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Efficient haplotype matching between a query and a panel for genealogical search.

Naseri A, Holzhauser E, Zhi D, Zhang S.

Bioinformatics. 2019 Jul 15;35(14):i233-i241. doi: 10.1093/bioinformatics/btz347.


Research progress on the removal of hazardous perfluorochemicals: A review.

Li P, Zhi D, Zhang X, Zhu H, Li Z, Peng Y, He Y, Luo L, Rong X, Zhou Y.

J Environ Manage. 2019 Sep 6;250:109488. doi: 10.1016/j.jenvman.2019.109488. [Epub ahead of print]


Alterations in the Gut Microbiome at 6 Months of Age in Obese Latino Infants.

Ville A, Levine E, Zhi D, Lararia B, Wojcicki JM.

J Am Coll Nutr. 2019 Sep 9:1-7. doi: 10.1080/07315724.2019.1606744. [Epub ahead of print]


Assessment of combustion and emission behavior of corn straw biochar briquette fuels under different temperatures.

Wang T, Li Y, Zhi D, Lin Y, He K, Liu B, Mao H.

J Environ Manage. 2019 Aug 31;250:109399. doi: 10.1016/j.jenvman.2019.109399. [Epub ahead of print]


Ursolic acid isolated from Isodon excisoides induces apoptosis and inhibits invasion of GBC-SD gallbladder carcinoma cells.

Chen H, Wu X, Duan Y, Zhi D, Zou M, Zhao Z, Zhang X, Yang X, Zhang J.

Oncol Lett. 2019 Aug;18(2):1467-1474. doi: 10.3892/ol.2019.10397. Epub 2019 May 27.


Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.

Do AN, Zhao W, Baldridge AS, Raffield LM, Wiggins KL, Shah SJ, Aslibekyan S, Tiwari HK, Limdi N, Zhi D, Sitlani CM, Taylor KD, Psaty BM, Sotoodehnia N, Brody JA, Rasmussen-Torvik LJ, Lloyd-Jones D, Lange LA, Wilson JG, Smith JA, Kardia SLR, Mosley TH, Vasan RS, Arnett DK, Irvin MR.

Mol Genet Genomic Med. 2019 Aug 13:e788. doi: 10.1002/mgg3.788. [Epub ahead of print]


A sustainable ferromanganese biochar adsorbent for effective levofloxacin removal from aqueous medium.

Xiang Y, Xu Z, Zhou Y, Wei Y, Long X, He Y, Zhi D, Yang J, Luo L.

Chemosphere. 2019 Jul 29;237:124464. doi: 10.1016/j.chemosphere.2019.124464. [Epub ahead of print]


Combinational effect of curcumin and metformin against gentamicin-induced nephrotoxicity: Involvement of antioxidative, anti-inflammatory and antiapoptotic pathway.

Cao L, Zhi D, Han J, Kumar Sah S, Xie Y.

J Food Biochem. 2019 Jul;43(7):e12836. doi: 10.1111/jfbc.12836. Epub 2019 Mar 28.


RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts.

Naseri A, Liu X, Tang K, Zhang S, Zhi D.

Genome Biol. 2019 Jul 25;20(1):143. doi: 10.1186/s13059-019-1754-8.


A novel realgar-indigo naturalis formula more effectively induces apoptosis in NB4 cells.

Xie Q, Yu L, Wang X, Wu Z, Zhi D, Yang J, Guo Z, Wu T, Sun Y, Zhao L, Ding X, Khan A, Li H.

Pak J Pharm Sci. 2019 May;32(3):957-962.


Network context matters: graph convolutional network model over social networks improves the detection of unknown HIV infections among young men who have sex with men.

Xiang Y, Fujimoto K, Schneider J, Jia Y, Zhi D, Tao C.

J Am Med Inform Assoc. 2019 Jun 14. pii: ocz070. doi: 10.1093/jamia/ocz070. [Epub ahead of print]


hERG1 is involved in the pathophysiological process and inhibited by berberine in SKOV3 cells.

Zhi D, Zhou K, Yu D, Fan X, Zhang J, Li X, Dong M.

Oncol Lett. 2019 Jun;17(6):5653-5661. doi: 10.3892/ol.2019.10263. Epub 2019 Apr 17.


Multi-allelic positional Burrows-Wheeler transform.

Naseri A, Zhi D, Zhang S.

BMC Bioinformatics. 2019 Jun 6;20(Suppl 11):279. doi: 10.1186/s12859-019-2821-6.


Effect of ultrasound-assisted extraction on physicochemical properties and TLR2-affinity binding of the polysaccharides from Pholiota nameko.

Li H, Tao Y, Zhao P, Zhi D, Gao X, Zhao X, Li M.

Int J Biol Macromol. 2019 Aug 15;135:1020-1027. doi: 10.1016/j.ijbiomac.2019.05.177. Epub 2019 May 30.


Predicting gene expression using DNA methylation in three human populations.

Zhong H, Kim S, Zhi D, Cui X.

PeerJ. 2019 May 1;7:e6757. doi: 10.7717/peerj.6757. eCollection 2019.


Parallel group ICA+ICA: Joint estimation of linked functional network variability and structural covariation with application to schizophrenia.

Qi S, Sui J, Chen J, Liu J, Jiang R, Silva R, Iraji A, Damaraju E, Salman M, Lin D, Fu Z, Zhi D, Turner JA, Bustillo J, Ford JM, Mathalon DH, Voyvodic J, McEwen S, Preda A, Belger A, Potkin SG, Mueller BA, Adali T, Calhoun VD.

Hum Brain Mapp. 2019 Sep;40(13):3795-3809. doi: 10.1002/hbm.24632. Epub 2019 May 16.


Dysregulation of Akt-FOXO1 Pathway Leads to Dysfunction of Regulatory T Cells in Patients with Psoriasis.

Li B, Lei J, Yang L, Gao C, Dang E, Cao T, Xue K, Zhuang Y, Shao S, Zhi D, Hao J, Jin L, Qiao P, Ouyang W, Wang G.

J Invest Dermatol. 2019 Apr 15. pii: S0022-202X(19)31484-8. doi: 10.1016/j.jid.2018.12.035. [Epub ahead of print]


Time-sensitive clinical concept embeddings learned from large electronic health records.

Xiang Y, Xu J, Si Y, Li Z, Rasmy L, Zhou Y, Tiryaki F, Li F, Zhang Y, Wu Y, Jiang X, Zheng WJ, Zhi D, Tao C, Xu H.

BMC Med Inform Decis Mak. 2019 Apr 9;19(Suppl 2):58. doi: 10.1186/s12911-019-0766-3.


Coherent fiber-optics-array collimator based on a single unitary collimating lens: proposal design and experimental verification.

Zhang M, Zhi D, Ma Y, Ma P, Su R, Wu J, Zhou P, Si L.

Appl Opt. 2019 Feb 20;58(6):1491-1495. doi: 10.1364/AO.58.001491.


An Exome-Wide Sequencing Study of the GOLDN Cohort Reveals Novel Associations of Coding Variants and Fasting Plasma Lipids.

Geng X, Irvin MR, Hidalgo B, Aslibekyan S, Srinivasasainagendra V, An P, Frazier-Wood AC, Tiwari HK, Dave T, Ryan K, Ordovas JM, Straka RJ, Feitosa MF, Hopkins PN, Borecki I, Province MA, Mitchell BD, Arnett DK, Zhi D.

Front Genet. 2019 Feb 26;10:158. doi: 10.3389/fgene.2019.00158. eCollection 2019.


Highly efficient coherent conformal projection system based on adaptive fiber optics collimator array.

Zhi D, Ma Y, Tao R, Zhou P, Wang X, Chen Z, Si L.

Sci Rep. 2019 Feb 26;9(1):2783. doi: 10.1038/s41598-019-39304-0.


Supramolecular Nanofibers with Superior Bioactivity to Insulin-Like Growth Factor-I.

Shang Y, Zhi D, Feng G, Wang Z, Mao D, Guo S, Liu R, Liu L, Zhang S, Sun S, Wang K, Kong D, Gao J, Yang Z.

Nano Lett. 2019 Mar 13;19(3):1560-1569. doi: 10.1021/acs.nanolett.8b04406. Epub 2019 Feb 26.


The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics with bigger data and wider applications.

Wu Z, Yan J, Wang K, Liu X, Guo Y, Zhi D, Ruan J, Zhao Z.

BMC Genomics. 2019 Feb 4;20(Suppl 1):80. doi: 10.1186/s12864-018-5369-3.


Gene2vec: distributed representation of genes based on co-expression.

Du J, Jia P, Dai Y, Tao C, Zhao Z, Zhi D.

BMC Genomics. 2019 Feb 4;20(Suppl 1):82. doi: 10.1186/s12864-018-5370-x.


The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics meets medicine.

Zhi D, Zhao Z, Li F, Wu Z, Liu X, Wang K.

BMC Med Genomics. 2019 Jan 31;12(Suppl 1):20. doi: 10.1186/s12920-018-0448-5.


A PheWAS study of a large observational epidemiological cohort of African Americans from the REGARDS study.

Zhao X, Geng X, Srinivasasainagendra V, Chaudhary N, Judd S, Wadley V, Gutiérrez OM, Wang H, Lange EM, Lange LA, Woo D, Unverzagt FW, Safford M, Cushman M, Limdi N, Quarells R, Arnett DK, Irvin MR, Zhi D.

BMC Med Genomics. 2019 Jan 31;12(Suppl 1):26. doi: 10.1186/s12920-018-0462-7.


Genomic copy number variation of the CHKB gene alters gene expression and affects growth traits of Chinese domestic yak (Bos grunniens) breeds.

Goshu HA, Chu M, Xiaoyun W, Pengjia B, Zhi DX, Yan P.

Mol Genet Genomics. 2019 Jun;294(3):549-561. doi: 10.1007/s00438-018-01530-y. Epub 2019 Jan 11.


Cobalt-mediated multi-functional dressings promote bacteria-infected wound healing.

Shi Q, Luo X, Huang Z, Midgley AC, Wang B, Liu R, Zhi D, Wei T, Zhou X, Qiao M, Zhang J, Kong D, Wang K.

Acta Biomater. 2019 Mar 1;86:465-479. doi: 10.1016/j.actbio.2018.12.048. Epub 2018 Dec 30.


The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.

Liu X, Xie L, Wu Z, Wang K, Zhao Z, Ruan J, Zhi D.

BMC Bioinformatics. 2018 Dec 28;19(Suppl 17):492. doi: 10.1186/s12859-018-2460-3.


The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types.

Wang K, Liu X, Guo Y, Wu Z, Zhi D, Ruan J, Zhao Z.

BMC Syst Biol. 2018 Dec 21;12(Suppl 8):125. doi: 10.1186/s12918-018-0648-9.


"Magnus nano-bullets" as T1/T2 based dual-modal for in vitro and in vivo MRI visualization.

Khatik R, Wang Z, Li F, Zhi D, Kiran S, Dwivedi P, Xu RX, Liang G, Qiu B, Yang Q.

Nanomedicine. 2019 Jan;15(1):264-273. doi: 10.1016/j.nano.2018.10.005. Epub 2018 Oct 26.


Abnormal Dynamic Functional Network Connectivity and Graph Theoretical Analysis in Major Depressive Disorder.

Zhi D, Ma X, Lv L, Ke Q, Yang Y, Yang X, Pan M, Qi S, Jiang R, Du Y, Yu Q, Calhoun VD, Jiang T, Sui J.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:558-561. doi: 10.1109/EMBC.2018.8512340.


Four novel sesquiterpenoids with their anti-Alzheimer's disease activity from Nardostachys chinensis.

Wu PQ, Yu YF, Zhao Y, Yu CX, Zhi DJ, Qi FM, Fei DQ, Zhang ZX.

Org Biomol Chem. 2018 Nov 28;16(46):9038-9045. doi: 10.1039/c8ob02319k.


In situ blood vessel regeneration using neuropeptide substance P-conjugated small-diameter vascular grafts.

Shafiq M, Wang L, Zhi D, Zhang Q, Wang K, Wang L, Kim DH, Kong D, Kim SH.

J Biomed Mater Res B Appl Biomater. 2019 Jul;107(5):1669-1683. doi: 10.1002/jbm.b.34260. Epub 2018 Oct 13.


Anti-parasitic effects of water-soluble alkaloid fractions from ethanolic extracts of Sophora moorcroftiana seeds in Caenorhabditis elegans.

Luo YP, Zhang Y, Zhang HM, Zhang H, Zhang L, Yu HJ, Cao MQ, Shi YB, Zhi DJ, Ma XM, Dong KZ.

Chin J Nat Med. 2018 Sep;16(9):665-673. doi: 10.1016/S1875-5364(18)30106-7.


Spatially-distributed orbital angular momentum beam array generation based on greedy algorithms and coherent combining technology.

Hou T, Zhi D, Tao R, Ma Y, Zhou P, Liu Z.

Opt Express. 2018 Jun 11;26(12):14945-14958. doi: 10.1364/OE.26.014945.


Aberrant Dynamic Functional Network Connectivity and Graph Properties in Major Depressive Disorder.

Zhi D, Calhoun VD, Lv L, Ma X, Ke Q, Fu Z, Du Y, Yang Y, Yang X, Pan M, Qi S, Jiang R, Yu Q, Sui J.

Front Psychiatry. 2018 Jul 31;9:339. doi: 10.3389/fpsyt.2018.00339. eCollection 2018.


A multi-slot coaxial microwave antenna for liver tumor ablation.

Ge M, Jiang H, Huang X, Zhou Y, Zhi D, Zhao G, Chen Y, Wang L, Qiu B.

Phys Med Biol. 2018 Sep 6;63(17):175011. doi: 10.1088/1361-6560/aad9c5.


Correlation of the cytotoxic effects of cationic lipids with their headgroups.

Cui S, Wang Y, Gong Y, Lin X, Zhao Y, Zhi D, Zhou Q, Zhang S.

Toxicol Res (Camb). 2018 Mar 22;7(3):473-479. doi: 10.1039/c8tx00005k. eCollection 2018 May 8.


Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models.

Du J, Tang L, Xiang Y, Zhi D, Xu J, Song HY, Tao C.

J Med Internet Res. 2018 Jul 9;20(7):e236. doi: 10.2196/jmir.9413.


Kushui Rose (R. Setate x R. Rugosa) decoction exerts antitumor effects in C. elegans by downregulating Ras/MAPK pathway and resisting oxidative stress.

Liu Y, Zhi D, Wang X, Fei D, Zhang Z, Wu Z, Li Y, Chen P, Li H.

Int J Mol Med. 2018 Sep;42(3):1411-1417. doi: 10.3892/ijmm.2018.3738. Epub 2018 Jun 21.


Tweeting about measles during stages of an outbreak: A semantic network approach to the framing of an emerging infectious disease.

Tang L, Bie B, Zhi D.

Am J Infect Control. 2018 Dec;46(12):1375-1380. doi: 10.1016/j.ajic.2018.05.019. Epub 2018 Jun 19.


A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set.

Rasmy L, Wu Y, Wang N, Geng X, Zheng WJ, Wang F, Wu H, Xu H, Zhi D.

J Biomed Inform. 2018 Aug;84:11-16. doi: 10.1016/j.jbi.2018.06.011. Epub 2018 Jun 15.


Genome-wide meta-analysis of SNP-by9-ACEI/ARB and SNP-by-thiazide diuretic and effect on serum potassium in cohorts of European and African ancestry.

Irvin MR, Sitlani CM, Noordam R, Avery CL, Bis JC, Floyd JS, Li J, Limdi NA, Srinivasasainagendra V, Stewart J, de Mutsert R, Mook-Kanamori DO, Lipovich L, Kleinbrink EL, Smith A, Bartz TM, Whitsel EA, Uitterlinden AG, Wiggins KL, Wilson JG, Zhi D, Stricker BH, Rotter JI, Arnett DK, Psaty BM, Lange LA.

Pharmacogenomics J. 2019 Feb;19(1):97-108. doi: 10.1038/s41397-018-0021-9. Epub 2018 Jun 1.


Clinical Named Entity Recognition Using Deep Learning Models.

Wu Y, Jiang M, Xu J, Zhi D, Xu H.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1812-1819. eCollection 2017.


In Situ Blood Vessel Regeneration Using SP (Substance P) and SDF (Stromal Cell-Derived Factor)-1α Peptide Eluting Vascular Grafts.

Shafiq M, Zhang Q, Zhi D, Wang K, Kong D, Kim DH, Kim SH.

Arterioscler Thromb Vasc Biol. 2018 Jul;38(7):e117-e134. doi: 10.1161/ATVBAHA.118.310934. Epub 2018 May 31.


Novel carbamate-linked quaternary ammonium lipids containing unsaturated hydrophobic chains for gene delivery.

Zhou H, Yang J, Du Y, Fu S, Song C, Zhi D, Zhao Y, Chen H, Zhang S, Zhang S.

Bioorg Med Chem. 2018 Jul 23;26(12):3535-3540. doi: 10.1016/j.bmc.2018.05.029. Epub 2018 May 19.


Metabolic and inflammatory biomarkers are associated with epigenetic aging acceleration estimates in the GOLDN study.

Irvin MR, Aslibekyan S, Do A, Zhi D, Hidalgo B, Claas SA, Srinivasasainagendra V, Horvath S, Tiwari HK, Absher DM, Arnett DK.

Clin Epigenetics. 2018 Apr 18;10:56. doi: 10.1186/s13148-018-0481-4. eCollection 2018.


Acute Kidney Injury in Critically Ill Patients with Sepsis: Clinical Characteristics and Outcomes.

Zhi DY, Lin J, Zhuang HZ, Dong L, Ji XJ, Guo DC, Yang XW, Liu S, Yue Z, Yu SJ, Duan ML.

J Invest Surg. 2018 Apr 25:1-8. doi: 10.1080/08941939.2018.1453891. [Epub ahead of print]


All pins are not created equal: communicating skin cancer visually on Pinterest.

Park SE, Tang L, Bie B, Zhi D.

Transl Behav Med. 2019 Mar 1;9(2):336-346. doi: 10.1093/tbm/iby044.


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