10.1242/jcs.212886.

PMID:
29724912
7.

Quantitative single-cell transcriptomics.

Ziegenhain C, Vieth B, Parekh S, Hellmann I, Enard W.

Brief Funct Genomics. 2018 Jul 1;17(4):220-232. doi: 10.1093/bfgp/ely009.

8.

Evolutionary routes and KRAS dosage define pancreatic cancer phenotypes.

Mueller S, Engleitner T, Maresch R, Zukowska M, Lange S, Kaltenbacher T, Konukiewitz B, Öllinger R, Zwiebel M, Strong A, Yen HY, Banerjee R, Louzada S, Fu B, Seidler B, Götzfried J, Schuck K, Hassan Z, Arbeiter A, Schönhuber N, Klein S, Veltkamp C, Friedrich M, Rad L, Barenboim M, Ziegenhain C, Hess J, Dovey OM, Eser S, Parekh S, Constantino-Casas F, de la Rosa J, Sierra MI, Fraga M, Mayerle J, Klöppel G, Cadiñanos J, Liu P, Vassiliou G, Weichert W, Steiger K, Enard W, Schmid RM, Yang F, Unger K, Schneider G, Varela I, Bradley A, Saur D, Rad R.

Nature. 2018 Feb 1;554(7690):62-68. doi: 10.1038/nature25459. Epub 2018 Jan 24.

9.

Azacitidine combined with the selective FLT3 kinase inhibitor crenolanib disrupts stromal protection and inhibits expansion of residual leukemia-initiating cells in FLT3-ITD AML with concurrent epigenetic mutations.

Garz AK, Wolf S, Grath S, Gaidzik V, Habringer S, Vick B, Rudelius M, Ziegenhain C, Herold S, Weickert MT, Smets M, Peschel C, Oostendorp RAJ, Bultmann S, Jeremias I, Thiede C, Döhner K, Keller U, Götze KS.

Oncotarget. 2017 Oct 16;8(65):108738-108759. doi: 10.18632/oncotarget.21877. eCollection 2017 Dec 12.

10.

GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency.

Krendl C, Shaposhnikov D, Rishko V, Ori C, Ziegenhain C, Sass S, Simon L, Müller NS, Straub T, Brooks KE, Chavez SL, Enard W, Theis FJ, Drukker M.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9579-E9588. doi: 10.1073/pnas.1708341114. Epub 2017 Oct 25.

11.

powsimR: power analysis for bulk and single cell RNA-seq experiments.

Vieth B, Ziegenhain C, Parekh S, Enard W, Hellmann I.

Bioinformatics. 2017 Nov 1;33(21):3486-3488. doi: 10.1093/bioinformatics/btx435.

PMID:
29036287
12.

Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes.

Witzel M, Petersheim D, Fan Y, Bahrami E, Racek T, Rohlfs M, Puchałka J, Mertes C, Gagneur J, Ziegenhain C, Enard W, Stray-Pedersen A, Arkwright PD, Abboud MR, Pazhakh V, Lieschke GJ, Krawitz PM, Dahlhoff M, Schneider MR, Wolf E, Horny HP, Schmidt H, Schäffer AA, Klein C.

Nat Genet. 2017 May;49(5):742-752. doi: 10.1038/ng.3833. Epub 2017 Apr 3.

13.

Comparative Analysis of Single-Cell RNA Sequencing Methods.

Ziegenhain C, Vieth B, Parekh S, Reinius B, Guillaumet-Adkins A, Smets M, Leonhardt H, Heyn H, Hellmann I, Enard W.

Mol Cell. 2017 Feb 16;65(4):631-643.e4. doi: 10.1016/j.molcel.2017.01.023.

14.

Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells.

Schreck C, Istvánffy R, Ziegenhain C, Sippenauer T, Ruf F, Henkel L, Gärtner F, Vieth B, Florian MC, Mende N, Taubenberger A, Prendergast Á, Wagner A, Pagel C, Grziwok S, Götze KS, Guck J, Dean DC, Massberg S, Essers M, Waskow C, Geiger H, Schiemann M, Peschel C, Enard W, Oostendorp RA.

J Exp Med. 2017 Jan;214(1):165-181. doi: 10.1084/jem.20151414. Epub 2016 Dec 20.

15.

Characterization of Rare, Dormant, and Therapy-Resistant Cells in Acute Lymphoblastic Leukemia.

Ebinger S, Özdemir EZ, Ziegenhain C, Tiedt S, Castro Alves C, Grunert M, Dworzak M, Lutz C, Turati VA, Enver T, Horny HP, Sotlar K, Parekh S, Spiekermann K, Hiddemann W, Schepers A, Polzer B, Kirsch S, Hoffmann M, Knapp B, Hasenauer J, Pfeifer H, Panzer-Grümayer R, Enard W, Gires O, Jeremias I.

Cancer Cell. 2016 Dec 12;30(6):849-862. doi: 10.1016/j.ccell.2016.11.002. Epub 2016 Dec 1.

16.

The impact of amplification on differential expression analyses by RNA-seq.

Parekh S, Ziegenhain C, Vieth B, Enard W, Hellmann I.

Sci Rep. 2016 May 9;6:25533. doi: 10.1038/srep25533.

17.

A new model for post-integration latency in macroglial cells to study HIV-1 reservoirs of the brain.

Schneider M, Tigges B, Meggendorfer M, Helfer M, Ziegenhain C, Brack-Werner R.

AIDS. 2015 Jun 19;29(10):1147-59. doi: 10.1097/QAD.0000000000000691.

PMID:
26035317

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