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Items: 1 to 50 of 52

1.

Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies.

Perelygina L, Chen MH, Suppiah S, Adebayo A, Abernathy E, Dorsey M, Bercovitch L, Paris K, White KP, Krol A, Dhossche J, Torshin IY, Saini N, Klimczak LJ, Gordenin DA, Zharkikh A, Plotkin S, Sullivan KE, Icenogle J.

PLoS Pathog. 2019 Oct 28;15(10):e1008080. doi: 10.1371/journal.ppat.1008080. eCollection 2019 Oct.

2.

Association of BRCA1/2 defects with genomic scores predictive of DNA damage repair deficiency among breast cancer subtypes.

Timms KM, Abkevich V, Hughes E, Neff C, Reid J, Morris B, Kalva S, Potter J, Tran TV, Chen J, Iliev D, Sangale Z, Tikishvili E, Perry M, Zharkikh A, Gutin A, Lanchbury JS.

Breast Cancer Res. 2014 Dec 5;16(6):475. doi: 10.1186/s13058-014-0475-x.

3.

The genome of the domesticated apple (Malus × domestica Borkh.).

Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R.

Nat Genet. 2010 Oct;42(10):833-9. doi: 10.1038/ng.654. Epub 2010 Aug 29.

PMID:
20802477
4.

Characterization of equine and other vertebrate TLR3, TLR7, and TLR8 genes.

Astakhova NM, Perelygin AA, Zharkikh AA, Lear TL, Coleman SJ, MacLeod JN, Brinton MA.

Immunogenetics. 2009 Jul;61(7):529-39. doi: 10.1007/s00251-009-0381-z. Epub 2009 Jul 1.

PMID:
19568743
5.

Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions.

Zharkikh A, Troggio M, Pruss D, Cestaro A, Eldrdge G, Pindo M, Mitchell JT, Vezzulli S, Bhatnagar S, Fontana P, Viola R, Gutin A, Salamini F, Skolnick M, Velasco R.

J Biotechnol. 2008 Aug 31;136(1-2):38-43. doi: 10.1016/j.jbiotec.2008.04.013. Epub 2008 May 3.

PMID:
18538432
6.

A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers.

Vezzulli S, Troggio M, Coppola G, Jermakow A, Cartwright D, Zharkikh A, Stefanini M, Grando MS, Viola R, Adam-Blondon AF, Thomas M, This P, Velasco R.

Theor Appl Genet. 2008 Aug;117(4):499-511. doi: 10.1007/s00122-008-0794-3. Epub 2008 May 27.

PMID:
18504538
7.

Concerted evolution of vertebrate CCR2 and CCR5 genes and the origin of a recombinant equine CCR5/2 gene.

Perelygin AA, Zharkikh AA, Astakhova NM, Lear TL, Brinton MA.

J Hered. 2008 Sep-Oct;99(5):500-11. doi: 10.1093/jhered/esn029. Epub 2008 May 22.

PMID:
18502735
8.

SNP high-throughput screening in grapevine using the SNPlex genotyping system.

Pindo M, Vezzulli S, Coppola G, Cartwright DA, Zharkikh A, Velasco R, Troggio M.

BMC Plant Biol. 2008 Jan 28;8:12. doi: 10.1186/1471-2229-8-12.

9.

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.

Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Demattè L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando SM, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, Van de Peer Y, Salamini F, Viola R.

PLoS One. 2007 Dec 19;2(12):e1326.

10.

Characterization of the equine 2'-5' oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes.

Rios JJ, Perelygin AA, Long MT, Lear TL, Zharkikh AA, Brinton MA, Adelson DL.

BMC Genomics. 2007 Sep 7;8:313.

11.

The mammalian 2'-5' oligoadenylate synthetase gene family: evidence for concerted evolution of paralogous Oas1 genes in Rodentia and Artiodactyla.

Perelygin AA, Zharkikh AA, Scherbik SV, Brinton MA.

J Mol Evol. 2006 Oct;63(4):562-76. Epub 2006 Oct 5.

PMID:
17024523
12.

Comparative analysis of vertebrate EIF2AK2 (PKR) genes and assignment of the equine gene to ECA15q24-q25 and the bovine gene to BTA11q12-q15.

Perelygin AA, Lear TL, Zharkikh AA, Brinton MA.

Genet Sel Evol. 2006 Sep-Oct;38(5):551-63. Epub 2006 Sep 6.

13.

Structure of equine 2'-5'oligoadenylate synthetase (OAS) gene family and FISH mapping of OAS genes to ECA8p15-->p14 and BTA17q24-->q25.

Perelygin AA, Lear TL, Zharkikh AA, Brinton MA.

Cytogenet Genome Res. 2005;111(1):51-6.

PMID:
16093721
14.

Comprehensive statistical study of 452 BRCA1 missense substitutions with classification of eight recurrent substitutions as neutral.

Tavtigian SV, Deffenbaugh AM, Yin L, Judkins T, Scholl T, Samollow PB, de Silva D, Zharkikh A, Thomas A.

J Med Genet. 2006 Apr;43(4):295-305. Epub 2005 Jul 13.

15.

Analysis of missense variation in human BRCA1 in the context of interspecific sequence variation.

Abkevich V, Zharkikh A, Deffenbaugh AM, Frank D, Chen Y, Shattuck D, Skolnick MH, Gutin A, Tavtigian SV.

J Med Genet. 2004 Jul;41(7):492-507.

16.

Seasonal differences and protection by creatine or arginine pretreatment in ischemia of mammalian and molluscan neurons in vitro.

Zapara TA, Simonova OG, Zharkikh AA, Balestrino M, Ratushniak AS.

Brain Res. 2004 Jul 23;1015(1-2):41-9.

PMID:
15223365
17.

Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes.

Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, Gelpke MD, Roach J, Oh T, Ho IY, Wong M, Detter C, Verhoef F, Predki P, Tay A, Lucas S, Richardson P, Smith SF, Clark MS, Edwards YJ, Doggett N, Zharkikh A, Tavtigian SV, Pruss D, Barnstead M, Evans C, Baden H, Powell J, Glusman G, Rowen L, Hood L, Tan YH, Elgar G, Hawkins T, Venkatesh B, Rokhsar D, Brenner S.

Science. 2002 Aug 23;297(5585):1301-10. Epub 2002 Jul 25.

18.

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S.

Science. 2002 Apr 5;296(5565):92-100.

19.

The effects of the dynamic state of the cytoskeleton on neuronal plasticity.

Zapara TA, Simonova OG, Zharkikh AA, Ratushnyak AS.

Neurosci Behav Physiol. 2000 May-Jun;30(3):347-55.

PMID:
10970030
20.

[Effect of the cytoskeleton dynamic condition on the neuronal plasticity].

Zapara TA, Simonova OG, Zharkikh AA, Ratushniak AS.

Ross Fiziol Zh Im I M Sechenova. 1999 Jan;85(1):128-38. Russian.

PMID:
10389170
21.

Evolution of the DAZ gene family suggests that Y-linked DAZ plays little, or a limited, role in spermatogenesis but underlines a recent African origin for human populations.

Agulnik AI, Zharkikh A, Boettger-Tong H, Bourgeron T, McElreavey K, Bishop CE.

Hum Mol Genet. 1998 Sep;7(9):1371-7.

PMID:
9700189
22.

Effects of changes in dynamic equilibrium in microtubule and microfilament systems on the plastic responses of neurons.

Ratushnyak AS, Zapara TA, Zharkikh AA, Ratushnyak OA.

Neurosci Behav Physiol. 1997 Jul-Aug;27(4):353-9.

PMID:
9252991
23.

Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences.

Chaw SM, Zharkikh A, Sung HM, Lau TC, Li WH.

Mol Biol Evol. 1997 Jan;14(1):56-68.

PMID:
9000754
24.

[The effect of changes in the dynamic equilibrium in the microtubular and microfilamentous systems on neuronal plastic reactions].

Ratushniak AS, Zapara TA, Zharkikh AA, Ratushniak OA.

Zh Vyssh Nerv Deiat Im I P Pavlova. 1996 Mar-Apr;46(2):355-62. Russian.

PMID:
8726570
25.

The phylogenetic positions of the conifer genera Amentotaxus Phyllocladus, and Nageia inferred from 18S rRNA sequences.

Chaw SM, Sung HM, Long H, Zharkikh A, Li WH.

J Mol Evol. 1995 Aug;41(2):224-30.

PMID:
7666452
26.

Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique.

Zharkikh A, Li WH.

Mol Phylogenet Evol. 1995 Mar;4(1):44-63.

PMID:
7620635
27.

Estimation of evolutionary distances between nucleotide sequences.

Zharkikh A.

J Mol Evol. 1994 Sep;39(3):315-29.

PMID:
7932793
28.

The phylogenetic position of Taxaceae based on 18S rRNA sequences.

Chaw SM, Long H, Wang BS, Zharkikh A, Li WH.

J Mol Evol. 1993 Dec;37(6):624-30.

PMID:
8114115
29.

[Sequences resembling fragments of mitochondrial DNA in the human genome: features of evolution].

Sitnikova TL, Zharkikh AA.

Genetika. 1993 Nov;29(11):1793-805. Russian.

PMID:
8307368
30.

Structure and evolution of opossum, guinea pig, and porcupine cytochrome b genes.

Ma DP, Zharkikh A, Graur D, VandeBerg JL, Li WH.

J Mol Evol. 1993 Apr;36(4):327-34.

PMID:
8315653
31.

Quick assessment of similarity of two sequences by comparison of their L-tuple frequencies.

Zharkikh AA, Rzhetsky AYu.

Biosystems. 1993;30(1-3):93-111. No abstract available.

PMID:
8374084
32.

Statistical analysis of L-tuple frequencies in eubacteria and organelles.

Sitnikova TL, Zharkikh AA.

Biosystems. 1993;30(1-3):113-35.

PMID:
8374071
35.

The molecular taxonomy and evolution of the guinea pig.

Li WH, Hide WA, Zharkikh A, Ma DP, Graur D.

J Hered. 1992 May-Jun;83(3):174-81.

PMID:
1624762
36.

The biochemical phylogeny of guinea-pigs and gundis, and the paraphyly of the order rodentia.

Graur D, Hide WA, Zharkikh A, Li WH.

Comp Biochem Physiol B. 1992 Apr;101(4):495-8. Review.

PMID:
1611868
37.

VOSTORG: a package of microcomputer programs for sequence analysis and construction of phylogenetic trees.

Zharkikh AA, Rzhetsky AYu, Morosov PS, Sitnikova TL, Krushkal JS.

Gene. 1991 May 30;101(2):251-4.

PMID:
2055489
38.

[Molecular recapitulation in the globin gene system].

Rzhetskiĭ AIu, Rodin SN, Zharkikh AA.

Dokl Akad Nauk SSSR. 1990;315(2):487-91. Russian. No abstract available.

PMID:
2081446
39.

[Rapid evaluation of nucleotide sequence homology by frequencies of oligonucleotides].

Zharkikh AA, Rzhetskiĭ AIu.

Dokl Akad Nauk SSSR. 1989;308(5):1232-5. Russian. No abstract available.

PMID:
2612349
40.

[Theoretical analysis of the structural characteristics and evolution of transfer RNAs].

Ratner VA, Omel'ianchuk LV, Zharkikh AA, Kolchanov NA.

Zh Obshch Biol. 1985 Nov-Dec;46(6):732-42. Russian. No abstract available.

PMID:
4090739
41.

[The context analysis of polynucleotide sequences. II. Inverted repeats and complementary palindromes in RNA-polymerase genes].

Zharkikh AA, Solov'ev VV, Kolchanov NA.

Mol Biol (Mosk). 1985 May-Jun;19(3):597-609. Russian.

PMID:
2412104
43.
44.

[Evaluation of the degree of genetic divergence in the twin species of the common vole Microtus arvalis and Microtus subarvalis (Rodentia)].

Zakiian SM, Kul'bakina NA, Serov OL, Meĭer MN, Zharkikh AA.

Genetika. 1984 Aug;20(8):1365-73. Russian.

PMID:
6386603
45.
46.
48.

[Evolutionary and conformational analysis of a family of globins. The evolutionary role of deletions and insertions].

Zharkikh AA, Solov'ev VV, Kolchanov NA.

Zh Obshch Biol. 1983 Nov-Dec;44(6):790-801. Russian. No abstract available.

PMID:
6666348
49.
50.

[High saturation by direct copies in RNA-polymerase genes based on context analysis data].

Kolchanov NA, Solov'ev VV, Zharkikh AA.

Dokl Akad Nauk SSSR. 1983;273(3):741-4. Russian. No abstract available.

PMID:
6360607

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