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Items: 1 to 50 of 455


SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles.

Xie P, Gao M, Wang C, Zhang J, Noel P, Yang C, Von Hoff D, Han H, Zhang MQ, Lin W.

Nucleic Acids Res. 2019 Feb 25. pii: gkz116. doi: 10.1093/nar/gkz116. [Epub ahead of print]


NLRC3 inhibits MCT-induced pulmonary hypertension in rats via attenuating PI3K activation.

Zha LH, Zhou J, Li TZ, Luo H, Zhang MQ, Li S, Yu ZX.

J Cell Physiol. 2019 Feb 14. doi: 10.1002/jcp.28255. [Epub ahead of print]


Mercury/silver resistance genes and their association with antibiotic resistance genes and microbial community in a municipal wastewater treatment plant.

Yuan L, Li ZH, Zhang MQ, Shao W, Fan YY, Sheng GP.

Sci Total Environ. 2019 Mar 20;657:1014-1022. doi: 10.1016/j.scitotenv.2018.12.088. Epub 2018 Dec 7.


SOX30 is a prognostic biomarker and chemotherapeutic indicator for advanced-stage ovarian cancer.

Han F, Liu WB, Li JJ, Zhang MQ, Yang JT, Zhang X, Hao XL, Yin L, Mao CY, Jiang X, Cao J, Liu JY.

Endocr Relat Cancer. 2019 Jan 1. pii: ERC-18-0529.R1. doi: 10.1530/ERC-18-0529. [Epub ahead of print]


miR-454 regulates triglyceride synthesis in bovine mammary epithelial cells by targeting PPAR-γ.

Zhang MQ, Gao JL, Liao XD, Huang TH, Zhang MN, Wang MQ, Tian Y, Bai J, Zhou CH.

Gene. 2019 Apr 5;691:1-7. doi: 10.1016/j.gene.2018.12.048. Epub 2018 Dec 29.


SOX30 specially prevents Wnt-signaling to suppress metastasis and improve prognosis of lung adenocarcinoma patients.

Han F, Zhang MQ, Liu WB, Sun L, Hao XL, Yin L, Jiang X, Cao J, Liu JY.

Respir Res. 2018 Dec 4;19(1):241. doi: 10.1186/s12931-018-0952-3.


The impact of TRAIL on proliferation of secretory prostate cancer PC-3 cell and LMO2 gene expression.

Che Z, Li HW, Wang P, Jiang B, Li B, Zhao K, Wang SP, Gao H, Zhang MQ.

Eur Rev Med Pharmacol Sci. 2018 Nov;22(21):7172-7177. doi: 10.26355/eurrev_201811_16249.


The flightin gene is necessary for the emission of vibrational signals in the rice brown planthopper (Nilaparvata lugens Stǻl).

Chen X, Zhang MQ, Wang XQ, Guo JS, Li DT, Xue J, Pan WD, Zhang CX.

J Insect Physiol. 2019 Jan;112:101-108. doi: 10.1016/j.jinsphys.2018.10.009. Epub 2018 Nov 2.


Global transcriptional activity dynamics reveal functional enhancer RNAs.

Kim YJ, Xie P, Cao L, Zhang MQ, Kim TH.

Genome Res. 2018 Dec;28(12):1799-1811. doi: 10.1101/gr.233486.117. Epub 2018 Oct 23.


Differential Effects of Autophagy-Related 10 Protein on HCV Replication and Autophagy Flux Are Mediated by Its Cysteine44 and Cysteine135.

Zhang MQ, Li JR, Peng ZG, Zhang JP.

Front Immunol. 2018 Sep 24;9:2176. doi: 10.3389/fimmu.2018.02176. eCollection 2018.


Repeated Intrinsic Self-Healing of Wider Cracks in Polymer via Dynamic Reversible Covalent Bonding Molecularly Combined with a Two-Way Shape Memory Effect.

Fan LF, Rong MZ, Zhang MQ, Chen XD.

ACS Appl Mater Interfaces. 2018 Oct 23. doi: 10.1021/acsami.8b15636. [Epub ahead of print]


Identification and functional analysis of the doublesex gene in the sexual development of a hemimetabolous insect, the brown planthopper.

Zhuo JC, Hu QL, Zhang HH, Zhang MQ, Jo SB, Zhang CX.

Insect Biochem Mol Biol. 2018 Nov;102:31-42. doi: 10.1016/j.ibmb.2018.09.007. Epub 2018 Sep 17.


Polarization-based super-resolution imaging of surface-enhanced Raman scattering nanoparticles with orientational information.

Wang M, Chen M, Zhanghao K, Zhang X, Jing Z, Gao J, Zhang MQ, Jin D, Dai Z, Xi P, Dai Q.

Nanoscale. 2018 Nov 1;10(42):19757-19765. doi: 10.1039/c8nr04808h.


HiCDB: a sensitive and robust method for detecting contact domain boundaries.

Chen F, Li G, Zhang MQ, Chen Y.

Nucleic Acids Res. 2018 Nov 30;46(21):11239-11250. doi: 10.1093/nar/gky789.


3D N-doped carbon framework with embedded CoS nanoparticles as highly active and durable oxygen reduction and evolution electrocatalyst.

Zhu AS, Xie P, Nong J, Rong MZ, Zhang MQ, Guo YM.

Nanotechnology. 2018 Nov 16;29(46):465402. doi: 10.1088/1361-6528/aadd6e. Epub 2018 Aug 29.


Synergistic effect of dual targeting vaccine adjuvant with aminated β-glucan and CpG-oligodeoxynucleotides for both humoral and cellular immune responses.

Jin JW, Tang SQ, Rong MZ, Zhang MQ.

Acta Biomater. 2018 Sep 15;78:211-223. doi: 10.1016/j.actbio.2018.08.002. Epub 2018 Aug 9.


Inhibiting the integrated stress response pathway prevents aberrant chondrocyte differentiation thereby alleviating chondrodysplasia.

Wang C, Tan Z, Niu B, Tsang KY, Tai A, Chan WCW, Lo RLK, Leung KKH, Dung NWF, Itoh N, Zhang MQ, Chan D, Cheah KSE.

Elife. 2018 Jul 19;7. pii: e37673. doi: 10.7554/eLife.37673.


Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence.

Dong Q, Wei L, Zhang MQ, Wang X.

Aging (Albany NY). 2018 Jun 24;10(6):1489-1505. doi: 10.18632/aging.101485.


CAPTURE: In Situ Analysis of Chromatin Composition of Endogenous Genomic Loci by Biotinylated dCas9.

Liu X, Zhang Y, Chen Y, Li M, Shao Z, Zhang MQ, Xu J.

Curr Protoc Mol Biol. 2018 Jul;123(1):e64. doi: 10.1002/cpmb.64. Epub 2018 Jun 19.


A Very Simple Strategy for Preparing External Stress-Free Two-Way Shape Memory Polymers by Making Use of Hydrogen Bonds.

Fan LF, Rong MZ, Zhang MQ, Chen XD.

Macromol Rapid Commun. 2018 Jun;39(12):e1700714. doi: 10.1002/marc.201700714. Epub 2018 May 11.


Opposite Effects of Two Human ATG10 Isoforms on Replication of a HCV Sub-genomic Replicon Are Mediated via Regulating Autophagy Flux in Zebrafish.

Li YC, Zhang MQ, Zhang JP.

Front Cell Infect Microbiol. 2018 Apr 4;8:109. doi: 10.3389/fcimb.2018.00109. eCollection 2018.


Synergistic co-regulation and competition by a SOX9-GLI-FOXA phasic transcriptional network coordinate chondrocyte differentiation transitions.

Tan Z, Niu B, Tsang KY, Melhado IG, Ohba S, He X, Huang Y, Wang C, McMahon AP, Jauch R, Chan D, Zhang MQ, Cheah KSE.

PLoS Genet. 2018 Apr 16;14(4):e1007346. doi: 10.1371/journal.pgen.1007346. eCollection 2018 Apr.


Co-inhibitory Molecule B7 Superfamily Member 1 Expressed by Tumor-Infiltrating Myeloid Cells Induces Dysfunction of Anti-tumor CD8+ T Cells.

Li J, Lee Y, Li Y, Jiang Y, Lu H, Zang W, Zhao X, Liu L, Chen Y, Tan H, Yang Z, Zhang MQ, Mak TW, Ni L, Dong C.

Immunity. 2018 Apr 17;48(4):773-786.e5. doi: 10.1016/j.immuni.2018.03.018. Epub 2018 Apr 3.


Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research.

Ray P, Torck A, Quigley L, Wangzhou A, Neiman M, Rao C, Lam T, Kim JY, Kim TH, Zhang MQ, Dussor G, Price TJ.

Pain. 2018 Jul;159(7):1325-1345. doi: 10.1097/j.pain.0000000000001217.


FIND: difFerential chromatin INteractions Detection using a spatial Poisson process.

Djekidel MN, Chen Y, Zhang MQ.

Genome Res. 2018 Feb 12. doi: 10.1101/gr.212241.116. [Epub ahead of print]


Large-area few-layer hexagonal boron nitride prepared by quadrupole field aided exfoliation.

Lu HL, Rong MZ, Zhang MQ.

Nanotechnology. 2018 Feb 9;29(12):12LT01. doi: 10.1088/1361-6528/aaa822. [Epub ahead of print]


Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation.

Li Y, He Y, Liang Z, Wang Y, Chen F, Djekidel MN, Li G, Zhang X, Xiang S, Wang Z, Gao J, Zhang MQ, Chen Y.

Cell Death Dis. 2018 Feb 8;9(2):200. doi: 10.1038/s41419-017-0173-6.


Emergent Lévy behavior in single-cell stochastic gene expression.

Jia C, Zhang MQ, Qian H.

Phys Rev E. 2017 Oct;96(4-1):040402. doi: 10.1103/PhysRevE.96.040402. Epub 2017 Oct 18.


Large Area Few Layers Hexagonal Boron Nitride Prepared by Quadrupole Field Aided Exfoliation.

Hanlun L, Rong MZ, Zhang MQ.

Nanotechnology. 2018 Jan 16. doi: 10.1088/1361-6528/aaa822. [Epub ahead of print]


Neural Plasticity Is Involved in Physiological Sleep, Depressive Sleep Disturbances, and Antidepressant Treatments.

Zhang MQ, Li R, Wang YQ, Huang ZL.

Neural Plast. 2017;2017:5870735. doi: 10.1155/2017/5870735. Epub 2017 Oct 18. Review.


Stochastic fluctuations can reveal the feedback signs of gene regulatory networks at the single-molecule level.

Jia C, Xie P, Chen M, Zhang MQ.

Sci Rep. 2017 Nov 22;7(1):16037. doi: 10.1038/s41598-017-15464-9.


BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions.

Liang Z, Li G, Wang Z, Djekidel MN, Li Y, Qian MP, Zhang MQ, Chen Y.

Nat Commun. 2017 Nov 20;8(1):1622. doi: 10.1038/s41467-017-01754-3.


NONCODEV5: a comprehensive annotation database for long non-coding RNAs.

Fang S, Zhang L, Guo J, Niu Y, Wu Y, Li H, Zhao L, Li X, Teng X, Sun X, Sun L, Zhang MQ, Chen R, Zhao Y.

Nucleic Acids Res. 2018 Jan 4;46(D1):D308-D314. doi: 10.1093/nar/gkx1107.


Activation of Parvalbumin Neurons in the Rostro-Dorsal Sector of the Thalamic Reticular Nucleus Promotes Sensitivity to Pain in Mice.

Liu J, Zhang MQ, Wu X, Lazarus M, Cherasse Y, Yuan MY, Huang ZL, Li RX.

Neuroscience. 2017 Dec 16;366:113-123. doi: 10.1016/j.neuroscience.2017.10.013. Epub 2017 Oct 16.


Self-Healing of Polymer in Acidic Water toward Strength Restoration through the Synergistic Effect of Hydrophilic and Hydrophobic Interactions.

Xia NN, Xiong XM, Rong MZ, Zhang MQ, Kong F.

ACS Appl Mater Interfaces. 2017 Oct 25;9(42):37300-37309. doi: 10.1021/acsami.7b11230. Epub 2017 Oct 16.


Network embedding-based representation learning for single cell RNA-seq data.

Li X, Chen W, Chen Y, Zhang X, Gu J, Zhang MQ.

Nucleic Acids Res. 2017 Nov 2;45(19):e166. doi: 10.1093/nar/gkx750.


CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data.

Guo W, Zhu P, Pellegrini M, Zhang MQ, Wang X, Ni Z.

Bioinformatics. 2018 Feb 1;34(3):381-387. doi: 10.1093/bioinformatics/btx595.


Tra-2 Mediates Cross-Talk Between Sex Determination and Wing Polyphenism in Female Nilaparvata lugens.

Zhuo JC, Lei C, Shi JK, Xu N, Xue WH, Zhang MQ, Ren ZW, Zhang HH, Zhang CX.

Genetics. 2017 Nov;207(3):1067-1078. doi: 10.1534/genetics.117.300328. Epub 2017 Sep 26.


Size-Dependent Reactivity of Nano-Sized Neutral Manganese Oxide Clusters toward Ethylene.

Chen JJ, Zhang T, Zhang MQ, Liu QY, Li XN, He SG.

Chemistry. 2017 Nov 7;23(62):15820-15826. doi: 10.1002/chem.201703745. Epub 2017 Oct 17.


[miR-218 Promoted the Apoptosis of Human Ovarian Carcinoma Cells via Suppression of the WNT/β-Catenin Signaling Pathway].

Huang Y, Liang SH, Xiang LB, Han XT, Zhang W, Tang J, Wu XH, Zhang MQ.

Mol Biol (Mosk). 2017 Jul-Aug;51(4):629-636. doi: 10.7868/S0026898417030065. Russian.


PAF1 regulation of promoter-proximal pause release via enhancer activation.

Chen FX, Xie P, Collings CK, Cao K, Aoi Y, Marshall SA, Rendleman EJ, Ugarenko M, Ozark PA, Zhang A, Shiekhattar R, Smith ER, Zhang MQ, Shilatifard A.

Science. 2017 Sep 22;357(6357):1294-1298. doi: 10.1126/science.aan3269. Epub 2017 Aug 31.


In Situ Capture of Chromatin Interactions by Biotinylated dCas9.

Liu X, Zhang Y, Chen Y, Li M, Zhou F, Li K, Cao H, Ni M, Liu Y, Gu Z, Dickerson KE, Xie S, Hon GC, Xuan Z, Zhang MQ, Shao Z, Xu J.

Cell. 2017 Aug 24;170(5):1028-1043.e19. doi: 10.1016/j.cell.2017.08.003.


Allelic reprogramming of 3D chromatin architecture during early mammalian development.

Du Z, Zheng H, Huang B, Ma R, Wu J, Zhang X, He J, Xiang Y, Wang Q, Li Y, Ma J, Zhang X, Zhang K, Wang Y, Zhang MQ, Gao J, Dixon JR, Wang X, Zeng J, Xie W.

Nature. 2017 Jul 12;547(7662):232-235. doi: 10.1038/nature23263.


Reconstructing cell cycle pseudo time-series via single-cell transcriptome data.

Liu Z, Lou H, Xie K, Wang H, Chen N, Aparicio OM, Zhang MQ, Jiang R, Chen T.

Nat Commun. 2017 Jun 19;8(1):22. doi: 10.1038/s41467-017-00039-z.


A Facile Approach Toward Scalable Fabrication of Reversible Shape-Memory Polymers with Bonded Elastomer Microphases as Internal Stress Provider.

Fan LF, Rong MZ, Zhang MQ, Chen XD.

Macromol Rapid Commun. 2017 Aug;38(16). doi: 10.1002/marc.201700124. Epub 2017 Jun 19.


A novel epigenetic AML1-ETO/THAP10/miR-383 mini-circuitry contributes to t(8;21) leukaemogenesis.

Li Y, Ning Q, Shi J, Chen Y, Jiang M, Gao L, Huang W, Jing Y, Huang S, Liu A, Hu Z, Liu D, Wang L, Nervi C, Dai Y, Zhang MQ, Yu L.

EMBO Mol Med. 2017 Jul;9(7):933-949. doi: 10.15252/emmm.201607180.


HCSGD: An integrated database of human cellular senescence genes.

Dong Q, Han H, Liu X, Wei L, Zhang W, Zhao Z, Zhang MQ, Wang X.

J Genet Genomics. 2017 May 20;44(5):227-234. doi: 10.1016/j.jgg.2017.04.001. Epub 2017 Apr 29.


DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes.

Pavlovic M, Ray P, Pavlovic K, Kotamarti A, Chen M, Zhang MQ.

Bioinformatics. 2017 Oct 1;33(19):2986-2994. doi: 10.1093/bioinformatics/btx316.


The Mutual Interaction Between Sleep and Epilepsy on the Neurobiological Basis and Therapy.

Wang YQ, Zhang MQ, Li R, Qu WM, Huang ZL.

Curr Neuropharmacol. 2018;16(1):5-16. doi: 10.2174/1570159X15666170509101237. Review.


Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes.

Ni Y, Cao B, Ma T, Niu G, Huo Y, Huang J, Chen D, Liu Y, Yu B, Zhang MQ, Niu H.

Elife. 2017 May 9;6. pii: e21660. doi: 10.7554/eLife.21660.

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