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Items: 34

1.

Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling.

Zhang AW, O'Flanagan C, Chavez EA, Lim JLP, Ceglia N, McPherson A, Wiens M, Walters P, Chan T, Hewitson B, Lai D, Mottok A, Sarkozy C, Chong L, Aoki T, Wang X, Weng AP, McAlpine JN, Aparicio S, Steidl C, Campbell KR, Shah SP.

Nat Methods. 2019 Sep 9. doi: 10.1038/s41592-019-0529-1. [Epub ahead of print]

PMID:
31501550
2.

Cancer stemness, intratumoral heterogeneity, and immune response across cancers.

Miranda A, Hamilton PT, Zhang AW, Pattnaik S, Becht E, Mezheyeuski A, Bruun J, Micke P, de Reynies A, Nelson BH.

Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):9020-9029. doi: 10.1073/pnas.1818210116. Epub 2019 Apr 17.

PMID:
30996127
3.

Acute phase serum cathepsin S level and cathepsin S/cystatin C ratio are the associated factors with cerebral infarction and their diagnostic value for cerebral infarction.

Zhang AW, Han XS, Xu XT, Fang YN, Chen HB, Jiang T.

Kaohsiung J Med Sci. 2019 Feb;35(2):95-101. doi: 10.1002/kjm2.12014.

4.

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.

Funnell T, Zhang AW, Grewal D, McKinney S, Bashashati A, Wang YK, Shah SP.

PLoS Comput Biol. 2019 Feb 22;15(2):e1006799. doi: 10.1371/journal.pcbi.1006799. eCollection 2019 Feb.

5.

Computational Analysis of Transcriptional Regulation Sites at the HTT Gene Locus.

De Souza RAG, Kosior N, Thomson SB, Mathelier A, Zhang AW, Bečanović K, Wasserman WW, Leavitt BR.

J Huntingtons Dis. 2018;7(3):223-237. doi: 10.3233/JHD-170272.

PMID:
30103339
6.

Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.

Zhang AW, McPherson A, Milne K, Kroeger DR, Hamilton PT, Miranda A, Funnell T, Little N, de Souza CPE, Laan S, LeDoux S, Cochrane DR, Lim JLP, Yang W, Roth A, Smith MA, Ho J, Tse K, Zeng T, Shlafman I, Mayo MR, Moore R, Failmezger H, Heindl A, Wang YK, Bashashati A, Grewal DS, Brown SD, Lai D, Wan ANC, Nielsen CB, Huebner C, Tessier-Cloutier B, Anglesio MS, Bouchard-Côté A, Yuan Y, Wasserman WW, Gilks CB, Karnezis AN, Aparicio S, McAlpine JN, Huntsman DG, Holt RA, Nelson BH, Shah SP.

Cell. 2018 Jun 14;173(7):1755-1769.e22. doi: 10.1016/j.cell.2018.03.073. Epub 2018 May 10.

7.

Predicting DNA hybridization kinetics from sequence.

Zhang JX, Fang JZ, Duan W, Wu LR, Zhang AW, Dalchau N, Yordanov B, Petersen R, Phillips A, Zhang DY.

Nat Chem. 2018 Jan;10(1):91-98. doi: 10.1038/nchem.2877. Epub 2017 Nov 6.

8.

MiR-375: A prospective regulator in medullary thyroid cancer based on microarray data and bioinformatics analyses.

Shi L, Zhao SM, Luo Y, Zhang AW, Wei LH, Xie ZY, Li YY, Ma W.

Pathol Res Pract. 2017 Nov;213(11):1344-1354. doi: 10.1016/j.prp.2017.09.024. Epub 2017 Sep 27.

PMID:
29033189
9.

[Expression of HDAC9 in different brain regions in mice with cerebral ischemic stroke].

Mai HT, Jiang T, Zhang AW, Lv TM, Yang CH, Qin SS.

Nan Fang Yi Ke Da Xue Xue Bao. 2017 Jun 20;37(6):812-816. Chinese.

PMID:
28669958
10.

Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes.

Wang YK, Bashashati A, Anglesio MS, Cochrane DR, Grewal DS, Ha G, McPherson A, Horlings HM, Senz J, Prentice LM, Karnezis AN, Lai D, Aniba MR, Zhang AW, Shumansky K, Siu C, Wan A, McConechy MK, Li-Chang H, Tone A, Provencher D, de Ladurantaye M, Fleury H, Okamoto A, Yanagida S, Yanaihara N, Saito M, Mungall AJ, Moore R, Marra MA, Gilks CB, Mes-Masson AM, McAlpine JN, Aparicio S, Huntsman DG, Shah SP.

Nat Genet. 2017 Jun;49(6):856-865. doi: 10.1038/ng.3849. Epub 2017 Apr 24.

PMID:
28436987
11.

CuboCube: Student creation of a cancer genetics e-textbook using open-access software for social learning.

Seid-Karbasi P, Ye XC, Zhang AW, Gladish N, Cheng SY, Rothe K, Pilsworth JA, Kang MA, Doolittle N, Jiang X, Stirling PC, Wasserman WW.

PLoS Biol. 2017 Mar 7;15(3):e2001192. doi: 10.1371/journal.pbio.2001192. eCollection 2017 Mar.

12.

Synergistic Effects of Gold Nanocages in Hyperthermia and Radiotherapy Treatment.

Zhang AW, Guo WH, Qi YF, Wang JZ, Ma XX, Yu DX.

Nanoscale Res Lett. 2016 Dec;11(1):279. doi: 10.1186/s11671-016-1501-y. Epub 2016 Jun 2.

13.

Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.

McPherson A, Roth A, Laks E, Masud T, Bashashati A, Zhang AW, Ha G, Biele J, Yap D, Wan A, Prentice LM, Khattra J, Smith MA, Nielsen CB, Mullaly SC, Kalloger S, Karnezis A, Shumansky K, Siu C, Rosner J, Chan HL, Ho J, Melnyk N, Senz J, Yang W, Moore R, Mungall AJ, Marra MA, Bouchard-Côté A, Gilks CB, Huntsman DG, McAlpine JN, Aparicio S, Shah SP.

Nat Genet. 2016 Jul;48(7):758-67. doi: 10.1038/ng.3573. Epub 2016 May 16.

PMID:
27182968
14.

[The clinical and imaging features of 118 patients with spontaneous cerebral arterial dissections presenting with ischemic stroke].

Chen HB, Li ZH, Hong H, Liu G, Zhang AW, Zhang J, Luo BN, Zeng JS.

Zhonghua Nei Ke Za Zhi. 2016 May 1;55(5):366-71. doi: 10.3760/cma.j.issn.0578-1426.2016.05.007. Chinese.

PMID:
27143186
15.

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.

Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW.

Nucleic Acids Res. 2016 Jan 4;44(D1):D110-5. doi: 10.1093/nar/gkv1176. Epub 2015 Nov 3.

16.

[Hyperspectral Band Selection Based on Spectral Clustering and Inter-Class Separability Factor].

Qin FP, Zhang AW, Wang SM, Meng XG, Hu SX, Sun WD.

Guang Pu Xue Yu Guang Pu Fen Xi. 2015 May;35(5):1357-64. Chinese.

PMID:
26415460
17.

[The linear hyperspectral camera rotating scan imaging geometric correction based on the precise spectral sampling].

Wang SM, Zhang AW, Hu SX, Wang JM, Meng XG, Duan YH, Sun WD.

Guang Pu Xue Yu Guang Pu Fen Xi. 2015 Feb;35(2):557-62. Chinese.

PMID:
25970932
18.

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.

Mathelier A, Lefebvre C, Zhang AW, Arenillas DJ, Ding J, Wasserman WW, Shah SP.

Genome Biol. 2015 Apr 23;16:84. doi: 10.1186/s13059-015-0648-7.

19.

Purification of monoclonal antibodies from clarified cell culture fluid using Protein A capture continuous countercurrent tangential chromatography.

Dutta AK, Tran T, Napadensky B, Teella A, Brookhart G, Ropp PA, Zhang AW, Tustian AD, Zydney AL, Shinkazh O.

J Biotechnol. 2015 Nov 10;213:54-64. doi: 10.1016/j.jbiotec.2015.02.026. Epub 2015 Mar 5.

20.

Neuroprotective effect of RYGB in Zucker fatty diabetic rats.

Han XS, Huang Y, Jing HJ, Zhang AW, Jiang T, Xu YM.

Int J Clin Exp Med. 2014 Oct 15;7(10):3297-304. eCollection 2014.

21.

Pregabalin alleviates the nitroglycerin-induced hyperalgesia in rats.

Di W, Zheng ZY, Xiao ZJ, Qi WW, Shi XL, Luo N, Lin JW, Ding MH, Zhang AW, Fang YN.

Neuroscience. 2015 Jan 22;284:11-7. doi: 10.1016/j.neuroscience.2014.08.056. Epub 2014 Oct 5. Erratum in: Neuroscience. 2015 Jan 22;284:1013.

PMID:
25290014
22.

[The hyperspectral camera side-scan geometric imaging in any direction considering the spectral mixing].

Wang SM, Zhang AW, Hu SX, Sun WD.

Guang Pu Xue Yu Guang Pu Fen Xi. 2014 Jul;34(7):1983-9. Chinese.

PMID:
25269321
23.

[An improved low spectral distortion PCA fusion method].

Peng S, Zhang AW, Li HL, Hu SX, Meng XG, Sun WD.

Guang Pu Xue Yu Guang Pu Fen Xi. 2013 Oct;33(10):2777-82. Chinese.

PMID:
24409735
24.

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.

Mathelier A, Zhao X, Zhang AW, Parcy F, Worsley-Hunt R, Arenillas DJ, Buchman S, Chen CY, Chou A, Ienasescu H, Lim J, Shyr C, Tan G, Zhou M, Lenhard B, Sandelin A, Wasserman WW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D142-7. doi: 10.1093/nar/gkt997. Epub 2013 Nov 4.

25.

Effects of transcranial direct current stimulation on hemichannel pannexin-1 and neural plasticity in rat model of cerebral infarction.

Jiang T, Xu RX, Zhang AW, Di W, Xiao ZJ, Miao JY, Luo N, Fang YN.

Neuroscience. 2012 Dec 13;226:421-6. doi: 10.1016/j.neuroscience.2012.09.035. Epub 2012 Sep 20.

PMID:
23000539
26.

[Advance in the study of the powdered weathering profile of sandstone on China Yungang Grottoes based on VIS/NIR hyperspectral imaging].

Zhou X, Gao F, Zhang AW, Zhou KC.

Guang Pu Xue Yu Guang Pu Fen Xi. 2012 Mar;32(3):790-4. Chinese.

PMID:
22582654
27.

Preliminary evaluation of optical glucose sensing in red cell concentrations using near-infrared diffuse-reflectance spectroscopy.

Suzuki Y, Maruo K, Zhang AW, Shimogaki K, Ogawa H, Hirayama F.

J Biomed Opt. 2012 Jan;17(1):017004. doi: 10.1117/1.JBO.17.1.017004.

28.

Effect of electroacupuncture therapy on the expression of Na(v)1.1 and Na(v)1.6 in rat after acute cerebral ischemia.

Ren L, Wang YK, Fang YN, Zhang AW, Li XL.

Neurol Res. 2010 Dec;32(10):1110-6. doi: 10.1179/016164110X12700393823453. Epub 2010 May 18.

PMID:
20483028
29.

Effect of electroacupuncture on the expression of Nav1.1 in rat after acute cerebral ischemia.

Ren L, Fang Yn, Zhang Aw, Li Xl, Wang Xj, Yin Z, Miao Jy.

Neurol Res. 2010 Sep;32(7):763-9. doi: 10.1179/016164109X12445616596481. Epub 2009 Aug 21.

PMID:
19703358
30.

Molecular Identification and Phylogenetic Grouping of Diaporthe phaseolorum and Phomopsis longicolla Isolates from Soybean.

Zhang AW, Riccioni L, Pedersen WL, Kollipara KP, Hartman GL.

Phytopathology. 1998 Dec;88(12):1306-14. doi: 10.1094/PHYTO.1998.88.12.1306.

31.

Molecular Detection of Diaporthe phaseolorum and Phomopsis longicolla from Soybean Seeds.

Zhang AW, Hartman GL, Curio-Penny B, Pedersen WL, Becker KB.

Phytopathology. 1999 Sep;89(9):796-804. doi: 10.1094/PHYTO.1999.89.9.796.

32.

[The effect of ischemia-related leukoaraiosis on the conscious disturbance after stroke].

Fang YN, Zhang AW, Li H, Ren L, Li XL.

Zhonghua Liu Xing Bing Xue Za Zhi. 2007 Sep;28(9):906-9. Chinese.

PMID:
18251278
33.

Effects of yeast (Saccharomyces cerevisiae) cell components on growth performance, meat quality, and ileal mucosa development of broiler chicks.

Zhang AW, Lee BD, Lee SK, Lee KW, An GH, Song KB, Lee CH.

Poult Sci. 2005 Jul;84(7):1015-21.

PMID:
16050118
34.

Using PCR to Distinguish Diaporthe phaseolorum and Phomopsis longicolla from Other Soybean Fungal Pathogens and to Detect Them in Soybean Tissues.

Zhang AW, Hartman GL, Riccioni L, Chen WD, Ma RZ, Pedersen WL.

Plant Dis. 1997 Oct;81(10):1143-1149. doi: 10.1094/PDIS.1997.81.10.1143.

PMID:
30861709

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